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Literature for family S1

Family

Summary Holotypes Alignment Tree Genomes Structure Literature H-seq M-seq Architecture

S1A

Summary Holotypes Alignment Tree Genomes Literature

S1B

Summary Holotypes Alignment Tree Genomes Literature

S1C

Summary Holotypes Alignment Tree Genomes Literature

S1D

Summary Holotypes Alignment Tree Genomes Literature

S1E

Summary Holotypes Alignment Tree Genomes Literature

S1F

Summary Holotypes Alignment Tree Genomes Literature

(Topics flags: S Structure, I Inhibitor, P Specificity, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

    2024
  1. Denesyuk,A.I., Denessiouk,K., Johnson,M.S. and Uversky,V.N.
    Structural Catalytic Core in Subtilisin-like Proteins and Its Comparison to Trypsin-like Serine Proteases and Alpha/Beta-Hydrolases
    Int J Mol Sci25, PubMed  Europe PubMed DOI
    2. 2020
  2. Querino Lima Afonso,M., da Fonseca NJ Jr, de Oliveira,L.C., Lobo,F.P. and Bleicher,L.
    Coevolved positions represent key functional properties in the trypsin-like serine proteases protein family
    J Chem Inf Model60, 1060-1068. PubMed  Europe PubMed DOI
    3. 2019
  3. Goettig,P., Brandstetter,H. and Magdolen,V.
    Surface loops of trypsin-like serine proteases as determinants of function
    Biochimie166, 52-76. PubMed  Europe PubMed DOI  P
  4. Stojanovski,B.M., Chen,Z., Koester,S.K., Pelc,L.A. and Di Cera,E.
    Role of the I16-D194 ionic interaction in the trypsin fold
    Sci Rep9, 18035-18035. PubMed  Europe PubMed DOI
    5. 2018
  5. Masurier,N., Arama,D.P., El Amri,C. and Lisowski,V.
    Inhibitors of kallikrein-related peptidases: an overview
    Med Res Rev38, 655-683. PubMed  Europe PubMed DOI  I
  6. Waldner,B.J., Kraml,J., Kahler,U., Spinn,A., Schauperl,M., Podewitz,M., Fuchs,J.E., Cruciani,G. and Liedl,K.R.
    Electrostatic recognition in substrate binding to serine proteases
    J Mol Recognite2727-e2727. PubMed  Europe PubMed DOI
    7. 2017
  7. Tanabe,L.M. and List,K.
    The role of type II transmembrane serine protease-mediated signaling in cancer
    FEBS J284, 1421-1436. PubMed  Europe PubMed DOI  I
    8. 2015
  8. Pelc,L.A., Chen,Z., Gohara,D.W., Vogt,A.D., Pozzi,N. and Di Cera,E.
    Why Ser and not Thr brokers catalysis in the trypsin fold
    Biochemistry54, 1457-1464. PubMed  Europe PubMed DOI
    9. 2012
  9. Laskar,A., Rodger,E.J., Chatterjee,A. and Mandal,C.
    Modeling and structural analysis of PA clan serine proteases
    BMC Res Notes5, 256-256. PubMed  Europe PubMed DOI  S
  10. Pozzi,N., Vogt,A.D., Gohara,D.W. and Di Cera,E.
    Conformational selection in trypsin-like proteases
    Curr Opin Struct Biol22, 421-431. PubMed  Europe PubMed DOI
    11. 2009
  11. Wu,D.D., Wang,G.D., Irwin,D.M. and Zhang,Y.P.
    A profound role for the expansion of trypsin-like serine protease family in the evolution of hematophagy in mosquito
    Mol Biol Evol26, 2333-2341. PubMed  Europe PubMed DOI
    12. 2008
  12. Bethencourt,L. and Nunez,O.
    Serine protease mechanism-based mimics. Direct evidence for a transition state bridge proton in stable potentials
    J Org Chem73, 2105-2113. PubMed  Europe PubMed DOI
  13. Leskovac,V., Trivic,S., Pericin,D., Popovic,M. and Kandrac,J.
    Short hydrogen bonds in the catalytic mechanism of serine proteases
    J Serb Chem Soc73, 393-403. DOI
  14. Page,M.J. and Di Cera,E.
    Serine peptidases: classification, structure and function
    Cell Mol Life Sci65, 1220-1236. PubMed  Europe PubMed DOI  V
  15. Scheiner,S.
    Analysis of catalytic mechanism of serine proteases. Viability of the ring-flip hypothesis
    J Phys Chem B112, 6837-6846. PubMed  Europe PubMed DOI
    16. 2007
  16. Shokhen,M., Khazanov,N. and Albeck,A.
    The cooperative effect between active site ionized groups and water desolvation controls the alteration of acid/base catalysis in serine proteases
    Chembiochem8, 1416-1421. PubMed  Europe PubMed DOI
    17. 2006
  17. [YEAR:21-2-2006]Fodor,K., Harmat,V., Neutze,R., Szilagyi,L., Graf,L. and Katona,G.
    Enzyme:substrate hydrogen bond shortening during the acylation phase of serine protease catalysis
    Biochemistry45, 2114-2121. PubMed  Europe PubMed DOI
  18. [YEAR:19-7-2006]Fuhrmann,C.N., Daugherty,M.D. and Agard,D.A.
    Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis
    J Am Chem Soc128, 9086-9102. PubMed  Europe PubMed DOI  S
  19. [YEAR:29-6-2006]Gallwitz,M. and Hellman,L.
    Rapid lineage-specific diversification of the mast cell chymase locus during mammalian evolution
    Immunogenetics58, 641-654. PubMed  Europe PubMed DOI
  20. [YEAR:29-6-2006]Gallwitz,M., Reimer,J.M. and Hellman,L.
    Expansion of the mast cell chymase locus over the past 200 million years of mammalian evolution
    Immunogenetics58, 655-669. PubMed  Europe PubMed DOI
  21. [YEAR:5-6-2006]Liu,B., Schofield,C.J. and Wilmouth,R.C.
    Structural analyses on intermediates in serine protease catalysis
    J Biol Chem281, 24024-24035. PubMed  Europe PubMed DOI
  22. Lundwall,A., Band,V., Blaber,M., Clements,J.A., Courty,Y., Diamandis,E.P., Fritz,H., Lilja,H., Malm,J., Maltais,L.J., Olsson,A.Y., Petraki,C., Scorilas,A., Sotiropoulou,G., Stenman,U.H., Stephan,C., Talieri,M. and Yousef,G.M.
    A comprehensive nomenclature for serine proteases with homology to tissue kallikreins
    Biol Chem387, 637-641. PubMed  Europe PubMed DOI
  23. [YEAR:27-12-2006]Wernersson,S., Reimer,J.M., Poorafshar,M., Karlson,U., Wermenstam,N., Bengten,E., Wilson,M., Pilstrom,L. and Hellman,L.
    Granzyme-like sequences in bony fish shed light on the emergence of hematopoietic serine proteases during vertebrate evolution
    Dev Comp Immunol30, 901-918. PubMed  Europe PubMed DOI
    24. 2004
  24. [YEAR:9-6-2004]Ishida,T. and Kato,S.
    Role of Asp102 in the catalytic relay system of serine proteases: a theoretical study
    J Am Chem Soc126, 7111-7118. PubMed  Europe PubMed DOI
  25. [YEAR:15-2-2004]Shokhen,M. and Albeck,A.
    Is there a weak H-bond - > LBHB transition on tetrahedral complex formation in serine proteases?
    Proteins54, 468-477. PubMed  Europe PubMed DOI
  26. Sim,R.B. and Tsiftsoglou,S.A.
    Proteases of the complement system
    Biochem Soc Trans32, 21-27. PubMed  Europe PubMed DOI
    27. 2003
  27. Holding,C.
    Serine protease Jurassic Park
    Genome Biol4, DOI
  28. [YEAR:30-1-2003]Ross,J., Jiang,H., Kanost,M.R. and Wang,Y.
    Serine proteases and their homologs in the Drosophila melanogaster genome: an initial analysis of sequence conservation and phylogenetic relationships
    Gene304, 117-131. PubMed  Europe PubMed DOI
  29. Wouters,M.A., Liu,K., Riek,P. and Husain,A.
    A despecialization step underlying evolution of a family of serine proteases
    Mol Cell12, 343-354. PubMed  Europe PubMed DOI
    30. 2002
  30. [YEAR:29-11-2002]Olsson,A.Y. and Lundwall,A.
    Organization and evolution of the glandular kallikrein locus in Mus musculus
    Biochem Biophys Res Commun299, 305-311. PubMed  Europe PubMed DOI
  31. Rojas,A. and Doolittle,R.F.
    The occurrence of type S1A serine proteases in sponge and jellyfish
    J Mol Evol55, 790-794.
  32. [YEAR:23-10-2002]Sichler,K., Hopfner,K.P., Kopetzki,E., Huber,R., Bode,W. and Brandstetter,H.
    The influence of residue 190 in the S1 site of trypsin-like serine proteases on substrate selectivity is universally conserved
    FEBS Lett530, 220-224. PubMed  Europe PubMed DOI
    33. 2001
  33. Bachovchin,W.W.
    Contributions of NMR spectroscopy to the study of hydrogen bonds in serine protease active sites
    Magn Reson Chem39, S199-S213.
  34. [YEAR:12-1-2001]Hooper,J.D., Clements,J.A., Quigley,J.P. and Antalis,T.M.
    Type II transmembrane serine proteases. Insights into an emerging class of cell surface proteolytic enzymes
    J Biol Chem276, 857-860. PubMed  Europe PubMed DOI
  35. Wilmouth,R.C., Edman,K., Neutze,R., Wright,P.A., Clifton,I.J., Schneider,T.R., Schofield,C.J. and Hajdu,J.
    X-ray snapshots of serine protease catalysis reveal a tetrahedral intermediate
    Nat Struct Biol8, 689-694. PubMed  Europe PubMed DOI
    36. 2000
  36. [YEAR:3-3-2000]Screen,S.E. and St Leger,R.J.
    Cloning, expression, and substrate specificity of a fungal chymotrypsin. Evidence for lateral gene transfer from an actinomycete bacterium
    J Biol Chem275, 6689-6694. PubMed  Europe PubMed DOI
    37. 1999
  37. Czapinska,H. and Otlewski,J.
    Structural and energetic determinants of the S1-site specificity in serine proteases
    Eur J Biochem260, 571-595. PubMed  Europe PubMed DOI
  38. [YEAR:2-3-1999]Guinto,E.R., Caccia,S., Rose,T., Futterer,K., Waksman,G. and Di Cera,E.
    Unexpected crucial role of residue 225 in serine proteases
    Proc Natl Acad Sci U S A96, 1852-1857. PubMed  Europe PubMed DOI
    39. 1997
  39. Ash,E.L., Sudmeier,J.L., De Fabo,E.C. and Bachovchin,W.W.
    A low-barrier hydrogen bond in the catalytic triad of serine proteases? Theory versus experiment
    Science278, 1128-1132. PubMed  Europe PubMed DOI
  40. Bode,W., Lamba,D. and Renatus,M.
    The "activation domain": a highly cooperative entity within the catalytic domain of serine proteinases
    Fibrinolysis Proteolysis11 Suppl. 3, 45-45.
  41. [YEAR:21-2-1997]Lu,W., Apostol,I., Qasim,M.A., Warne,N., Wynn,R., Zhang,W.L., Anderson,S., Chiang,Y.W., Ogin,E., Rothberg,I., Ryan,K. and Laskowski,M., Jr.
    Binding of amino acid side-chains to S1 cavities of serine proteinases
    J Mol Biol266, 441-461. PubMed  Europe PubMed DOI
  42. [YEAR:28-11-1997]Perona,J.J. and Craik,C.S.
    Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold
    J Biol Chem272, 29987-29990. PubMed  Europe PubMed DOI
    43. 1996
  43. [YEAR:1-10-1996]Dang,Q.D. and Di Cera,E.
    Residue 225 determines the Na(+)-induced allosteric regulation of catalytic activity in serine proteases
    Proc Natl Acad Sci U S A93, 10653-10656. PubMed  Europe PubMed DOI
  44. Lesk,A.M. and Fordham,W.D.
    Conservation and variability in the structures of serine proteinases of the chymotrypsin family
    J Mol Biol258, 501-537. PubMed  Europe PubMed DOI  S
    45. 1995
  45. Perona,J.J. and Craik,C.S.
    Structural basis of substrate specificity in the serine proteases
    Protein Sci4, 337-360. PubMed  Europe PubMed DOI
    46. 1994
  46. [YEAR:5-5-1994]Allaire,M., Chernaia,M.M., Malcolm,B.A. and James,M.N.
    Picornaviral 3C cysteine proteinases have a fold similar to chymotrypsin-like serine proteinases
    Nature369, 72-76. PubMed  Europe PubMed DOI  S
    47. 1990
  47. Le Huerou,I., Wicker,C., Guilloteau,P., Toullec,R. and Puigserver,A.
    Isolation and nucleotide sequence of cDNA clone for bovine pancreatic anionic trypsinogen. Structural identity within the trypsin family
    Eur J Biochem193, 767-773. PubMed  Europe PubMed
    48. 1987
  48. Polgar,L.
    Structure and function of serine proteases
    159-200.
    49. 1978
  49. Dayhoff,M.O., Schwartz,R.M. and Orcutt,B.C.
    A model of evolutionary change in proteins
    353-358.
  50. James,M.N., Delbaere,L.T. and Brayer,G.D.
    Amino acid sequence alignment of bacterial and mammalian pancreatic serine proteases based on topological equivalences
    Can J Biochem56, 396-402. PubMed  Europe PubMed  S
    51. 1977
  51. Kraut,J.
    Serine proteases: structure and mechanism of catalysis
    Annu Rev Biochem46, 331-358. PubMed  Europe PubMed DOI
    52. 1975
  52. Delbaere,L.T., Hutcheon,W.L., James,M.N. and Thiessen,W.E.
    Tertiary structural differences between microbial serine proteases and pancreatic serine enzymes
    Nature257, 758-763. PubMed  Europe PubMed  S
    53. 1973
  53. [YEAR:25-2-1973]Fersht,A.R. and Sperling,J.
    The charge relay system in chymotrypsin and chymotrypsinogen
    J Mol Biol74, 137-149. PubMed  Europe PubMed
    54. 1972
  54. Polgar,L.
    On the role of hydrogen-bonding system in the catalysis by serine proteases
    Acta Biochim Biophys Acad Sci Hung7, 29-34. PubMed  Europe PubMed
    55. 1970
  55. Hartley,B.S.
    Homologies in serine proteinases
    Philos Trans R Soc Lond B Biol Sci257, 77-87. PubMed  Europe PubMed
    56. 1965
  56. Hartley,B.S., Brown,J.R., Kauffman,D.L. and Smillie,L.B.
    Evolutionary similarities between pancreatic proteolytic enzymes
    Nature207, 1157-1159. PubMed  Europe PubMed DOI
    57. 1964
  57. Smillie,L.B. and Hartley,B.S.
    Histidine sequences in the active centres of some "serine" enzymes
    J Mol Biol10, 183-185. PubMed  Europe PubMed

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