Literature for peptidase C16.012: coronavirus COVID-19 papain-like peptidase

Summary Alignment Sequences Sequence features Distribution Literature Substrates

(Topics flags: T Target, K Knockout, I Inhibitor, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

    2025
  1. Bader,M., Calleja,D.J., Devine,S.M., Kuchel,N.W., Lu,B.G.C., Wu,X., Birkinshaw,R.W., Bhandari,R., Loi,K., Volpe,R., Khakham,Y., Au,A.E., Blackmore,T.R., Mackiewicz,L., Dayton,M., Schaefer,J., Scherer,L., Stock,A.T., Cooney,J.P., Schoffer,K., Maluenda,A., Kleeman,E.A., Davidson,K.C., Allison,C.C., Ebert,G., Chen,G., Katneni,K., Klemm,T.A., Nachbur,U., Georgy,S.R., Czabotar,P.E., Hannan,A.J., Putoczki,T.L., Tanzer,M., Pellegrini,M., Lechtenberg,B.C., Charman,S.A., Call,M.J., Mitchell,J.P., Lowes,K.N., Lessene,G., Doerflinger,M. and Komander,D.
    A novel PLpro inhibitor improves outcomes in a pre-clinical model of long COVID
    Nat Commun16, 2900-2900. PubMed  Europe PubMed DOI
  2. De Falco,A., Greene-Cramer,R., Surina,B.A., Zakian,S., Acton,T.B., Ramelot,T.A. and Montelione,G.T.
    From Plasmid to Pure Protein: Production and Characterization of SARS-CoV-2 PL (pro)
    bioRxiv PubMed  Europe PubMed DOI
  3. Gu,X., Zhang,X., Zhang,X., Wang,X., Sun,W., Zhang,Y. and Hu,Z.
    Unveiling the mechanism of action of a novel natural dual inhibitor of SARS-CoV-2 Mpro and PLpro with molecular dynamics simulations
    Nat Prod Bioprospect15, 3-3. PubMed  Europe PubMed DOI  I
  4. Jadhav,P., Liang,X., Ansari,A., Tan,B., Tan,H., Li,K., Chi,X., Ford,A., Ruiz,F.X., Arnold,E., Deng,X. and Wang,J.
    Design of quinoline SARS-CoV-2 papain-like protease inhibitors as oral antiviral drug candidates
    Nat Commun16, 1604-1604. PubMed  Europe PubMed DOI  I
  5. Li,K., Jadhav,P., Wen,Y., Tan,H. and Wang,J.
    Development of a Fluorescence Polarization Assay for the SARS-CoV-2 Papain-like Protease
    ACS Pharmacol Transl Sci8, 774-784. PubMed  Europe PubMed DOI
  6. 2024
  7. Akasov,R.A., Chepikova,O.E., Pallaeva,T.N., Gorokhovets,N.V., Siniavin,A.E., Gushchin,V.A., Savvateeva,L.V., Vinokurov,I.A., Khochenkov,D.A., Zamyatnin,A.A., Jr. and Khaydukov,E.V.
    Evaluation of molecular mechanisms of riboflavin anti-COVID-19 action reveals anti-inflammatory efficacy rather than antiviral activity
    Biochim Biophys Acta Gen Subj1868, 130582-130582. PubMed  Europe PubMed DOI
  8. Armstrong,L.A., Lange,S.M., Cesare,V., Matthews,S.P., Nirujogi,R.S., Cole,I., Hope,A., Cunningham,F., Toth,R., Mukherjee,R., Bojkova,D., Gruber,F., Gray,D., Wyatt,P.G., Cinatl,J., Dikic,I., Davies,P. and Kulathu,Y.
    Correction: Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies
    PLoS ONE19, e0302418-e0302418. PubMed  Europe PubMed DOI
  9. Cesar Ramos de Jesus,H., Solis,N., Machado,Y., Pablos,I., Bell,P.A., Kappelhoff,R., Grin,P.M., Sorgi,C.A., Butler,G.S. and Overall,C.M.
    Optimization of quenched fluorescent peptide substrates of SARS-CoV-2 3CL(pro) main protease (Mpro) from proteomic identification of P6-P6' active site specificity
    J Virole0004924-e0004924. PubMed  Europe PubMed DOI
  10. Chan,H.T.H., Brewitz,L., Lukacik,P., Strain-Damerell,C., Walsh,M.A., Schofield,C.J. and Duarte,F.
    Studies on the selectivity of the SARS-CoV-2 papain-like protease reveal the importance of the P2' proline of the viral polyprotein
    RSC Chem Biol5, 117-130. PubMed  Europe PubMed DOI
  11. Cho,B.H., Kim,J. and Jang,Y.S.
    The Papain-like Protease Domain of Severe Acute Respiratory Syndrome Coronavirus 2 Conjugated with Human Beta-Defensin 2 and Co1 Induces Mucosal and Systemic Immune Responses against the Virus
    Vaccines (Basel)12, PubMed  Europe PubMed DOI
  12. Ciaglia,T., Vestuto,V., Di Sarno,V., Musella,S., Smaldone,G., Di Matteo,F., Napolitano,V., Miranda,M.R., Pepe,G., Basilicata,M.G., Novi,S., Capolupo,I., Bifulco,G., Campiglia,P., Gomez-Monterrey,I., Snoeck,R., Andrei,G., Manfra,M., Ostacolo,C., Lauro,G. and Bertamino,A.
    Peptidomimetics as potent dual SARS-CoV-2 cathepsin-L and main protease inhibitors: In silico design, synthesis and pharmacological characterization
    Eur J Med Chem266, 116128-116128. PubMed  Europe PubMed DOI  I
  13. Diogo,M.A., Cabral,A.G.T. and de Oliveira,R.B.
    Advances in the Search for SARS-CoV-2 M(pro) and PL(pro) Inhibitors
    Pathogens13, PubMed  Europe PubMed DOI  V
  14. Jadhav,P., Huang,B., Osipiuk,J., Zhang,X., Tan,H., Tesar,C., Endres,M., Jedrzejczak,R., Tan,B., Deng,X., Joachimiak,A., Cai,J. and Wang,J.
    Structure-based design of SARS-CoV-2 papain-like protease inhibitors
    Eur J Med Chem264, 116011-116011. PubMed  Europe PubMed DOI  I
  15. Kerti,L. and Frecer,V.
    Design of inhibitors of SARS-CoV-2 papain-like protease deriving from GRL0617: Structure-activity relationships
    Bioorg Med Chem113, 117909-117909. PubMed  Europe PubMed DOI  V  I
  16. Kiba,Y., Tanikawa,T. and Kitamura,M.
    Ciclesonide Inhibits SARS-CoV-2 Papain-Like Protease in Vitro
    Biol Pharm Bull47, 965-966. PubMed  Europe PubMed DOI  I
  17. Li,M., Bei,Z.C., Yuan,Y., Wang,B., Zhang,D., Xu,L., Zhao,L., Xu,Q. and Song,Y.
    In-cell bioluminescence resonance energy transfer (BRET)-based assay uncovers ceritinib and CA-074 as SARS-CoV-2 papain-like protease inhibitors
    J Enzyme Inhib Med Chem39, 2387417-2387417. PubMed  Europe PubMed DOI  I
  18. Li,X. and Song,Y.
    Targeting SARS-CoV-2 nonstructural protein 3: Function, structure, inhibition, and perspective in drug discovery
    Drug Discov Today29, 103832-103832. PubMed  Europe PubMed DOI  V
  19. Lu,Y., Yang,Q., Ran,T., Zhang,G., Li,W., Zhou,P., Tang,J., Dai,M., Zhong,J., Chen,H., He,P., Zhou,A., Xue,B., Chen,J., Zhang,J., Yang,S., Wu,K., Wu,X., Tang,M., Zhang,W.K., Guo,D., Chen,X., Chen,H. and Shang,J.
    Discovery of orally bioavailable SARS-CoV-2 papain-like protease inhibitor as a potential treatment for COVID-19
    Nat Commun15, 10169-10169. PubMed  Europe PubMed DOI  I
  20. Patel,D.K., Kumar,H. and Sobhia,M.E.
    Exploring the binding dynamics of covalent inhibitors within active site of PL(pro) in SARS-CoV-2
    Comput Biol Chem112, 108132-108132. PubMed  Europe PubMed DOI
  21. Rhamadianti,A.F., Abe,T., Tanaka,T., Ono,C., Katayama,H., Makino,Y., Deng,L., Matsui,C., Moriishi,K., Shima,F., Matsuura,Y. and Shoji,I.
    SARS-CoV-2 papain-like protease inhibits ISGylation of the viral nucleocapsid protein to evade host anti-viral immunity
    J Virole0085524-e0085524. PubMed  Europe PubMed DOI
  22. Shen,S., Guo,H., Li,Y., Zhang,L., Tang,Y., Li,H., Li,X., Wang,P.H., Yu,X.F. and Wei,W.
    SARS-CoV-2 and oncolytic EV-D68-encoded proteases differentially regulate pyroptosis
    J Virol98, e0190923-e0190923. PubMed  Europe PubMed DOI
  23. Shinohara,K., Kobayakawa,T., Tsuji,K., Takamatsu,Y., Mitsuya,H. and Tamamura,H.
    Naphthalen-1-ylethanamine-containing small molecule inhibitors of the papain-like protease of SARS-CoV-2
    Eur J Med Chem280, 116963-116963. PubMed  Europe PubMed DOI
  24. Tan,B., Zhang,X., Ansari,A., Jadhav,P., Tan,H., Li,K., Chopra,A., Ford,A., Chi,X., Ruiz,F.X., Arnold,E., Deng,X. and Wang,J.
    Design of a SARS-CoV-2 papain-like protease inhibitor with antiviral efficacy in a mouse model
    Science383, 1434-1440. PubMed  Europe PubMed DOI
  25. Tan,B., Liang,X., Ansari,A., Jadhav,P., Tan,H., Li,K., Ruiz,F.X., Arnold,E., Deng,X. and Wang,J.
    Structure-Based Design of Covalent SARS-CoV-2 Papain-like Protease Inhibitors
    J Med Chem PubMed  Europe PubMed DOI
  26. Taylor,A.J., Amporndanai,K., Rietz,T.A., Zhao,B., Thiruvaipati,A., Wei,Q., South,T.M., Crow,M.M., Apakama,C., Sensintaffar,J.L., Phan,J., Lee,T. and Fesik,S.W.
    Fragment-Based Screen of SARS-CoV-2 Papain-like Protease (PL(pro))
    ACS Med Chem Lett15, 1351-1357. PubMed  Europe PubMed DOI
  27. 2023
  28. Bello,S.O., Imam,M.U., Bello,M.B., Yunusa,A., Ahmed Adamu,A., Shuaibu,A., Igumbor,E.U., Habib,Z.G., Popoola,M.A., Ochu,C.L., Yahaya Bello,A., Deeni,Y.Y. and Okoye,I.
    Erythromycin, retapamulin, pyridoxine, folic acid, and ivermectin inhibit cytopathic effect, papain-like protease, and M(PRO) enzymes of SARS-CoV-2
    Front Cell Infect Microbiol13, 1273982-1273982. PubMed  Europe PubMed DOI  I
  29. Brewitz,L., Henry Chan,H.T., Lukacik,P., Strain-Damerell,C., Walsh,M.A., Duarte,F. and Schofield,C.J.
    Mass spectrometric assays monitoring the deubiquitinase activity of the SARS-CoV-2 papain-like protease inform on the basis of substrate selectivity and have utility for substrate identification
    Bioorg Med Chem95, 117498-117498. PubMed  Europe PubMed DOI
  30. Brian Chia,C.S. and Pheng Lim,S.
    A Patent Review on SARS Coronavirus Papain-Like Protease (PL(pro) ) Inhibitors
    ChemMedChem18, e202300216-e202300216. PubMed  Europe PubMed DOI  V
  31. Chang,J., Kim,J., Hong,S., Jeong,K., Kim,S. and Lee,W.
    Protocol for in vitro fluorescence assay of papain-like protease and cell-based immunofluorescence assay of coronavirus infection
    STAR Protoc4, 102295-102295. PubMed  Europe PubMed DOI
  32. Duan,L., Tang,B., Luo,S., Xiong,D., Wang,Q., Xu,X. and Zhang,J.Z.H.
    Entropy driven cooperativity effect in multi-site drug optimization targeting SARS-CoV-2 papain-like protease
    Cell Mol Life Sci80, 313-313. PubMed  Europe PubMed DOI
  33. Ghosh,A.K., Shahabi,D., Imhoff,M.E.C., Kovela,S., Sharma,A., Hattori,S.I., Higashi-Kuwata,N., Mitsuya,H. and Mesecar,A.D.
    SARS-CoV-2 papain-like protease (PLpro) inhibitory and antiviral activity of small molecule derivatives for drug leads
    Bioorg Med Chem Lett96, 129489-129489. PubMed  Europe PubMed DOI
  34. He,Z., Yuan,J., Zhang,Y., Li,R., Mo,M., Wang,Y. and Ti,H.
    Recent advances towards natural plants as potential inhibitors of SARS-Cov-2 targets
    Pharm Biol61, 1186-1210. PubMed  Europe PubMed DOI  V
  35. Kattula,B., Reddi,B., Jangam,A., Naik,L., Adimoolam,B.M., Vavilapalli,S., Are,S., Thota,J.R., Jadav,S.S., Arifuddin,M. and Addlagatta,A.
    Development of 2-chloroquinoline based heterocyclic frameworks as dual inhibitors of SARS-CoV-2 M(Pro) and PL(Pro)
    Int J Biol Macromol242, 124772-124772. PubMed  Europe PubMed DOI  I
  36. Kosenko,M., Onkhonova,G., Susloparov,I. and Ryzhikov,A.
    SARS-CoV-2 proteins structural studies using synchrotron radiation
    Biophys Rev15, 1185-1194. PubMed  Europe PubMed DOI
  37. Liang,Q., Huang,Y., Wang,M., Kuang,D., Yang,J., Yi,Y., Shi,H., Li,J., Yang,J. and Li,G.
    An electrochemical biosensor for SARS-CoV-2 detection via its papain-like cysteine protease and the protease inhibitor screening
    Chem Eng J452, 139646-139646. PubMed  Europe PubMed DOI
  38. Moghadasi,S.A., Heilmann,E., Khalil,A.M., Nnabuife,C., Kearns,F.L., Ye,C., Moraes,S.N., Costacurta,F., Esler,M.A., Aihara,H., von Laer,D., Martinez-Sobrido,L., Palzkill,T., Amaro,R.E. and Harris,R.S.
    Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors
    Sci Adv9, eade8778-eade8778. PubMed  Europe PubMed DOI
  39. Shao,Q., Xiong,M., Li,J., Hu,H., Su,H. and Xu,Y.
    Unraveling the catalytic mechanism of SARS-CoV-2 papain-like protease with allosteric modulation of C270 mutation using multiscale computational approaches
    Chem Sci14, 4681-4696. PubMed  Europe PubMed DOI
  40. Tan,H., Hu,Y. and Wang,J.
    FlipGFP protease assay for evaluating in vitro inhibitory activity against SARS-CoV-2 M(pro) and PL(pro)
    STAR Protoc4, 102323-102323. PubMed  Europe PubMed DOI
  41. Wang,Q., Chen,G., He,J., Li,J., Xiong,M., Su,H., Li,M., Hu,H. and Xu,Y.
    Structure-Based Design of Potent Peptidomimetic Inhibitors Covalently Targeting SARS-CoV-2 Papain-like Protease
    Int J Mol Sci24, PubMed  Europe PubMed DOI
  42. Wu,Y., Pegan,S.D., Crich,D., Lou,L., Mullininx,L.N., Starling,E.B., Booth,C., Chishom,A.E., Chang,K.Y. and Xie,Z.R.
    Identifying Drug Candidates for COVID-19 with Large-Scale Drug Screening
    Int J Mol Sci24, PubMed  Europe PubMed DOI
  43. Yang,M., Mariano,J., Su,R., Smith,C.E., Das,S., Gill,C., Andresson,T., Loncarek,J., Tsai,Y.C. and Weissman,A.M.
    SARS-CoV-2 papain-like protease plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
    J Biol Chem299, 105346-105346. PubMed  Europe PubMed DOI
  44. Yevsieieva,L.V., Lohachova,K.O., Kyrychenko,A., Kovalenko,S.M., Ivanov,V.V. and Kalugin,O.N.
    Main and papain-like proteases as prospective targets for pharmacological treatment of coronavirus SARS-CoV-2
    RSC Adv13, 35500-35524. PubMed  Europe PubMed DOI  V
  45. Zhao,K., Li,Y., Guo,M., Ma,L. and Dang,B.
    Identification of SARS-CoV-2 PLpro and 3CLpro human proteome substrates using substrate phage display coupled with protein network analysis
    J Biol Chem299, 104831-104831. PubMed  Europe PubMed DOI
  46. 2022
  47. Hu,H., Wang,Q., Su,H., Shao,Q., Zhao,W., Chen,G., Li,M. and Xu,Y.
    Identification of Cysteine 270 as a Novel Site for Allosteric Modulators of SARS-CoV-2 Papain-Like Protease
    Angew Chem Int Ed Engl61, e202212378-e202212378. PubMed  Europe PubMed DOI
  48. Jiang,H., Yang,P. and Zhang,J.
    Potential Inhibitors Targeting Papain-Like Protease of SARS-CoV-2: Two Birds With One Stone
    Front Chem10, 822785-822785. PubMed  Europe PubMed DOI  V
  49. Kladnik,J., Dolinar,A., Kljun,J., Perea,D., Grau-Exposito,J., Genesca,M., Novinec,M., Buzon,M.J. and Turel,I.
    Zinc pyrithione is a potent inhibitor of PL(Pro) and cathepsin L enzymes with ex vivo inhibition of SARS-CoV-2 entry and replication
    J Enzyme Inhib Med Chem37, 2158-2168. PubMed  Europe PubMed DOI
  50. Majerova,T. and Konvalinka,J.
    Viral proteases as therapeutic targets
    Mol Aspects Med88, 101159-101159. PubMed  Europe PubMed DOI  V  I
  51. Meewan,I., Kattoula,J., Kattoula,J.Y., Skinner,D., Fajtova,P., Giardini,M.A., Woodworth,B., McKerrow,J.H., Lage de Siqueira-Neto,J., O'Donoghue,A.J. and Abagyan,R.
    Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L
    Pharmaceuticals (Basel)15, PubMed  Europe PubMed DOI  I
  52. Narayanan,A., Toner,S.A. and Jose,J.
    Structure-based inhibitor design and repurposing clinical drugs to target SARS-CoV-2 proteases
    Biochem Soc Trans50, 151-165. PubMed  Europe PubMed DOI
  53. Oki,N., Yamada,S., Tanaka,T., Fukui,H., Hatakeyama,S. and Okumura,F.
    Curcumin partly prevents ISG15 activation via ubiquitin-activating enzyme E1-like protein and decreases ISGylation
    Biochem Biophys Res Commun625, 94-101. PubMed  Europe PubMed DOI  I
  54. Rieder,A.S., Deniz,B.F., Netto,C.A. and Wyse,A.T.S.
    A Review of In Silico Research, SARS-CoV-2, and Neurodegeneration: Focus on Papain-Like Protease
    Neurotox Res40, 1553-1569. PubMed  Europe PubMed DOI  V
  55. Shetler,C.L., Ferreira,J.C., Cardoso,T.H.S., Silva,E.M.A., Saksena,N.K. and Rabeh,W.M.
    Therapeutic potential of metal ions for COVID-19: insights from the papain-like protease of SARS-CoV-2
    Biochem J479, 2175-2193. PubMed  Europe PubMed DOI
  56. Tan,H., Hu,Y., Jadhav,P., Tan,B. and Wang,J.
    Progress and Challenges in Targeting the SARS-CoV-2 Papain-like Protease
    J Med Chem65, 7561-7580. PubMed  Europe PubMed DOI
  57. Tan,J., Wu,Z., Hu,P., Gan,L., Wang,Y. and Zhang,D.
    Association between Mutations in Papain-like Protease (PLpro) of SARS-CoV-2 with COVID-19 Clinical Outcomes
    Pathogens11, PubMed  Europe PubMed DOI
  58. Ullrich,S. and Nitsche,C.
    SARS-CoV-2 Papain-Like Protease: Structure, Function and Inhibition
    Chembiochem23, e202200327-e202200327. PubMed  Europe PubMed DOI  V
  59. Yan,H., Liu,Z., Yan,G., Liu,X., Liu,X., Wang,Y. and Chen,Y.
    A robust high-throughput fluorescence polarization assay for rapid screening of SARS-CoV-2 papain-like protease inhibitors
    Virology574, 18-24. PubMed  Europe PubMed DOI
  60. Yuan,S., Gao,X., Tang,K., Cai,J.P., Hu,M., Luo,P., Wen,L., Ye,Z.W., Luo,C., Tsang,J.O., Chan,C.C., Huang,Y., Cao,J., Liang,R., Qin,Z., Qin,B., Yin,F., Chu,H., Jin,D.Y., Sun,R., Chan,J.F., Cui,S. and Yuen,K.Y.
    Targeting papain-like protease for broad-spectrum coronavirus inhibition
    Protein Cell13, 940-953. PubMed  Europe PubMed DOI
  61. Zapata-Cardona,M.I., Florez-Alvarez,L., Zapata-Builes,W., Guerra-Sandoval,A.L., Guerra-Almonacid,C.M., Hincapie-Garcia,J., Rugeles,M.T. and Hernandez,J.C.
    Atorvastatin Effectively Inhibits Ancestral and Two Emerging Variants of SARS-CoV-2 in vitro
    Front Microbiol13, 721103-721103. PubMed  Europe PubMed DOI
  62. 2021
  63. Alabbas,A.B. and Alamri,M.A.
    Analyzing the Effect of Mutations in SARS-CoV2 Papain-Like Protease from Saudi Isolates on Protein Structure and Drug-Protein Binding: Molecular Modelling and Dynamics Studies
    Saudi J Biol Sci PubMed  Europe PubMed DOI
  64. Amin,S.A., Banerjee,S., Gayen,S. and Jha,T.
    Protease targeted COVID-19 drug discovery: What we have learned from the past SARS-CoV inhibitors?
    Eur J Med Chem215, 113294-113294. PubMed  Europe PubMed DOI
  65. Ayipo,Y.O., Yahaya,S.N., Alananzeh,W.A., Babamale,H.F. and Mordi,M.N.
    Pathomechanisms, therapeutic targets and potent inhibitors of some beta-coronaviruses from bench-to-bedside
    Infect Genet Evol93, 104944-104944. PubMed  Europe PubMed DOI  V  I
  66. Bhowmik,D., Sharma,R.D., Prakash,A. and Kumar,D.
    Identification of Nafamostat and VR23 as COVID-19 drug candidates by targeting 3CL(pro) and PL(pro)
    J Mol Struct1233, 130094-130094. PubMed  Europe PubMed DOI  I
  67. Hariyono,P., Patramurti,C., Candrasari,D.S. and Hariono,M.
    An integrated virtual screening of compounds from Carica papaya leaves against multiple protein targets of SARS-Coronavirus-2
    Results Chem3, 100113-100113. PubMed  Europe PubMed DOI
  68. Jamalan,M., Barzegari,E. and Gholami-Borujeni,F.
    Structure-Based Screening to Discover New Inhibitors for Papain-like Proteinase of SARS-CoV-2: An In Silico Study
    J Proteome Res20, 1015-1026. PubMed  Europe PubMed DOI
  69. Kumar,A., Loharch,S., Kumar,S., Ringe,R.P. and Parkesh,R.
    Exploiting cheminformatic and machine learning to navigate the available chemical space of potential small molecule inhibitors of SARS-CoV-2
    Comput Struct Biotechnol J19, 424-438. PubMed  Europe PubMed DOI  I
  70. Kuo,C.J., Chao,T.L., Kao,H.C., Tsai,Y.M., Liu,Y.K., Wang,L.H., Hsieh,M.C., Chang,S.Y. and Liang,P.H.
    Kinetic characterization and inhibitor screening for the proteases leading to identification of drugs against SARS-CoV-2
    Antimicrob Agents Chemother PubMed  Europe PubMed DOI
  71. Lim,C.T., Tan,K.W., Wu,M., Ulferts,R., Armstrong,L.A., Ozono,E., Drury,L.S., Milligan,J.C., Zeisner,T.U., Zeng,J., Weissmann,F., Canal,B., Bineva-Todd,G., Howell,M., O'Reilly,N., Beale,R., Kulathu,Y., Labib,K. and Diffley,J.F.X.
    Identifying SARS-CoV-2 antiviral compounds by screening for small molecule inhibitors of Nsp3 papain-like protease
    Biochem J478, 2517-2531. PubMed  Europe PubMed DOI
  72. Liu,G., Lee,J.H., Parker,Z.M., Acharya,D., Chiang,J.J., van Gent,M., Riedl,W., Davis-Gardner,M.E., Wies,E., Chiang,C. and Gack,M.U.
    ISG15-dependent activation of the sensor MDA5 is antagonized by the SARS-CoV-2 papain-like protease to evade host innate immunity
    Nat Microbiol6, 467-478. PubMed  Europe PubMed DOI
  73. Lv,Z., Cano,K.E., Jia,L., Drag,M., Huang,T.T. and Olsen,S.K.
    Targeting SARS-CoV-2 Proteases for COVID-19 Antiviral Development
    Front Chem9, 819165-819165. PubMed  Europe PubMed DOI  V
  74. Meyer,B., Chiaravalli,J., Gellenoncourt,S., Brownridge,P., Bryne,D.P., Daly,L.A., Grauslys,A., Walter,M., Agou,F., Chakrabarti,L.A., Craik,C.S., Eyers,C.E., Eyers,P.A., Gambin,Y., Jones,A.R., Sierecki,E., Verdin,E., Vignuzzi,M. and Emmott,E.
    Characterising proteolysis during SARS-CoV-2 infection identifies viral cleavage sites and cellular targets with therapeutic potential
    Nat Commun12, 5553-5553. PubMed  Europe PubMed DOI  K
  75. Mohamud,Y., Xue,Y.C., Liu,H., Ng,C.S., Bahreyni,A., Jan,E. and Luo,H.
    The papain-like protease of coronaviruses cleaves ULK1 to disrupt host autophagy
    Biochem Biophys Res Commun540, 75-82. PubMed  Europe PubMed DOI
  76. Rajpoot,S., Alagumuthu,M. and Baig,M.S.
    Dual targeting of 3CL(pro) and PL(pro) of SARS-CoV-2: A novel structure-based design approach to treat COVID-19
    Curr Res Struct Biol3, 9-18. PubMed  Europe PubMed DOI
  77. Reynolds,N.D., Aceves,N.M., Liu,J.L., Compton,J.R., Leary,D.H., Freitas,B.T., Pegan,S.D., Doctor,K.Z., Wu,F.Y., Hu,X. and Legler,P.M.
    The SARS-CoV-2 SSHHPS Recognized by the Papain-like Protease
    ACS Infect Dis7, 1483-1502. PubMed  Europe PubMed DOI
  78. Shah,A., Patel,V. and Parmar,B.
    Discovery of Some Antiviral Natural products to fight against Novel Corona Virus (SARS-CoV-2) using Insilico approach
    Comb Chem High Throughput Screen24, 1271-1280. PubMed  Europe PubMed DOI  I
  79. Sharma,A., Kaliya,K. and Maurya,S.K.
    Recent Advances in Discovery of Potent Proteases Inhibitors Targeting the SARS Coronaviruses
    Curr Top Med Chem21, 307-328. PubMed  Europe PubMed DOI  V
  80. Sivakumar,D. and Stein,M.
    Binding of SARS-CoV Covalent Non-Covalent Inhibitors to the SARS-CoV-2 Papain-Like Protease and Ovarian Tumor Domain Deubiquitinases
    Biomolecules11, PubMed  Europe PubMed DOI
  81. Steuten,K., Kim,H., Widen,J.C., Babin,B.M., Onguka,O., Lovell,S., Bolgi,O., Cerikan,B., Neufeldt,C.J., Cortese,M., Muir,R.K., Bennett,J.M., Geiss-Friedlander,R., Peters,C., Bartenschlager,R. and Bogyo,M.
    Challenges for Targeting SARS-CoV-2 Proteases as a Therapeutic Strategy for COVID-19
    ACS Infect Dis PubMed  Europe PubMed DOI
  82. Tian,D., Liu,Y., Liang,C., Xin,L., Xie,X., Zhang,D., Wan,M., Li,H., Fu,X., Liu,H. and Cao,W.
    An update review of emerging small-molecule therapeutic options for COVID-19
    Biomed Pharmacother137, 111313-111313. PubMed  Europe PubMed DOI
  83. Welker,A., Kersten,C., Muller,C., Madhugiri,R., Zimmer,C., Muller,P., Zimmermann,R., Hammerschmidt,S., Maus,H., Ziebuhr,J., Sotriffer,C. and Schirmeister,T.
    Structure-Activity Relationships of Benzamides and Isoindolines Designed as SARS-CoV Protease Inhibitors Effective against SARS-CoV-2
    ChemMedChem16, 340-354. PubMed  Europe PubMed DOI  I
  84. Xia,Z., Sacco,M.D., Ma,C., Townsend,J.A., Kitamura,N., Hu,Y., Ba,M., Szeto,T., Zhang,X., Meng,X., Zhang,F., Xiang,Y., Marty,M.T., Chen,Y. and Wang,J.
    Discovery of SARS-CoV-2 papain-like protease inhibitors through a combination of high-throughput screening and FlipGFP-based reporter assay
    bioRxiv PubMed  Europe PubMed DOI  I
  85. Xu,Y., Chen,K., Pan,J., Lei,Y., Zhang,D., Fang,L., Tang,J., Chen,X., Ma,Y., Zheng,Y., Zhang,B., Zhou,Y., Zhan,J. and Xu,W.
    Repurposing clinically approved drugs for COVID-19 treatment targeting SARS-CoV-2 papain-like protease
    Int J Biol Macromol188, 137-146. PubMed  Europe PubMed DOI
  86. Yan,F. and Gao,F.
    An overview of potential inhibitors targeting non-structural proteins 3 (PL(pro) and Mac1) and 5 (3CL(pro)/M(pro)) of SARS-CoV-2
    Comput Struct Biotechnol J19, 4868-4883. PubMed  Europe PubMed DOI  V
  87. Yan,S. and Wu,G.
    Spatial and temporal roles of SARS-CoV PL(pro) -A snapshot
    FASEB J35, e21197-e21197. PubMed  Europe PubMed DOI
  88. Yuan,F., Wang,L., Fang,Y. and Wang,L.
    Global SNP analysis of 11,183 SARS-CoV-2 strains reveals high genetic diversity
    Transbound Emerg Dis68, 3288-3304. PubMed  Europe PubMed DOI
  89. 2020
  90. Alajmi,M.F., Azhar,A., Owais,M., Rashid,S., Hasan,S., Hussain,A. and Rehman,M.T.
    Antiviral potential of some novel structural analogs of standard drugs repurposed for the treatment of COVID-19
    J Biomol Struct Dyn1-13. PubMed  Europe PubMed DOI  I
  91. Alamri,M.A., Tahir Ul Qamar,M., Mirza,M.U., Alqahtani,S.M., Froeyen,M. and Chen,L.L.
    Discovery of human coronaviruses pan-papain-like protease inhibitors using computational approaches
    J Pharm Anal10, 546-559. PubMed  Europe PubMed DOI
  92. Amin,S.A., Banerjee,S., Ghosh,K., Gayen,S. and Jha,T.
    Protease targeted COVID-19 drug discovery and its challenges: Insight into viral main protease (Mpro) and papain-like protease (PLpro) inhibitors
    Bioorg Med Chem115860-115860. PubMed  Europe PubMed DOI  V
  93. Baildya,N., Khan,A.A., Ghosh,N.N., Dutta,T. and Chattopadhyay,A.P.
    Screening of potential drug from Azadiractha Indica (Neem) extracts for SARS-CoV-2: An insight from molecular docking and MD-simulation studies
    J Mol Struct129390-129390. PubMed  Europe PubMed DOI
  94. Balkrishna,A., Mittal,R. and Arya,V.
    Computational Evidences of Phytochemical Mediated Disruption of PLpro Driven Replication of SARS-CoV-2: A Therapeutic Approach Against COVID-19
    Curr Pharm Biotechnol PubMed  Europe PubMed DOI
  95. Bano,S., Hameed,A., Al-Rashida,M., Iftikhar,S. and Iqbal,J.
    Recent Advances towards Drug Design Targeting the Protease of 2019 novel coronavirus (2019-nCoV)
    Curr Med Chem PubMed  Europe PubMed DOI  V
  96. Bhati,S.
    Structure-based drug designing of naphthalene based SARS-CoV PLpro inhibitors for the treatment of COVID-19
    Heliyon6, e05558-e05558. PubMed  Europe PubMed DOI
  97. Bosken,Y.K., Cholko,T., Lou,Y.C., Wu,K.P. and Chang,C.A.
    Insights Into Dynamics of Inhibitor and Ubiquitin-Like Protein Binding in SARS-CoV-2 Papain-Like Protease
    Front Mol Biosci7, 174-174. PubMed  Europe PubMed DOI
  98. Cannalire,R., Cerchia,C., Beccari,A.R., Di Leva,F.S. and Summa,V.
    Targeting SARS-CoV-2 Proteases and Polymerase for COVID-19 Treatment: State of the Art and Future Opportunities
    J Med Chem PubMed  Europe PubMed DOI
  99. Capasso,C., Nocentini,A. and Supuran,C.T.
    Protease inhibitors targeting the main protease and papain-like protease of coronaviruses
    Expert Opin Ther Pat1-16. PubMed  Europe PubMed DOI  V
  100. Cavasotto,C. and Di Filippo,J.
    In silico Drug Repurposing for COVID-19: Targeting SARS-CoV-2 Proteins through Docking and Consensus Ranking
    Mol Inform PubMed  Europe PubMed DOI
  101. Chowdhury,T., Roymahapatra,G. and Mandal,S.M.
    In Silico Identification of a Potent Arsenic Based Approved Drug Darinaparsin against SARS-CoV-2: Inhibitor of RNA Dependent RNA polymerase (RdRp) and Essential Proteases
    Infect Disord Drug Targets PubMed  Europe PubMed DOI
  102. Claverie,J.M.
    A Putative Role of de-Mono-ADP-Ribosylation of STAT1 by the SARS-CoV-2 Nsp3 Protein in the Cytokine Storm Syndrome of COVID-19
    Viruses12, PubMed  Europe PubMed DOI
  103. Clemente,V., D'Arcy,P. and Bazzaro,M.
    Deubiquitinating Enzymes in Coronaviruses and Possible Therapeutic Opportunities for COVID-19
    Int J Mol Sci21, PubMed  Europe PubMed DOI
  104. Delre,P., Caporuscio,F., Saviano,M. and Mangiatordi,G.F.
    Repurposing Known Drugs as Covalent and Non-covalent Inhibitors of the SARS-CoV-2 Papain-Like Protease
    Front Chem8, 594009-594009. PubMed  Europe PubMed DOI
  105. Dong,S., Sun,J., Mao,Z., Wang,L., Lu,Y.L. and Li,J.
    A guideline for homology modeling of the proteins from newly discovered betacoronavirus, 2019 novel coronavirus (2019-nCoV)
    J Med Virol PubMed  Europe PubMed DOI
  106. Elekofehinti,O.O., Iwaloye,O., Josiah,S.S., Lawal,A.O., Akinjiyan,M.O. and Ariyo,E.O.
    Molecular docking studies, molecular dynamics and ADME/tox reveal therapeutic potentials of STOCK1N-69160 against papain-like protease of SARS-CoV-2
    Mol Divers PubMed  Europe PubMed DOI
  107. Elmezayen,A.D., Al-Obaidi,A., Sahin,A.T. and Yelekci,K.
    Drug repurposing for coronavirus (COVID-19): in silico screening of known drugs against coronavirus 3CL hydrolase and protease enzymes
    J Biomol Struct Dyn1-13. PubMed  Europe PubMed DOI
  108. Freitas,B.T., Durie,I.A., Murray,J., Longo,J.E., Miller,H.C., Crich,D., Hogan,R.J., Tripp,R.A. and Pegan,S.D.
    Characterization and noncovalent inhibition of the deubiquitinase and deISGylase activity of SARS-CoV-2 papain-like protease
    ACS Infect Dis PubMed  Europe PubMed DOI  I
  109. Gao,X., Qin,B., Chen,P., Zhu,K., Hou,P., Wojdyla,J.A., Wang,M. and Cui,S.
    Crystal structure of SARS-CoV-2 papain-like protease
    Acta Pharm Sin B PubMed  Europe PubMed DOI
  110. Ghanbari,R., Teimoori,A., Sadeghi,A., Mohamadkhani,A., Rezasoltani,S., Asadi,E., Jouyban,A. and Sumner,S.C.
    Existing antiviral options against SARS-CoV-2 replication in COVID-19 patients
    Future Microbiol15, 1747-1758. PubMed  Europe PubMed DOI  V
  111. Gioia,M., Ciaccio,C., Calligari,P., De Simone,G., Sbardella,D., Tundo,G., Fasciglione,G.F., di Masi,A., Di Pierro,D., Bocedi,A., Ascenzi,P. and Coletta,M.
    Role of proteolytic enzymes in the COVID-19 infection and promising therapeutic approaches
    Biochem Pharmacol182, 114225-114225. PubMed  Europe PubMed DOI  V
  112. Henderson,J.A., Verma,N. and Shen,J.
    Assessment of Proton-Coupled Conformational Dynamics of SARS and MERS Coronavirus Papain-like Proteases: Implication for Designing Broad-Spectrum Antiviral Inhibitors
    bioRxiv PubMed  Europe PubMed DOI  T
  113. Ibrahim,T.M., Ismail,M.I., Bauer,M.R., Bekhit,A.A. and Boeckler,F.M.
    Supporting SARS-CoV-2 Papain-Like Protease Drug Discovery: In silico Methods and Benchmarking
    Front Chem8, 592289-592289. PubMed  Europe PubMed DOI
  114. Kandeel,M., Abdelrahman,A.H.M., Oh-hashi,K., Ibrahim,A., Venugopala,K.N., Morsy,M.A. and Ibrahim,M.A.A.
    Repurposing of FDA-approved antivirals, antibiotics, anthelmintics, antioxidants, and cell protectives against SARS-CoV-2 papain-like protease
    J Biomol Struct Dyn1-8. PubMed  Europe PubMed DOI  I
  115. Kandeel,M., Kitade,Y., Fayez,M., Venugopala,K.N. and Ibrahim,A.
    The emerging SARS-CoV-2 papain-like protease: Its relationship with recent coronavirus epidemics
    J Med Virol PubMed  Europe PubMed DOI
  116. Khanal,P., Patil,B.M., Chand,J. and Naaz,Y.
    Anthraquinone Derivatives as an Immune Booster and their Therapeutic Option Against COVID-19
    Nat Prod Bioprospect PubMed  Europe PubMed DOI
  117. Klemm,T., Ebert,G., Calleja,D.J., Allison,C.C., Richardson,L.W., Bernardini,J.P., Lu,B.G., Kuchel,N.W., Grohmann,C., Shibata,Y., Gan,Z.Y., Cooney,J.P., Doerflinger,M., Au,A.E., Blackmore,T.R., van der Heden van Noort, Geurink,P.P., Ovaa,H., Newman,J., Riboldi-Tunnicliffe,A., Czabotar,P.E., Mitchell,J.P., Feltham,R., Lechtenberg,B.C., Lowes,K.N., Dewson,G., Pellegrini,M., Lessene,G. and Komander,D.
    Mechanism and inhibition of the papain-like protease, PLpro, of SARS-CoV-2
    EMBO Je106275-e106275. PubMed  Europe PubMed DOI
  118. Krishnamurthy,P.T.
    Coronavirus Disease 2019: Virology and Drug Targets
    Infect Disord Drug Targets PubMed  Europe PubMed DOI  V
  119. Ladoux,A., Azoulay,S. and Dani,C.
    [SARS-CoV-2 protease: an excellent target to develop drugs against COVID-19]
    Med Sci (Paris)36, 555-558. PubMed  Europe PubMed DOI
  120. Li,D., Luan,J. and Zhang,L.
    Molecular docking of potential SARS-CoV-2 papain-like protease inhibitors
    Biochem Biophys Res Commun PubMed  Europe PubMed DOI
  121. Li,M., Ye,G., Si,Y., Shen,Z., Liu,Z., Shi,Y., Xiao,S., Fu,Z.F. and Peng,G.
    Structure of the Multiple Functional Domains from Coronavirus Nonstructural Protein 3
    Emerg Microbes Infect1-50. PubMed  Europe PubMed DOI
  122. Mahdian,S., Ebrahim-Habibi,A. and Zarrabi,M.
    Drug repurposing using computational methods to identify therapeutic options for COVID-19
    J Diabetes Metab Disord1-9. PubMed  Europe PubMed DOI  I
  123. Maiti,B.K.
    Can Papain-like Protease Inhibitors Halt SARS-CoV-2 Replication?
    ACS Pharmacol Transl Sci3, 1017-1019. PubMed  Europe PubMed DOI
  124. Manikyam,H.K. and Joshi,S.K.
    Whole Genome Analysis and Targeted Drug Discovery Using Computational Methods and High Throughput Screening Tools for Emerged Novel Coronavirus (2019-nCoV)
    J Pharm Drug Res3, 341-361. PubMed  Europe PubMed  I
  125. Mohamed,K., Yazdanpanah,N., Saghazadeh,A. and Rezaei,N.
    Computational drug discovery and repurposing for the treatment of COVID-19: A systematic review
    Bioorg Chem104490-104490. PubMed  Europe PubMed DOI  V  I
  126. Mouffouk,C., Mouffouk,S., Mouffouk,S., Hambaba,L. and Haba,H.
    Flavonols as potential antiviral drugs targeting SARS-CoV-2 proteases (3CL(pro) and PL(pro)), spike protein, RNA-dependent RNA polymerase (RdRp) and angiotensin-converting enzyme II receptor (ACE2)
    Eur J Pharmacol891, 173759-173759. PubMed  Europe PubMed DOI
  127. Moustaqil,M., Ollivier,E., Chiu,H.P., Van Tol,S., Rudolffi-Soto,P., Stevens,C., Bhumkar,A., Hunter,D.J.B., Freiberg,A.N., Jacques,D., Lee,B., Sierecki,E. and Gambin,Y.
    SARS-CoV-2 proteases PLpro and 3CLpro cleave IRF3 and critical modulators of inflammatory pathways (NLRP12 and TAB1): implications for disease presentation across species
    Emerg Microbes Infect1-27. PubMed  Europe PubMed DOI
  128. Murugan,N.A., Kumar,S., Jeyakanthan,J. and Srivastava,V.
    Searching for target-specific and multi-targeting organics for Covid-19 in the Drugbank database with a double scoring approach
    Sci Rep10, 19125-19125. PubMed  Europe PubMed DOI  I
  129. Naidoo,D., Roy,A., Kar,P., Mutanda,T. and Anandraj,A.
    Cyanobacterial metabolites as promising drug leads against the M(pro) and PL(pro) of SARS-CoV-2: an in silico analysis
    J Biomol Struct Dyn1-13. PubMed  Europe PubMed DOI
  130. Pang,J., Gao,S., Sun,Z. and Yang,G.
    Discovery of small molecule PLpro inhibitor against COVID-19 using structure-based virtual screening, molecular dynamics simulation, and molecular mechanics/Generalized Born surface area (MM/GBSA) calculation
    Struct Chem1-8. PubMed  Europe PubMed DOI
  131. Patel,D., Athar,M. and Jha,P.C.
    Computational investigation of binding of chloroquinone and hydroxychloroquinone against PLPro of SARS-CoV-2
    J Biomol Struct Dyn1-11. PubMed  Europe PubMed DOI
  132. Pitsillou,E., Liang,J., Ververis,K., Lim,K.W., Hung,A. and Karagiannis,T.C.
    Identification of Small Molecule Inhibitors of the Deubiquitinating Activity of the SARS-CoV-2 Papain-Like Protease: in silico Molecular Docking Studies and in vitro Enzymatic Activity Assay
    Front Chem8, 623971-623971. PubMed  Europe PubMed DOI
  133. Ranjbar,A., Jamshidi,M. and Torabi,S.
    Molecular modelling of the antiviral action of Resveratrol derivatives against the activity of two novel SARS CoV-2 and 2019-nCoV receptors
    Eur Rev Med Pharmacol Sci24, 7834-7844. PubMed  Europe PubMed DOI  I
  134. Shahid,M. and Shahzad-Ul-Hussan,S.
    Structural insights of key enzymes into therapeutic intervention against SARS-CoV-2
    J Struct Biol213, 107690-107690. PubMed  Europe PubMed DOI  V
  135. Shin,D., Mukherjee,R., Grewe,D., Bojkova,D., Baek,K., Bhattacharya,A., Schulz,L., Widera,M., Mehdipour,A.R., Tascher,G., Geurink,P.P., Wilhelm,A., van der Heden van Noort, Ovaa,H., Muller,S., Knobeloch,K.P., Rajalingam,K., Schulman,B.A., Cinatl,J., Hummer,G., Ciesek,S. and Dikic,I.
    Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity
    Nature587, 657-662. PubMed  Europe PubMed DOI  I
  136. Siddiqui,S., Upadhyay,S., Ahmad,R., Gupta,A., Srivastava,A., Trivedi,A., Husain,I., Ahmad,B., Ahamed,M. and Khan,M.A.
    Virtual screening of phytoconstituents from miracle herb nigella sativa targeting nucleocapsid protein and papain-like protease of SARS-CoV-2 for COVID-19 treatment
    J Biomol Struct Dyn1-21. PubMed  Europe PubMed DOI
  137. Smith,E., Davis-Gardner,M.E., Garcia-Ordonez,R.D., Nguyen,T.T., Hull,M., Chen,E., Baillargeon,P., Scampavia,L., Strutzenberg,T., Griffin,P.R., Farzan,M. and Spicer,T.P.
    High-Throughput Screening for Drugs That Inhibit Papain-Like Protease in SARS-CoV-2
    SLAS Discov2472555220963667-2472555220963667. PubMed  Europe PubMed DOI
  138. Swaim,C.D., Perng,Y.C., Zhao,X., Canadeo,L.A., Harastani,H.H., Darling,T.L., Boon,A.C.M., Lenschow,D.J. and Huibregtse,J.M.
    6-Thioguanine blocks SARS-CoV-2 replication by inhibition of PLpro protease activities
    bioRxiv PubMed  Europe PubMed DOI  T
  139. Vardhan,S. and Sahoo,S.K.
    In silico ADMET and molecular docking study on searching potential inhibitors from limonoids and triterpenoids for COVID-19
    Comput Biol Med124, 103936-103936. PubMed  Europe PubMed DOI