Literature for peptidase C09.001: sindbis virus-type nsP2 peptidase
(Topics flags: S Structure, A Assay, P Specificity, I Inhibitor, E Expression, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)
- Sears,J.D., Popov,K.I., Sylvester,P.A., Dickmander,R., Diaz,J., Chang,C.K., Huff,J., Sanders,W., Saba,N.A., Sorensen,M., Drobish,A.M., May,N.A., Namitz,K., Fecko,J., Yennawar,N.H., Morrison,T.E., Tropsha,A., Heise,M.T. and Moorman,N.J.<br>Novel computational pipeline to identify target sites for broad spectrum antiviral drugs<br>Antiviral Res (2026) 245, 106322-106322. PubMed Europe PubMed DOI
- Dansana,J., Purohit,P., Panda,M. and Meher,B.R.<br>Recent advances in phytocompounds as potential Chikungunya virus non-structural protein 2 protease antagonists: A systematic review<br>Phytomedicine (2025) 136, 156359-156359. PubMed Europe PubMed DOI
- Ghoshal,A., Tse,E.G., Hossain,M.A., Asressu,K.H., Merten,E.M., Sears,J.D., Howell,S., Perveen,S., Burdick,J., Morales,N.L., Martinez,S.A., Law,I., Davenport,B.J., Morrison,T.E., Streblow,Z.J., Streblow,D.N., Mordant,A.L., Webb,T.S., Cabrera,A., Herring,L.E., Arrowsmith,C.H., Pearce,K.H., Moorman,N.J., Heise,M.T., Counago,R.M., Brown,P.J. and Willson,T.M.<br>A covalent chemical probe for Chikungunya nsP2 cysteine protease with antialphaviral activity and proteome-wide selectivity<br>Sci Rep (2025) 15, 7264-7264. PubMed Europe PubMed DOI PMC EPMC
- Ghoshal,A., Sears,J.D., Hossain,M.A., Tse,E.G., Howell,S., Burdick,J.E., Morales,N.L., Martinez,S.A., Law,I., Streblow,Z.J., Streblow,D.N., Counago,R.M., Moorman,N.J., Heise,M.T. and Willson,T.M.<br>N-Alkyl Sulfamates as a New Class of nsP2 Cysteine Protease Inhibitors with Broad-Spectrum Antialphaviral Activity<br>J Med Chem (2025) PubMed Europe PubMed DOI I
- Gurunathan,R.S., Rajaram,A., Chandrabose,S. and Singh,S.K.<br>Decoding pH-dependent structural dynamics of CHIKV nsP2 protease: insights from computational antiviral targeting<br>Mol Divers (2025) PubMed Europe PubMed DOI
- He,J., Illingworth,H., Ullrich,S., Ghosh,P., Ton,J., Jackson,C.J. and Nitsche,C.<br>Synthesis, screening and validation of cysteine-reactive fragments as chikungunya virus protease inhibitors<br>Bioorg Med Chem Lett (2025) 122, 130176-130176. PubMed Europe PubMed DOI
- Li,S., Hu,X., Ahn,Y.M., Medina,A., Ye,L., Heffner,A., Messing,S., Denson,J.P., Esposito,D., Lee,E.M. and Martinez,N.J.<br>A quantitative high-throughput screening pipeline to identify small molecule inhibitors of Chikungunya nsP2 protease<br>Sci Rep (2025) 15, 33479-33479. PubMed Europe PubMed DOI PMC EPMC
- Makhaik,S., Rut,W., Choudhary,S., Upadhyay,T., Hao,C., Westberg,M., Bobst,C., Yoo,E., Fejzo,J., Lin,M.Z., Bogyo,M., Thompson,P., Drag,M. and Hardy,J.A.<br>A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity<br>Protein Sci (2025) 34, e70069-e70069. PubMed Europe PubMed DOI PMC EPMC
- Makhaik,S., Rut,W., Choudhary,S., Upadhyay,T., Hao,C., Westberg,M., Bobst,C., Yoo,E., Fejzo,J., Lin,M.Z., Bogyo,M., Thompson,P., Drag,M. and Hardy,J.A.<br>A Robust Fluorogenic Substrate for Chikungunya Virus Protease (nsP2) Activity<br>bioRxiv (2025) PubMed Europe PubMed DOI PMC EPMC
- Mastalipour,M., Gering,I., Coronado,M.A., Gonzalez,J.E.H., Willbold,D. and Eberle,R.J.<br>Novel peptide inhibitor for the Chikungunya virus nsP2 protease: Identification and characterization<br>Curr Res Microb Sci (2025) 8, 100376-100376. PubMed Europe PubMed DOI PMC EPMC I
- Padilha,E.K.A., da Silva,J.C.S. and Silva-Junior,E.F.D.<br>Revealing the water-catalyzed activation of Chikungunya virus non-structural protein 2 (nsP2)<br>J Mol Graph Model (2025) 140, 109129-109129. PubMed Europe PubMed DOI
- Ghoshal,A., Asressu,K.H., Hossain,M.A., Brown,P.J., Nandakumar,M., Vala,A., Merten,E.M., Sears,J.D., Law,I., Burdick,J.E., Morales,N.L., Perveen,S., Pearce,K.H., Popov,K.I., Moorman,N.J., Heise,M.T. and Willson,T.M.<br>Structure Activity of beta-Amidomethyl Vinyl Sulfones as Covalent Inhibitors of Chikungunya nsP2 Cysteine Protease with Antialphavirus Activity<br>J Med Chem (2024) PubMed Europe PubMed DOI I
- Ghoshal,A., Tse,E.G., Hossain,M.A., Asressu,K.H., Merten,E.M., Sears,J.D., Howell,S., Perveen,S., Burdick,J., Morales,N.L., Martinez,S.A., Law,I., Davenport,B.J., Morrison,T.E., Streblow,Z.J., Streblow,D.N., Mordant,A.L., Webb,T.S., Cabrera,A., Herring,L.E., Arrowsmith,C.H., Pearce,K.H., Moorman,N.J., Heise,M.T., Counago,R.M., Brown,P.J. and Willson,T.M.<br>A Covalent Chemical Probe for Chikungunya nsP2 Cysteine Protease with Antialphaviral Activity and Proteome-wide Selectivity<br>Res Sq (2024) PubMed Europe PubMed DOI PMC EPMC
- Merten,E.M., Sears,J.D., Leisner,T.M., Hardy,P.B., Ghoshal,A., Hossain,M.A., Asressu,K.H., Brown,P.J., Tse,E.G., Stashko,M.A., Li,K., Norris-Drouin,J.L., Herring,L.E., Mordant,A.L., Webb,T.S., Mills,C.A., Barker,N.K., Streblow,Z.J., Perveen,S., Arrowsmith,C.H., Counago,R.M., Arnold,J.J., Cameron,C.E., Streblow,D.N., Moorman,N.J., Heise,M.T., Willson,T.M., Popov,K.I. and Pearce,K.H.<br>Identification of a cell-active chikungunya virus nsP2 protease inhibitor using a covalent fragment-based screening approach<br>Proc Natl Acad Sci U S A (2024) 121, e2409166121-e2409166121. PubMed Europe PubMed DOI I
- Merten,E.M., Sears,J.D., Leisner,T.M., Hardy,P.B., Ghoshal,A., Hossain,M.A., Asressu,K.H., Brown,P.J., Stashko,M.A., Herring,L.E., Mordant,A.L., Webb,T.S., Mills,C.A., Barker,N.K., Arnold,J.J., Cameron,C.E., Streblow,D.N., Moorman,N.J., Heise,M., Willson,T.M., Popov,K.I. and Pearce,K.H.<br>Discovery of a cell-active chikungunya virus nsP2 protease inhibitor using a covalent fragment-based screening approach<br>bioRxiv (2024) PubMed Europe PubMed DOI PMC EPMC I
- Metibemu,D.S., Adeyinka,O.S., Falode,J., Hampton,T., Crown,O., Ojobor,J.C., Narayanan,A., Julander,J. and Ogungbe,I.V.<br>Inhibitor of the non-structural protein 2 protease shows promising efficacy in mouse models of chikungunya<br>Eur J Med Chem (2024) 278, 116808-116808. PubMed Europe PubMed DOI I
- Rabelo,V.W., Sanchez-Nunez,M.L., Correa-Amorim,L.S., Kuhn,R.J., Abreu,P.A. and Paixao,I.C.N.P.<br>In Silico Drug Repurposing Uncovered the Antiviral Potential of the Antiparasitic Drug Oxibendazole Against the Chikungunya Virus<br>ACS Omega (2024) 9, 27632-27642. PubMed Europe PubMed DOI PMC EPMC
- Sharma,K.B., Subramani,C., Ganesh,K., Sharma,A., Basu,B., Balyan,S., Sharma,G., Ka,S., Deb,A., Srivastava,M., Chugh,S., Sehrawat,S., Bharadwaj,K., Rout,A., Sahoo,P.K., Saurav,S., Motiani,R.K., Singh,R., Jain,D., Asthana,S., Wadhwa,R. and Vrati,S.<br>Withaferin A inhibits Chikungunya virus nsP2 protease and shows antiviral activity in the cell culture and mouse model of virus infection<br>PLoS Pathog (2024) 20, e1012816-e1012816. PubMed Europe PubMed DOI PMC EPMC I
- Souza,B.G., Choudhary,S., Vilela,G.G., Passos,G.F.S., Costa,C.A.C.B., Freitas,J.D., Coelho,G.L., Brandao,J.A., Anderson,L., Bassi,E.J., Araujo-Junior,J.X., Tomar,S. and Silva-Junior,E.F.D.<br>Design, synthesis, antiviral evaluation, and In silico studies of acrylamides targeting nsP2 from Chikungunya virus<br>Eur J Med Chem (2023) 258, 115572-115572. PubMed Europe PubMed DOI I
- De,S., Ghosh,S., Keshry,S.S., Mahish,C., Mohapatra,C., Guru,A., Mamidi,P., Datey,A., Pani,S.S., Vasudevan,D., Beuria,T.K., Chattopadhyay,S., Subudhi,B.B. and Chattopadhyay,S.<br>MBZM-N-IBT, a Novel Small Molecule, Restricts Chikungunya Virus Infection by Targeting nsP2 Protease Activity In Vitro, In Vivo, and Ex Vivo<br>Antimicrob Agents Chemother (2022) 66, e0046322-e0046322. PubMed Europe PubMed DOI PMC EPMC
- Laurent,T., Kumar,P., Liese,S., Zare,F., Jonasson,M., Carlson,A. and Carlson,L.A.<br>Architecture of the chikungunya virus replication organelle<br>elife (2022) 11 PubMed Europe PubMed DOI PMC EPMC
- Rabelo,V.W., de Palmer Paixao,I.C.N. and Abreu,P.A.<br>Structural insights into the inhibition of the nsP2 protease from Chikungunya virus by molecular modeling approaches<br>J Mol Model (2022) 28, 311-311. PubMed Europe PubMed DOI
- Ivanova,L., Rausalu,K., Zusinaite,E., Tammiku-Taul,J., Merits,A. and Karelson,M.<br>1,3-Thiazolbenzamide Derivatives as Chikungunya Virus nsP2 Protease Inhibitors<br>ACS Omega (2021) 6, 5786-5794. PubMed Europe PubMed DOI PMC EPMC I
- Ivanova,L., Rausalu,K., Oseka,M., Kananovich,D.G., Zusinaite,E., Tammiku-Taul,J., Lopp,M., Merits,A. and Karelson,M.<br>Novel Analogues of the Chikungunya Virus Protease Inhibitor: Molecular Design, Synthesis, and Biological Evaluation<br>ACS Omega (2021) 6, 10884-10896. PubMed Europe PubMed DOI PMC EPMC
- Fazal,F., Anwar,T., Waheed,Y. and Parvaiz,F.<br>Prediction of promiscuous epitopes in NSP2 of Chikungunya virus: An in-silico approach<br>Trop Biomed (2020) 37, 566-577. PubMed Europe PubMed DOI
- Law,Y.S., Wang,S., Tan,Y.B., Shih,O., Utt,A., Goh,W.Y., Lian,B.J., Chen,M.W., Jeng,U.S., Merits,A. and Luo,D.<br>Inter-domain Flexibility of Chikungunya Virus nsP2 Helicase-Protease Differentially Influences Viral RNA Replication and Infectivity<br>J Virol (2020) PubMed Europe PubMed DOI
- Kumar,P., Kumar,D. and Giri,R.<br>Targeting the nsp2 cysteine protease of Chikungunya virus using FDA approved library and selected cysteine protease inhibitors<br>Pathogens (2019) 8 PubMed Europe PubMed DOI
- Lulla,V., Karo-Astover,L., Rausalu,K., Saul,S., Merits,A. and Lulla,A.<br>Timeliness of proteolytic events is prerequisite for efficient functioning of the alphaviral replicase<br>J Virol (2018) 92, e00151-18-e00151-18. PubMed Europe PubMed DOI
- Narwal,M., Singh,H., Pratap,S., Malik,A., Kuhn,R.J., Kumar,P. and Tomar,S.<br>Crystal structure of chikungunya virus nsP2 cysteine protease reveals a putative flexible loop blocking its active site<br>Int J Biol Macromol (2018) 116, 451-462. PubMed Europe PubMed DOI A S
- Ramphan,S., Khongwichit,S., Saisawang,C., Kovanich,D., Ketterman,A.J., Ubol,S., Auewarakul,P., Roytrakul,S., Smith,D.R. and Kuadkitkan,A.<br>Ubiquitin-conjugating enzyme E2 L3 is downregulated by the Chikungunya virus nsP2 protease<br>Proteomics Clin Appl (2018) 12, e1700020-e1700020. PubMed Europe PubMed DOI
- Saha,A., Acharya,B.N., Priya,R., Tripathi,N.K., Shrivastava,A., Rao,M.K., Kesari,P., Narwal,M., Tomar,S., Bhagyawant,S.S., Parida,M. and Dash,P.K.<br>Development of nsP2 protease based cell free high throughput screening assay for evaluation of inhibitors against emerging Chikungunya virus<br>Sci Rep (2018) 8, 10831-10831. PubMed Europe PubMed DOI PMC EPMC A I
- Singh,H., Mudgal,R., Narwal,M., Kaur,R., Singh,V.A., Malik,A., Chaudhary,M. and Tomar,S.<br>Chikungunya virus inhibition by peptidomimetic inhibitors targeting virus-specific cysteine protease<br>Biochimie (2018) 149, 51-61. PubMed Europe PubMed DOI A
- Dhindwal,S., Kesari,P., Singh,H., Kumar,P. and Tomar,S.<br>Conformer and pharmacophore based identification of peptidomimetic inhibitors of Chikungunya virus nsP2 protease<br>J Biomol Struct Dyn (2017) 35, 3522-3539. PubMed Europe PubMed DOI I
- Ramakrishnan,C., Kutumbarao,N.H.V., Suhitha,S. and Velmurugan,D.<br>Structure-function relationship of Chikungunya nsP2 protease: a comparative study with papain<br>Chem Biol Drug Des (2017) 89, 772-782. PubMed Europe PubMed DOI S
- Saisawang,C., Kuadkitkan,A., Smith,D.R., Ubol,S. and Ketterman,A.J.<br>Glutathionylation of chikungunya nsP2 protein affects protease activity<br>Biochim Biophys Acta (2017) 1861, 106-111. PubMed Europe PubMed DOI
- Byler,K.G., Collins,J.T., Ogungbe,I.V. and Setzer,W.N.<br>Alphavirus protease inhibitors from natural sources: a homology modeling and molecular docking investigation<br>Comput Biol Chem (2016) 64, 163-184. PubMed Europe PubMed DOI I
- Das,P.K., Puusepp,L., Varghese,F.S., Utt,A., Ahola,T., Kananovich,D.G., Lopp,M., Merits,A. and Karelson,M.<br>Design and validation of novel chikungunya virus protease inhibitors<br>Antimicrob Agents Chemother (2016) 60, 7382-7395. PubMed Europe PubMed DOI I
- Rausalu,K., Utt,A., Quirin,T., Varghese,F.S., Zusinaite,E., Das,P.K., Ahola,T. and Merits,A.<br>Chikungunya virus infectivity, RNA replication and non-structural polyprotein processing depend on the nsP2 protease's active site cysteine residue<br>Sci Rep (2016) 6, 37124-37124. PubMed Europe PubMed DOI P
- Agarwal,T., Asthana,S. and Bissoyi,A.<br>Molecular modeling and docking study to elucidate novel Chikungunya virus nsP2 protease inhibitors<br>Indian J Pharm Sci (2015) 77, 453-460. PubMed Europe PubMed PMC EPMC I
- El-Labbad,E.M., Ismail,M.A., Abou Ei Ella,D.A., Ahmed,M., Wang,F., Barakat,K.H. and Abouzid,K.A.<br>Discovery of novel peptidomimetics as irreversible CHIKV nsP2 protease inhibitors using quantum mechanical-based ligand descriptors<br>Chem Biol Drug Des (2015) 86, 1518-1527. PubMed Europe PubMed DOI I
- Jadav,S.S., Sinha,B.N., Hilgenfeld,R., Pastorino,B., de Lamballerie,X. and Jayaprakash,V.<br>Thiazolidone derivatives as inhibitors of chikungunya virus<br>Eur J Med Chem (2015) 89, 172-178. PubMed Europe PubMed DOI I
- Nguyen,P.T., Yu,H. and Keller,P.A.<br>Identification of chikungunya virus nsP2 protease inhibitors using structure-base approaches<br>J Mol Graph Model (2015) 57C, 1-8. PubMed Europe PubMed DOI I
- Saisawang,C., Saitornuang,S., Sillapee,P., Ubol,S., Smith,D.R. and Ketterman,A.J.<br>Chikungunya nsP2 protease is not a papain-like cysteine protease and the catalytic dyad cysteine is interchangeable with a proximal serine<br>Sci Rep (2015) 5, 17125-17125. PubMed Europe PubMed DOI PMC EPMC
- Saisawang,C., Sillapee,P., Sinsirimongkol,K., Ubol,S., Smith,D.R. and Ketterman,A.J.<br>Full length and protease domain activity of chikungunya virus nsP2 differ from other alphavirus nsP2 proteases in recognition of small peptide substrates<br>Biosci Rep (2015) 35 PubMed Europe PubMed DOI PMC EPMC P
- Bassetto,M., De Burghgraeve,T., Delang,L., Massarotti,A., Coluccia,A., Zonta,N., Gatti,V., Colombano,G., Sorba,G., Silvestri,R., Tron,G.C., Neyts,J., Leyssen,P. and Brancale,A.<br>Computer-aided identification, design and synthesis of a novel series of compounds with selective antiviral activity against chikungunya virus<br>Antiviral Res (2013) 98, 12-18. PubMed Europe PubMed DOI I
- Lulla,V., Karo-Astover,L., Rausalu,K., Merits,A. and Lulla,A.<br>Presentation overrides specificity: probing the plasticity of alphaviral proteolytic activity through mutational analysis<br>J Virol (2013) 87, 10207-10220. PubMed Europe PubMed DOI P
- Bora,L.<br>Homology modeling and docking to potential novel inhibitor for Chikungunya (37997) protein nsP2 protease<br>J Proteomics Bioinformatics (2012) 5, 54-59. DOI
- Lulla,A., Lulla,V. and Merits,A.<br>Macromolecular assembly-driven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein<br>J Virol (2012) 86, 553-565. PubMed Europe PubMed DOI
- Shin,G., Yost,S.A., Miller,M.T., Elrod,E.J., Grakoui,A. and Marcotrigiano,J.<br>Structural and functional insights into alphavirus polyprotein processing and pathogenesis<br>Proc Natl Acad Sci U S A (2012) 109, 16534-16539. PubMed Europe PubMed DOI
- Singh,K., Kirubakaran,P., Nagarajan,S., Sakkiah,S., Muthusamy,K., Velmurgan,D. and Jeyakanthan,J.<br>Homology modeling, molecular dynamics, e-pharmacophore mapping and docking study of Chikungunya virus nsP2 protease<br>J Mol Model (2012) 18, 39-51. PubMed Europe PubMed DOI S
- Strauss,E.G. and Strauss,J.H.<br>Sindbis virus nsP2 endopeptidase<br>[ISSN:978-0-12-407743-0] (2012) 3, 2234-2236. DOI
- Zhang,D., Tozser,J. and Waugh,D.S.<br>Molecular cloning, overproduction, purification and biochemical characterization of the p39 nsp2 protease domains encoded by three alphaviruses<br>Protein Expr Purif (2009) 64, 89-97. PubMed Europe PubMed DOI PMC EPMC E
- Pastorino,B.A., Peyrefitte,C.N., Almeras,L., Grandadam,M., Rolland,D., Tolou,H.J. and Bessaud,M.<br>Expression and biochemical characterization of nsP2 cysteine protease of Chikungunya virus<br>Virus Res (2008) 131, 293-298. PubMed Europe PubMed DOI
- [YEAR:20-2-2006]Golubtsov,A., Kaariainen,L. and Caldentey,J.<br>Characterization of the cysteine protease domain of Semliki Forest virus replicase protein nsP2 by in vitro mutagenesis<br>FEBS Lett (20-2-2006) 580, 1502-1508. PubMed Europe PubMed DOI I
- Lulla,A., Lulla,V., Tints,K., Ahola,T. and Merits,A.<br>Molecular determinants of substrate specificity for Semliki Forest virus nonstructural protease<br>J Virol (2006) 80, 5413-5422. PubMed Europe PubMed DOI PMC EPMC P
- Strauss,E.G. and Strauss,J.H.<br>Sindbis virus nsP2 endopeptidase<br>[ISSN:0-12-079610-4] (2004) 2, 1269-1271. V
- [YEAR:24-10-2003]Vasiljeva,L., Merits,A., Golubtsov,A., Sizemskaja,V., Kaariainen,L. and Ahola,T.<br>Regulation of the sequential processing of Semliki Forest virus replicase polyprotein<br>J Biol Chem (24-10-2003) 278, 41636-41645. PubMed Europe PubMed DOI
- Merits,A., Vasiljeva,L., Ahola,T., Kaariainen,L. and Auvinen,P.<br>Proteolytic processing of Semliki Forest virus-specific non-structural polyprotein by nsP2 protease<br>J Gen Virol (2001) 82, 765-773. PubMed Europe PubMed
- [YEAR:17-8-2001]Vasiljeva,L., Valmu,L., Kaariainen,L. and Merits,A.<br>Site-specific protease activity of the carboxyl-terminal domain of Semliki Forest virus replicase protein nsP2<br>J Biol Chem (17-8-2001) 276, 30786-30793. PubMed Europe PubMed DOI
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- Strauss,E.G., de Groot,R.J., Levinson,R. and Strauss,J.H.<br>Identification of the active site residues in the nsP2 proteinase of sindbis virus<br>Virology (1992) 191, 932-940. PubMed Europe PubMed DOI
- Gorbalenya,A.E., Koonin,E.V. and Lai,M.M.C.<br>Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses<br>FEBS Lett (1991) 288, 201-205. PubMed Europe PubMed DOI
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- Hardy,W.R., Hahn,Y.S., de Groot,R.J., Strauss,E.G. and Strauss,J.H.<br>Synthesis and processing of the nonstructural polyproteins of several temperature-sensitive mutants of Sindbis virus<br>Virology (1990) 177, 199-208. PubMed Europe PubMed DOI
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