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Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a57
Q-score: 0.579
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- Hflxr bound to the listeria monocytogenes 50s ribosomal subunit (1 MDa, Complex from Listeria monocytogenes E)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l11 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- Gtpase hflx (47 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a5i
Q-score: 0.638
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]
- Water (18 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- Lincomycin (406 Da, Ligand)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- Lincomycin bound to the listeria monocytogenes 50s ribosomal subunit. (1 MDa, Complex from Listeria monocytogenes E)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8a63
Q-score: 0.503
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- Listeria monocytogenes 50s ribosomal subunit. (1 MDa, Complex from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM volume of HflX bound to the Listeria monocytogenes 50S ribosomal subunit
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]
Cryo-EM map of lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]
Affinity-purified VgaA-LC in complex with 70S ribosomes from Staphylococcus aureus
Crowe-McAuliffe CT, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson K, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 [ DOI: 10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
Image sets:
LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nhk
Q-score: 0.519
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ Pubmed: 34117249 DOI: doi:10.1038/s41467-021-23753-1 ]
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- Trna-fmeti (24 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- Lsaa-in complex with 70s ribosome, mrna, and trna (2 MDa, Complex from Enterococcus faecalis)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- Abc-f type ribosomal protection protein lsa(a) (62 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*ap*up*gp*ap*cp*ap*a)-3') (5 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhl
Q-score: 0.476
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ Pubmed: 34117249 DOI: doi:10.1038/s41467-021-23753-1 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Lincosamide-streptogramin a resistance protein (63 kDa, Protein from Staphylococcus haemolyticus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc in complex with 70s ribosome, mrna, and distorted p-trna from staphylococcus aureus (2 MDa, Complex)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- P-trna fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc (Complex from Staphylococcus haemolyticus)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhm
Q-score: 0.494
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ Pubmed: 34117249 DOI: doi:10.1038/s41467-021-23753-1 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome from staphylococcus aureus (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- Trna-fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*np*np*np*np*np*np*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7nhn
Q-score: 0.534
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ Pubmed: 34117249 DOI: doi:10.1038/s41467-021-23753-1 ]
- Rna (5'-r(p*gp*ap*gp*gp*up*np*np*np*np*np*np*ap*up*g)-3') (3 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- Vgal in complex with 70s ribosome, mrna, and distorted p-trna from listeria monocytogenes (2 MDa, Complex from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s8 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s17 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s13 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s7 (17 kDa, Protein from Listeria monocytogenes EGD-e)
- Trna-fmet (24 kDa, RNA from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s5 (17 kDa, Protein from Listeria monocytogenes EGD-e)
- 5s rrna (36 kDa, RNA from Listeria monocytogenes EGD-E)
- 30s ribosomal protein s11 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s19 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s9 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s16 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s6 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s2 (28 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s3 (24 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s12 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- Lmo0919 protein (64 kDa, Protein from Listeria monocytogenes EGD-e)
- 16s rrna (499 kDa, RNA from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s20 (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s18 (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s rrna (949 kDa, RNA from Listeria monocytogenes EGD-e)
- 30s ribosomal protein s15 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)