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Arp2/3 branch junction complex, ADP state
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uxw
Q-score: 0.585
Chavali SS, Chou SZ, Cao W, Pollard TD, De La Cruz EM, Sindelar CV
Nat Commun (2024) 15 pp. 2059-2059 [ Pubmed: 38448439 DOI: doi:10.1038/s41467-024-46179-x ]
- Actin (Cellular component from Gallus gallus)
- Actin-related protein 2/3 complex subunit 1 (41 kDa, Protein from Schizosaccharomyces pombe)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-related protein 2/3 complex subunit 2 (37 kDa, Protein from Schizosaccharomyces pombe)
- Actin-related protein 2/3 complex subunit 3 (19 kDa, Protein from Schizosaccharomyces pombe)
- Actin, alpha skeletal muscle (42 kDa, Protein from Oryctolagus cuniculus)
- Actin-related protein 2/3 complex subunit 5 (16 kDa, Protein from Schizosaccharomyces pombe)
- Magnesium ion (24 Da, Ligand)
- Arp2/3 complex (Complex from Schizosaccharomyces pombe)
- Arp2/3 branch complex (adp state) (Complex)
- Actin-related protein 2/3 complex subunit 4 (19 kDa, Protein from Schizosaccharomyces pombe)
- Actin-related protein 3 (47 kDa, Protein from Schizosaccharomyces pombe)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Actin-related protein 2 (44 kDa, Protein from Schizosaccharomyces pombe)
Arp2/3 branch junction complex, BeFx state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8uxx
Q-score: 0.519
Chavali SS, Chou SZ, Cao W, Pollard TD, De La Cruz EM, Sindelar CV
Nat Commun (2024) 15 pp. 2059-2059 [ Pubmed: 38448439 DOI: doi:10.1038/s41467-024-46179-x ]
- Actin (Cellular component from Gallus gallus)
- Beryllium trifluoride ion (66 Da, Ligand)
- Actin-related protein 2/3 complex subunit 1 (41 kDa, Protein from Schizosaccharomyces pombe)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Arp2/3 branch complex (adp-befx state) (Complex)
- Actin-related protein 2/3 complex subunit 2 (37 kDa, Protein from Schizosaccharomyces pombe)
- Actin-related protein 2/3 complex subunit 3 (19 kDa, Protein from Schizosaccharomyces pombe)
- Actin-related protein 2/3 complex subunit 5 (16 kDa, Protein from Schizosaccharomyces pombe)
- Actin, alpha skeletal muscle (42 kDa, Protein from Oryctolagus cuniculus)
- Arp2/3 complex (Complex from Schizosaccharomyces pombe)
- Magnesium ion (24 Da, Ligand)
- Actin-related protein 2/3 complex subunit 4 (19 kDa, Protein from Schizosaccharomyces pombe)
- Water (18 Da, Ligand)
- Actin-related protein 3 (47 kDa, Protein from Schizosaccharomyces pombe)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Actin-related protein 2 (44 kDa, Protein from Schizosaccharomyces pombe)
Straight actin filament from Arp2/3 branch junction sample (ADP)
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8uz0
Q-score: 0.575
Chavali SS, Chou SZ, Cao W, Pollard TD, De La Cruz EM, Sindelar CV
Nat Commun (2024) 15 pp. 2059-2059 [ Pubmed: 38448439 DOI: doi:10.1038/s41467-024-46179-x ]
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Actin (Cellular component from Gallus gallus)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Straight actin filament from Arp2/3 branch junction sample (ADP-BeFx)
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8uz1
Q-score: 0.489
Chavali SS, Chou SZ, Cao W, Pollard TD, De La Cruz EM, Sindelar CV
Nat Commun (2024) 15 pp. 2059-2059 [ Pubmed: 38448439 DOI: doi:10.1038/s41467-024-46179-x ]
- Actin (Cellular component from Gallus gallus)
- Beryllium trifluoride ion (66 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Arp2/3 branch complex (adp-befx state) (Complex)
- Magnesium ion (24 Da, Ligand)
- Arp2/3 complex (Complex from Schizosaccharomyces pombe)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7t7c
Q-score: 0.099
Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2121259119 Pubmed: 35135883 ]
Subtomogram average of Munc13-1 C1-C2B-MUN-C2C trimer within 2D crystal between lipid bilayers.
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7t7r
Q-score: 0.122
Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2121259119 Pubmed: 35135883 ]
- Protein unc-13 homolog a (130 kDa, Protein from Mus musculus)
- 2d crystal of munc13-1 c1-c2b-mun-c2c domains between two lipid bilayers. (130 kDa, Complex from Rattus norvegicus)
Composite map of Lateral Munc13-1 C1-C2B-MUN-C2C molecule
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7t7v
Q-score: 0.133
Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2121259119 Pubmed: 35135883 ]
- Protein unc-13 homolog a (130 kDa, Protein from Rattus norvegicus)
- 2d crystal of munc13-1 c1-c2b-mun-c2c domains between two lipid bilayers. (130 kDa, Complex from Rattus norvegicus)
Composite map of Upright Munc13-1 C1-C2B-MUN-C2C molecule spanning two lipid bilayers
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7t7x
Q-score: 0.131
Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2121259119 Pubmed: 35135883 ]
- Protein unc-13 homolog a (130 kDa, Protein from Rattus norvegicus)
- 2d crystal of munc13-1 c1-c2b-mun-c2c domains between two lipid bilayers. (130 kDa, Complex from Rattus norvegicus)
A composite 3D map of Munc13-1 C1-C2B-MUN-C2C 2D crystal between lipid bilayers.
Resolution: 10.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7t81
Q-score: 0.111
Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2121259119 Pubmed: 35135883 ]
- Protein unc-13 homolog a (130 kDa, Protein from Rattus norvegicus)
- 2d crystal of munc13-1 c1-c2b-mun-c2c domains between two lipid bilayers. (130 kDa, Complex from Rattus norvegicus)