Edit your search query here and hit Return to execute it:
structure_determination_method:"singleParticle"

Filter By

Current Database

  • EMDB [45667]

Current status

  • REL [45667]

Sample type

  • Complex [39004]
  • Protein [32967]
  • Ligand [19023]
  • RNA [4360]
  • DNA [3225]
  • Virus [3130]
  • Sample [2964]
  • Cellular component [1772]
  • Cell [318]
  • Other [205]
  • Tissue [49]
  • Em label [2]

Organism

  • Homo sapiens [17113]
  • Synthetic construct [2897]
  • Mus musculus [2840]
  • Escherichia coli [2819]
  • Severe acute respiratory syndrome coronavirus [2389]
  • Saccharomyces cerevisiae [2320]
  • Escherichia coli [1073]
  • Rattus norvegicus [1047]
  • Bos taurus [951]
  • Human immunodeficiency virus 1 [857]
  • Oryctolagus cuniculus [803]
  • Saccharomyces cerevisiae [750]
  • Sus scrofa [708]
  • Xenopus laevis [585]
  • Lama glama [565]
  • Arabidopsis thaliana [496]
  • Macaca mulatta [402]
  • Mycolicibacterium smegmatis [324]
  • Influenza a virus [267]
  • Drosophila melanogaster [260]
  • Bacillus subtilis [254]
  • Mycobacterium tuberculosis [250]
  • Staphylococcus aureus [165]
  • Vicugna pacos [165]
  • Thermus thermophilus [164]
  • Chlamydomonas reinhardtii [160]
  • Pseudomonas aeruginosa [158]
  • Chaetomium thermophilum [153]
  • Danio rerio [151]
  • Escherichia coli [150]
  • Gallus gallus [146]
  • Mycobacterium tuberculosis [143]
  • Tetrahymena thermophila [140]
  • Leishmania tarentolae [136]
  • Saccharomyces cerevisiae [134]
  • Caenorhabditis elegans [133]
  • Enterobacteria phage t4 [128]
  • Bacillus subtilis [123]
  • Ovis aries [121]
  • Chaetomium thermophilum [116]
  • Escherichia virus t7 [113]
  • Bacillus sp. (strain ps3) [113]
  • Salmonella enterica [108]
  • Streptococcus pyogenes [98]
  • Plasmodium falciparum [95]
  • Severe acute respiratory syndrome coronavirus [94]
  • Mycolicibacterium smegmatis [92]
  • Trypanosoma brucei [91]
  • Pseudomonas aeruginosa [88]
  • African swine fever virus [86]
  • Hepatitis b virus [85]
  • Spinacia oleracea [80]
  • Vibrio cholerae [77]
  • Plasmodium falciparum [76]
  • Schizosaccharomyces pombe [76]
  • Escherichia coli [75]
  • Cricetulus griseus [74]
  • Aequorea victoria [71]
  • Thermus thermophilus [70]
  • Human herpesvirus 1 [69]
  • Human cytomegalovirus [69]
  • Monkeypox virus [68]
  • Middle east respiratory syndrome-related coronavirus [68]
  • Human immunodeficiency virus [67]
  • Macaca fascicularis [67]
  • Clostridioides difficile [65]
  • Thermoplasma acidophilum [65]
  • Schizosaccharomyces pombe [65]
  • Synechocystis sp. pcc 6803 [62]
  • Eastern equine encephalitis virus [61]
  • Lassa mammarenavirus [57]
  • Polytomella sp. pringsheim 198.80 [57]
  • Salmonella enterica [57]
  • Enterobacteria phage t4 [56]
  • Adeno-associated virus [56]
  • Enterovirus d [55]
  • Klebsiella pneumoniae [55]
  • Saccharomyces cerevisiae [55]
  • (no species) [54]
  • Dna molecule [54]
  • Neurospora crassa [54]
  • Pseudomonas phage phi6 [53]
  • Escherichia phage lambda [51]
  • Canis lupus [51]
  • Epstein-barr virus (strain gd1) [50]
  • Severe acute respiratory syndrome coronavirus [50]
  • Legionella pneumophila [50]
  • Trypanosoma brucei [50]
  • Clostridium botulinum [48]
  • Human coronavirus hku1 [48]
  • Zika virus [47]
  • Severe acute respiratory syndrome coronavirus [47]
  • Equus caballus [47]
  • Enterovirus a [46]
  • Komagataella phaffii [46]
  • Chikungunya virus [45]
  • Trichomonas vaginalis [45]
  • Sus scrofa [45]
  • Pyrococcus furiosus [44]
  • Thermotoga maritima [44]

EM Method

  • Single-particle [45667]

Resolution

  • < 2Å [314]
  • ≥ 2Å and < 3Å [10246]
  • ≥ 3Å and < 4Å [20805]
  • ≥ 4Å and < 5Å [5001]
  • ≥ 5Å and < 6Å [1153]
  • ≥ 6Å and < 8Å [2314]
  • ≥ 8Å and < 12Å [1736]
  • ≥ 12Å and < 16Å [811]
  • ≥ 16Å and < 20Å [794]
  • ≥ 20Å and < 30Å [1981]
  • ≥ 30Å [453]

Release Date

  • 2026 [907]
  • 2025 [10219]
  • 2024 [8015]
  • 2023 [6505]
  • 2022 [5255]
  • 2021 [3975]
  • 2020 [3360]
  • 2019 [1937]
  • 2018 [1207]
  • 2017 [867]
  • 2016 [815]
  • 2015 [478]
  • 2014 [485]
  • 2013 [428]
  • 2012 [283]
  • 2011 [220]
  • 2010 [174]
  • 2009 [158]
  • 2008 [50]
  • 2007 [115]
  • 2006 [113]
  • 2005 [40]
  • 2004 [30]
  • 2003 [24]
  • 2002 [7]

Author by name

  • Ward AB [1660]
  • Zhang Y [1578]
  • Wang Y [1570]
  • Zhang X [1423]
  • Wang X [1281]
  • Li Y [1089]
  • Liu Y [1072]
  • Wang J [1006]
  • Zhang Z [986]
  • Li X [956]
  • Li Z [902]
  • Li S [861]
  • Li J [852]
  • Zhang J [806]
  • Zhang L [801]
  • Wang L [784]
  • Gao Y [767]
  • Chen Y [733]
  • Wang H [692]
  • Li H [680]
  • Liu S [660]
  • Chen X [624]
  • Zhou ZH [583]
  • Wang C [577]
  • Zhang S [563]
  • Liu J [562]
  • Zhang K [556]
  • Chen Z [554]
  • Liu L [554]
  • Liu Z [553]
  • Wang Q [540]
  • Zhang H [530]
  • Xu Y [527]
  • Beckmann R [525]
  • Liu X [525]
  • Shi Y [525]
  • Liu H [515]
  • Yang Y [512]
  • Jiang Y [510]
  • Cottrell CA [505]
  • Chen J [496]
  • Zhao Y [493]
  • Wang Z [483]
  • Burton DR [477]
  • Zhu Y [472]
  • Yang X [469]
  • Cheng J [468]
  • Han J [468]
  • Huang Y [445]
  • Ozorowski G [445]
  • Wilson IA [435]
  • Liu C [431]
  • Zhang C [427]
  • Wang S [411]
  • Yu X [407]
  • Sewall LM [402]
  • Torres JL [398]
  • Xu C [395]
  • Sanders RW [393]
  • Wang P [390]
  • Li W [389]
  • Cheng Y [378]
  • Wu J [377]
  • Zhou Q [377]
  • Zhao J [375]
  • Zhang R [369]
  • Berninghausen O [368]
  • Zhang Q [368]
  • Wang M [366]
  • Rubinstein JL [365]
  • Yang F [365]
  • Xu J [358]
  • Rao Z [357]
  • Lyumkis D [353]
  • Lu Y [350]
  • Sun Y [349]
  • Brown A [348]
  • Wang W [348]
  • Zhu X [348]
  • Zhang B [346]
  • Wu C [345]
  • Yuan Q [344]
  • Chiu W [343]
  • Li L [338]
  • Chen L [336]
  • Kwong PD [334]
  • Li M [334]
  • Li T [332]
  • Zhang W [331]
  • Zhou J [331]
  • Richey ST [329]
  • Li D [328]
  • Turner HL [328]
  • Zhou Y [327]
  • Xu HE [326]
  • Li N [321]
  • Wu Y [321]
  • Zhou L [320]
  • Zhao X [318]
  • Yang H [317]

Journal

  • NAT COMMUN [8157]
  • TO BE PUBLISHED [4422]
  • NATURE [4119]
  • NAT STRUCT MOL BIOL [2706]
  • PNAS [2543]
  • SCIENCE [2413]
  • CELL [1959]
  • BIORXIV [1755]
  • MOL CELL [1574]
  • SCI ADV [1472]
  • ELIFE [1313]
  • STRUCTURE [1253]
  • CELL REP [1178]
  • NUCLEIC ACIDS RES [957]
  • CELL RES [636]
  • J VIROL [608]
  • EMBO J [579]
  • COMMUN BIOL [537]
  • J MOL BIOL [460]
  • J BIOL CHEM [457]
  • NAT CHEM BIOL [427]
  • PLOS PATHOG [427]
  • CELL DISCOV [418]
  • ACTA CRYSTALLOGR D STRUCT BIOL [330]
  • NAT MICROBIOL [295]
  • J STRUCT BIOL [235]
  • MBIO [222]
  • IMMUNITY [214]
  • NAT PLANTS [211]
  • SCI REP [196]
  • PLOS BIOL [171]
  • EMBO REP [169]
  • CELL HOST MICROBE [162]
  • PROTEIN CELL [154]
  • PROTEIN SCI [151]
  • NAT METHODS [147]
  • J AM CHEM SOC [138]
  • VIRUSES [120]
  • NPJ VACCINES [119]
  • SCI TRANSL MED [119]
  • NEURON [98]
  • IUCRJ [95]
  • PLOS ONE [91]
  • INT J MOL SCI [87]
  • ISCIENCE [79]
  • PNAS NEXUS [77]
  • BIOCHEMISTRY [76]
  • LIFE SCI ALLIANCE [75]
  • J STRUCT BIOL X [73]
  • J MED CHEM [72]
  • SCI IMMUNOL [66]
  • J CELL BIOL [64]
  • ACS NANO [57]
  • SIGNAL TRANSDUCT TARGET THER [57]
  • J CLIN INV [55]
  • RES SQ [52]
  • ADV SCI [51]
  • INT J BIOL MACROMOL [49]
  • RNA [49]
  • VIROLOGY [49]
  • COMMUN CHEM [47]
  • BLOOD [46]
  • FEBS J [46]
  • ANGEW CHEM INT ED ENGL [45]
  • BIOMOLECULES [45]
  • BIOCHEM BIOPHYS RES COMMUN [44]
  • NAT CATAL [43]
  • FRONT MOL BIOSCI [42]
  • MOL PLANT [41]
  • EBIOMEDICINE [38]
  • CELL REP METHODS [36]
  • EMERG MICROBES INFECT [35]
  • GENES DEV [35]
  • CURR BIOL [33]
  • PLANT COMMUN. [33]
  • FEBS LETT [31]
  • DEV CELL [29]
  • FRONT IMMUNOL [29]
  • BIOCHEM J [28]
  • NAT IMMUNOL [28]
  • NATL SCI REV [27]
  • J EXP MED [26]
  • J GEN VIROL [26]
  • PLANT CELL [26]
  • NAT NANOTECHNOL [25]
  • ACS CENT SCI [24]
  • ACS CHEM BIOL [24]
  • ACTA PHARMACOL.SIN. [24]
  • CELL REP MED [23]
  • NAT MATER [23]
  • CELL DEATH DIFFER. [22]
  • HLIFE [22]
  • SCI BULL (BEIJING) [22]
  • BIOCHIM BIOPHYS ACTA BIOENERG [21]
  • J.MOL.CELL.CARDIOL. [21]
  • SMALL [21]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [20]
  • CURR RES STRUCT BIOL [20]
  • NAT CHEM [20]
  • BIOPHYS J [19]

Software

  • CRYOSPARC [12174]
  • RELION [11848]
  • CTFFIND [2070]
  • GCTF [1046]
  • SPIDER [465]
  • CISTEM [450]
  • CHIMERA [393]
  • FREALIGN [376]
  • EMAN [316]
  • COOT [256]
  • EMAN2 [225]
  • WARP [153]
  • PHENIX [151]
  • IMAGIC [143]
  • JSPR [142]
  • XMIPP [136]
  • AUTO3DEM [122]
  • UCSF CHIMERA [93]
  • SPHIRE [85]
  • UCSF CHIMERAX [82]
  • EMAN2, SPARX [61]
  • SPARX [54]
  • CTFFIND3 [53]
  • SITUS [48]
  • MDFF [41]
  • IMAGIC, SPIDER [39]
  • SPIDER, APPION [39]
  • URO [39]
  • APPION, SPIDER [32]
  • EMFIT [32]
  • CTFFIND3, RELION [31]
  • SPIDER, FREALIGN [31]
  • SIMPLE [30]
  • SCIPION [29]
  • EM3DR2 [28]
  • BSOFT [26]
  • EMAN1 [26]
  • MPSA [26]
  • IMIRS [25]
  • ISOLDE [25]
  • CTFFIND4 [24]
  • CHIMERA, SITUS [22]
  • EMAN2, RELION [22]
  • J3DR [22]
  • O [22]
  • JALIGN [20]
  • APPION [19]
  • CTFTILT [19]
  • EMAN1, EMAN2 [18]
  • SPIDER, RELION [18]
  • APPION, SPIDER, SPARX, EMAN2 [17]
  • MRC [17]
  • CHIMERA, COOT [16]
  • IMAGIC, CUSTOM, SPIDER [16]
  • MULTI-PATH SA [16]
  • UNBLUR, CTFFIND4, FREALIGN [16]
  • APPION, SPIDER, EMAN [15]
  • EMAN, SPIDER [15]
  • IMAGIC-5 [15]
  • RELION, CTFFIND3 [15]
  • CHIMERA, MDFF [14]
  • SPIDER, EMAN [14]
  • SPIDER, IMAGIC [14]
  • CRYODRGN [13]
  • IMAGIC-5, SPIDER [13]
  • CHIMERA, FLEX-EM [12]
  • EMAN2, SPIDER, XMIPP [11]
  • GAP [11]
  • JSPR, EMAN2, EMAN [11]
  • SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
  • SPIDER PACKAGE [11]
  • SPIDER XMIPP [11]
  • EMAN, XMIPP [10]
  • EMAN2, RELION, 1.3 [10]
  • FOCUS [10]
  • FREALIX [10]
  • MOTIONCORR2 [10]
  • SPARX/EMAN2 [10]
  • SPIDER, SPARX [10]
  • CRYOLO [9]
  • EMAN, FREALIGN [9]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
  • FLEX-EM [9]
  • MPSA, EMAN, EMAN2 [9]
  • MRC, IMAGIC, SPIDER [9]
  • PFT2, EM3DR2 [9]
  • SPIDER, EMAN2 [9]
  • VEDA [9]
  • XMIPP, SPIDER [9]
  • EMAN, EMAN2, MPSA [8]
  • EMPFT EM3DR [8]
  • IMAGIC, FREALIGN [8]
  • IMAGIC, SPIDER, EMAN [8]
  • IPET [8]
  • JSPR, EMAN, EMAN2 [8]
  • MOLREP, CHIMERA [8]
  • RELION, FREALIGN [8]
  • SPIDER, PACKAGE [8]
  • XMIPP, FREALIGN [8]
  • CHIMERA, PHENIX [7]

Microscope

  • FEI TITAN KRIOS [26283]
  • TFS KRIOS [8590]
  • FEI TALOS ARCTICA [2403]
  • TFS GLACIOS [1387]
  • FEI TECNAI F20 [1294]
  • FEI POLARA 300 [835]
  • FEI TECNAI SPIRIT [749]
  • JEOL CRYO ARM 300 [550]
  • FEI TECNAI F30 [549]
  • FEI TITAN [511]
  • FEI TECNAI ARCTICA [357]
  • FEI TECNAI 12 [240]
  • FEI/PHILIPS CM200FEG [230]
  • FEI TECNAI 20 [213]
  • TFS TALOS [184]
  • JEOL 3200FSC [138]
  • JEOL 2200FS [119]
  • JEOL 2010F [108]
  • JEOL 2100F [88]
  • FEI/PHILIPS CM300FEG/T [85]
  • TFS TALOS L120C [75]
  • JEOL CRYO ARM 200 [65]
  • TFS TALOS F200C [60]
  • JEOL 3200FS [50]
  • FEI/PHILIPS EM420 [47]
  • JEOL 2100 [47]
  • JEOL 1230 [38]
  • TFS TITAN THEMIS [30]
  • FEI/PHILIPS CM120T [26]
  • FEI MORGAGNI [25]
  • FEI/PHILIPS CM200T [24]
  • JEOL 1200EXII [22]
  • JEOL 3000SFF [21]
  • OTHER [20]
  • FEI/PHILIPS CM200FEG/ST [19]
  • TFS TUNDRA [19]
  • JEOL 4000 [17]
  • JEOL 4000EX [17]
  • JEOL 1400 [16]
  • JEOL 1200EX [15]
  • FEI TECNAI 10 [14]
  • FEI/PHILIPS CM300FEG/HE [14]
  • ZEISS LIBRA120PLUS [12]
  • JEOL 1400/HR YPS FEG [11]
  • FEI/PHILIPS CM200FEG/UT [8]
  • JEOL 2010 [8]
  • JEOL 2200FSC [8]
  • JEOL 100CX [7]
  • JEOL 3100FFC [7]
  • FEI TECNAI SPHERA [5]
  • FEI/PHILIPS CM12 [5]
  • JEOL 2000EX [5]
  • JEOL KYOTO-3000SFF [5]
  • FEI/PHILIPS CM10 [4]
  • JEOL 1010 [4]
  • FEI/PHILIPS CM300FEG/ST [3]
  • HITACHI EF2000 [3]
  • HITACHI H-9500SD [3]
  • JEOL 1000EES [3]
  • JEOL 1200 [3]
  • JEOL 2010HT [2]
  • JEOL 2010UHR [2]
  • FEI/PHILIPS CM200FEG/SOPHIE [1]
  • FEI/PHILIPS EM400 [1]
  • JEOL 2000EXII [1]
  • JEOL 2010HC [1]
  • JEOL 2011 [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [43968]
  • LAB6 [1258]
  • OTHER [269]
  • TUNGSTEN HAIRPIN [172]

Film or detector model

  • GATAN K3 6K X 4K [12272]
  • GATAN K3 BIOQUANTUM 6K X 4K [9070]
  • GATAN K2 SUMMIT 4K X 4K [8935]
  • FEI FALCON IV 4K X 4K [3947]
  • FEI FALCON III 4K X 4K [2696]
  • GATAN K2 QUANTUM 4K X 4K [1519]
  • FEI FALCON II 4K X 4K [1249]
  • KODAK SO-163 FILM [928]
  • TFS FALCON 4I 4K X 4K [809]
  • TVIPS TEMCAM-F416 4K X 4K [741]
  • GATAN ULTRASCAN 4000 4K X 4K [595]
  • FEI EAGLE 4K X 4K [472]
  • GATAN K3 BIOCONTINUUM 6K X 4K [352]
  • OTHER [341]
  • FEI CETA 4K X 4K [270]
  • GATAN K2 BASE 4K X 4K [191]
  • GATAN K2 4K X 4K [180]
  • TVIPS TEMCAM-F415 4K X 4K [121]
  • DIRECT ELECTRON DE-20 5K X 3K [114]
  • GENERIC GATAN 4K X 4K [103]
  • GENERIC TVIPS 4K X 4K [71]
  • FEI FALCON I 4K X 4K [68]
  • GENERIC CCD [62]
  • FEI EAGLE 2K X 2K [57]
  • DIRECT ELECTRON DE-64 8K X 8K [48]
  • TVIPS TEMCAM-F816 8K X 8K [41]
  • GATAN K2 IS 4K X 4K [35]
  • GATAN ULTRASCAN 1000 2K X 2K [33]
  • DIRECT ELECTRON APOLLO 4K X 4K [28]
  • DIRECT ELECTRON DE-16 4K X 4K [27]
  • DIRECT ELECTRON DE-12 4K X 3K [24]
  • GENERIC GATAN [24]
  • DIRECT ELECTRON DE-10 5K X 4K [21]
  • KODAK 4489 FILM [13]
  • TVIPS TEMCAM-F224 2K X 2K [12]
  • DECTRIS SINGLA 1K X 1K [11]
  • GATAN MULTISCAN [10]
  • AGFA SCIENTA FILM [9]
  • GENERIC FILM [9]
  • GENERIC TVIPS [8]
  • GATAN ORIUS SC200 2K X 2K [7]
  • TVIPS TEMCAM-F216 2K X 2K [7]
  • GATAN ULTRASCAN 10000 10K X 10K [6]
  • GATAN ALPINE 2.3K X 3.2K [5]
  • GENERIC CCD 2K X 2K [5]
  • DECTRIS ELA 1K X 0.5K [4]
  • GENERIC GATAN 2K X 2K [4]
  • SIA 15C 3K X 3K [4]
  • GENERIC IMAGE PLATES [3]
  • GENERIC TVIPS 2K X 2K [3]
  • GATAN ORIUS SC1000 4K X 2.7K [2]
  • GATAN ORIUS SC600 2.7K X 2.7K [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • PROSCAN TEM-PIV 2K X 2K [1]

External links

  • AlphaFold DB [24749]
  • EMPIAR [3249]
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EMD-46600
Download Map
3D View
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Release date: Feb. 4, 2026
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 9d72

Jiang J, Natarajan K, Margulies DH

To Be Published

EMD-46601
Download Map
3D View
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Release date: Feb. 4, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9d73

Jiang J, Natarajan K, Margulies DH

To Be Published

EMD-47947
Composite map
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3D View
Tubulin Cofactors D,E,G,C and Tubulin complex -- TBCC N Terminus Bound to Tubulin
Release date: Feb. 4, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9edr

Taheri A, Wang Z, Singal B, Guo F, Al-Bassam J

Nat Commun (2025) [ Pubmed: 41461644 DOI: doi:10.1038/s41467-025-68142-0 ]

EMD-47948
Composite map
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3D View
Tubulin cofactors D,E,G,C bound to tubulin dimer -- TBCC N terminus unbound
Release date: Feb. 4, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9eds

Taheri A, Wang Z, Singal B, Guo F, Al-Bassam J

Nat Commun (2025) [ Pubmed: 41461644 DOI: doi:10.1038/s41467-025-68142-0 ]

EMD-47949
Composite map
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3D View
Tubulin cofactors D,E,G bound to tubulin dimer
Release date: Feb. 4, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9edt

Taheri A, Wang Z, Singal B, Guo F, Al-Bassam J

Nat Commun (2025) [ Pubmed: 41461644 DOI: doi:10.1038/s41467-025-68142-0 ]

EMD-47954
Composite map
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3D View
Tubulin cofactors D,E,G bound to tubulin dimer
Release date: Feb. 4, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9eeb

Taheri A, Wang Z, Singal B, Guo F, Al-Bassam J

Nat Commun (2025) [ Pubmed: 41461644 DOI: doi:10.1038/s41467-025-68142-0 ]

EMD-48757
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3D View
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 3
Release date: Feb. 4, 2026
Resolution: 3.83 Å
EM Method: Single-particle
Fitted PDBs: 9mzi

Chang PZ, Nami T

To Be Published

EMD-48758
Download Map
3D View
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 2
Release date: Feb. 4, 2026
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9mzj

Chang PZ, Nami T

To Be Published

EMD-48759
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3D View
CryoEM structure of GluK2 bound to glutamate in the deep desensitized state 1
Release date: Feb. 4, 2026
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 9mzk

Chang PZ, Nami T

To Be Published

EMD-48760
Download Map
3D View
CryoEM structure of GluK2 bound to glutamate in the transition state
Release date: Feb. 4, 2026
Resolution: 4.02 Å
EM Method: Single-particle
Fitted PDBs: 9mzl

Chang PZ, Nami T

To Be Published

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Current Database

  • EMDB [45667]

Current status

  • REL [45667]

Sample type

  • Complex [39004]
  • Protein [32967]
  • Ligand [19023]
  • RNA [4360]
  • DNA [3225]
  • Virus [3130]
  • Sample [2964]
  • Cellular component [1772]
  • Cell [318]
  • Other [205]
  • Tissue [49]
  • Em label [2]

Organism

  • Homo sapiens [17113]
  • Synthetic construct [2897]
  • Mus musculus [2840]
  • Escherichia coli [2819]
  • Severe acute respiratory syndrome coronavirus [2389]
  • Saccharomyces cerevisiae [2320]
  • Escherichia coli [1073]
  • Rattus norvegicus [1047]
  • Bos taurus [951]
  • Human immunodeficiency virus 1 [857]
  • Oryctolagus cuniculus [803]
  • Saccharomyces cerevisiae [750]
  • Sus scrofa [708]
  • Xenopus laevis [585]
  • Lama glama [565]
  • Arabidopsis thaliana [496]
  • Macaca mulatta [402]
  • Mycolicibacterium smegmatis [324]
  • Influenza a virus [267]
  • Drosophila melanogaster [260]
  • Bacillus subtilis [254]
  • Mycobacterium tuberculosis [250]
  • Staphylococcus aureus [165]
  • Vicugna pacos [165]
  • Thermus thermophilus [164]
  • Chlamydomonas reinhardtii [160]
  • Pseudomonas aeruginosa [158]
  • Chaetomium thermophilum [153]
  • Danio rerio [151]
  • Escherichia coli [150]
  • Gallus gallus [146]
  • Mycobacterium tuberculosis [143]
  • Tetrahymena thermophila [140]
  • Leishmania tarentolae [136]
  • Saccharomyces cerevisiae [134]
  • Caenorhabditis elegans [133]
  • Enterobacteria phage t4 [128]
  • Bacillus subtilis [123]
  • Ovis aries [121]
  • Chaetomium thermophilum [116]
  • Escherichia virus t7 [113]
  • Bacillus sp. (strain ps3) [113]
  • Salmonella enterica [108]
  • Streptococcus pyogenes [98]
  • Plasmodium falciparum [95]
  • Severe acute respiratory syndrome coronavirus [94]
  • Mycolicibacterium smegmatis [92]
  • Trypanosoma brucei [91]
  • Pseudomonas aeruginosa [88]
  • African swine fever virus [86]
  • Hepatitis b virus [85]
  • Spinacia oleracea [80]
  • Vibrio cholerae [77]
  • Plasmodium falciparum [76]
  • Schizosaccharomyces pombe [76]
  • Escherichia coli [75]
  • Cricetulus griseus [74]
  • Aequorea victoria [71]
  • Thermus thermophilus [70]
  • Human herpesvirus 1 [69]
  • Human cytomegalovirus [69]
  • Monkeypox virus [68]
  • Middle east respiratory syndrome-related coronavirus [68]
  • Human immunodeficiency virus [67]
  • Macaca fascicularis [67]
  • Clostridioides difficile [65]
  • Thermoplasma acidophilum [65]
  • Schizosaccharomyces pombe [65]
  • Synechocystis sp. pcc 6803 [62]
  • Eastern equine encephalitis virus [61]
  • Lassa mammarenavirus [57]
  • Polytomella sp. pringsheim 198.80 [57]
  • Salmonella enterica [57]
  • Enterobacteria phage t4 [56]
  • Adeno-associated virus [56]
  • Enterovirus d [55]
  • Klebsiella pneumoniae [55]
  • Saccharomyces cerevisiae [55]
  • (no species) [54]
  • Dna molecule [54]
  • Neurospora crassa [54]
  • Pseudomonas phage phi6 [53]
  • Escherichia phage lambda [51]
  • Canis lupus [51]
  • Epstein-barr virus (strain gd1) [50]
  • Severe acute respiratory syndrome coronavirus [50]
  • Legionella pneumophila [50]
  • Trypanosoma brucei [50]
  • Clostridium botulinum [48]
  • Human coronavirus hku1 [48]
  • Zika virus [47]
  • Severe acute respiratory syndrome coronavirus [47]
  • Equus caballus [47]
  • Enterovirus a [46]
  • Komagataella phaffii [46]
  • Chikungunya virus [45]
  • Trichomonas vaginalis [45]
  • Sus scrofa [45]
  • Pyrococcus furiosus [44]
  • Thermotoga maritima [44]

EM Method

  • Single-particle [45667]

Resolution

  • < 2Å [314]
  • ≥ 2Å and < 3Å [10246]
  • ≥ 3Å and < 4Å [20805]
  • ≥ 4Å and < 5Å [5001]
  • ≥ 5Å and < 6Å [1153]
  • ≥ 6Å and < 8Å [2314]
  • ≥ 8Å and < 12Å [1736]
  • ≥ 12Å and < 16Å [811]
  • ≥ 16Å and < 20Å [794]
  • ≥ 20Å and < 30Å [1981]
  • ≥ 30Å [453]

Release Date

  • 2026 [907]
  • 2025 [10219]
  • 2024 [8015]
  • 2023 [6505]
  • 2022 [5255]
  • 2021 [3975]
  • 2020 [3360]
  • 2019 [1937]
  • 2018 [1207]
  • 2017 [867]
  • 2016 [815]
  • 2015 [478]
  • 2014 [485]
  • 2013 [428]
  • 2012 [283]
  • 2011 [220]
  • 2010 [174]
  • 2009 [158]
  • 2008 [50]
  • 2007 [115]
  • 2006 [113]
  • 2005 [40]
  • 2004 [30]
  • 2003 [24]
  • 2002 [7]

Author by name

  • Ward AB [1660]
  • Zhang Y [1578]
  • Wang Y [1570]
  • Zhang X [1423]
  • Wang X [1281]
  • Li Y [1089]
  • Liu Y [1072]
  • Wang J [1006]
  • Zhang Z [986]
  • Li X [956]
  • Li Z [902]
  • Li S [861]
  • Li J [852]
  • Zhang J [806]
  • Zhang L [801]
  • Wang L [784]
  • Gao Y [767]
  • Chen Y [733]
  • Wang H [692]
  • Li H [680]
  • Liu S [660]
  • Chen X [624]
  • Zhou ZH [583]
  • Wang C [577]
  • Zhang S [563]
  • Liu J [562]
  • Zhang K [556]
  • Chen Z [554]
  • Liu L [554]
  • Liu Z [553]
  • Wang Q [540]
  • Zhang H [530]
  • Xu Y [527]
  • Beckmann R [525]
  • Liu X [525]
  • Shi Y [525]
  • Liu H [515]
  • Yang Y [512]
  • Jiang Y [510]
  • Cottrell CA [505]
  • Chen J [496]
  • Zhao Y [493]
  • Wang Z [483]
  • Burton DR [477]
  • Zhu Y [472]
  • Yang X [469]
  • Cheng J [468]
  • Han J [468]
  • Huang Y [445]
  • Ozorowski G [445]
  • Wilson IA [435]
  • Liu C [431]
  • Zhang C [427]
  • Wang S [411]
  • Yu X [407]
  • Sewall LM [402]
  • Torres JL [398]
  • Xu C [395]
  • Sanders RW [393]
  • Wang P [390]
  • Li W [389]
  • Cheng Y [378]
  • Wu J [377]
  • Zhou Q [377]
  • Zhao J [375]
  • Zhang R [369]
  • Berninghausen O [368]
  • Zhang Q [368]
  • Wang M [366]
  • Rubinstein JL [365]
  • Yang F [365]
  • Xu J [358]
  • Rao Z [357]
  • Lyumkis D [353]
  • Lu Y [350]
  • Sun Y [349]
  • Brown A [348]
  • Wang W [348]
  • Zhu X [348]
  • Zhang B [346]
  • Wu C [345]
  • Yuan Q [344]
  • Chiu W [343]
  • Li L [338]
  • Chen L [336]
  • Kwong PD [334]
  • Li M [334]
  • Li T [332]
  • Zhang W [331]
  • Zhou J [331]
  • Richey ST [329]
  • Li D [328]
  • Turner HL [328]
  • Zhou Y [327]
  • Xu HE [326]
  • Li N [321]
  • Wu Y [321]
  • Zhou L [320]
  • Zhao X [318]
  • Yang H [317]

Journal

  • NAT COMMUN [8157]
  • TO BE PUBLISHED [4422]
  • NATURE [4119]
  • NAT STRUCT MOL BIOL [2706]
  • PNAS [2543]
  • SCIENCE [2413]
  • CELL [1959]
  • BIORXIV [1755]
  • MOL CELL [1574]
  • SCI ADV [1472]
  • ELIFE [1313]
  • STRUCTURE [1253]
  • CELL REP [1178]
  • NUCLEIC ACIDS RES [957]
  • CELL RES [636]
  • J VIROL [608]
  • EMBO J [579]
  • COMMUN BIOL [537]
  • J MOL BIOL [460]
  • J BIOL CHEM [457]
  • NAT CHEM BIOL [427]
  • PLOS PATHOG [427]
  • CELL DISCOV [418]
  • ACTA CRYSTALLOGR D STRUCT BIOL [330]
  • NAT MICROBIOL [295]
  • J STRUCT BIOL [235]
  • MBIO [222]
  • IMMUNITY [214]
  • NAT PLANTS [211]
  • SCI REP [196]
  • PLOS BIOL [171]
  • EMBO REP [169]
  • CELL HOST MICROBE [162]
  • PROTEIN CELL [154]
  • PROTEIN SCI [151]
  • NAT METHODS [147]
  • J AM CHEM SOC [138]
  • VIRUSES [120]
  • NPJ VACCINES [119]
  • SCI TRANSL MED [119]
  • NEURON [98]
  • IUCRJ [95]
  • PLOS ONE [91]
  • INT J MOL SCI [87]
  • ISCIENCE [79]
  • PNAS NEXUS [77]
  • BIOCHEMISTRY [76]
  • LIFE SCI ALLIANCE [75]
  • J STRUCT BIOL X [73]
  • J MED CHEM [72]
  • SCI IMMUNOL [66]
  • J CELL BIOL [64]
  • ACS NANO [57]
  • SIGNAL TRANSDUCT TARGET THER [57]
  • J CLIN INV [55]
  • RES SQ [52]
  • ADV SCI [51]
  • INT J BIOL MACROMOL [49]
  • RNA [49]
  • VIROLOGY [49]
  • COMMUN CHEM [47]
  • BLOOD [46]
  • FEBS J [46]
  • ANGEW CHEM INT ED ENGL [45]
  • BIOMOLECULES [45]
  • BIOCHEM BIOPHYS RES COMMUN [44]
  • NAT CATAL [43]
  • FRONT MOL BIOSCI [42]
  • MOL PLANT [41]
  • EBIOMEDICINE [38]
  • CELL REP METHODS [36]
  • EMERG MICROBES INFECT [35]
  • GENES DEV [35]
  • CURR BIOL [33]
  • PLANT COMMUN. [33]
  • FEBS LETT [31]
  • DEV CELL [29]
  • FRONT IMMUNOL [29]
  • BIOCHEM J [28]
  • NAT IMMUNOL [28]
  • NATL SCI REV [27]
  • J EXP MED [26]
  • J GEN VIROL [26]
  • PLANT CELL [26]
  • NAT NANOTECHNOL [25]
  • ACS CENT SCI [24]
  • ACS CHEM BIOL [24]
  • ACTA PHARMACOL.SIN. [24]
  • CELL REP MED [23]
  • NAT MATER [23]
  • CELL DEATH DIFFER. [22]
  • HLIFE [22]
  • SCI BULL (BEIJING) [22]
  • BIOCHIM BIOPHYS ACTA BIOENERG [21]
  • J.MOL.CELL.CARDIOL. [21]
  • SMALL [21]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [20]
  • CURR RES STRUCT BIOL [20]
  • NAT CHEM [20]
  • BIOPHYS J [19]

Software

  • CRYOSPARC [12174]
  • RELION [11848]
  • CTFFIND [2070]
  • GCTF [1046]
  • SPIDER [465]
  • CISTEM [450]
  • CHIMERA [393]
  • FREALIGN [376]
  • EMAN [316]
  • COOT [256]
  • EMAN2 [225]
  • WARP [153]
  • PHENIX [151]
  • IMAGIC [143]
  • JSPR [142]
  • XMIPP [136]
  • AUTO3DEM [122]
  • UCSF CHIMERA [93]
  • SPHIRE [85]
  • UCSF CHIMERAX [82]
  • EMAN2, SPARX [61]
  • SPARX [54]
  • CTFFIND3 [53]
  • SITUS [48]
  • MDFF [41]
  • IMAGIC, SPIDER [39]
  • SPIDER, APPION [39]
  • URO [39]
  • APPION, SPIDER [32]
  • EMFIT [32]
  • CTFFIND3, RELION [31]
  • SPIDER, FREALIGN [31]
  • SIMPLE [30]
  • SCIPION [29]
  • EM3DR2 [28]
  • BSOFT [26]
  • EMAN1 [26]
  • MPSA [26]
  • IMIRS [25]
  • ISOLDE [25]
  • CTFFIND4 [24]
  • CHIMERA, SITUS [22]
  • EMAN2, RELION [22]
  • J3DR [22]
  • O [22]
  • JALIGN [20]
  • APPION [19]
  • CTFTILT [19]
  • EMAN1, EMAN2 [18]
  • SPIDER, RELION [18]
  • APPION, SPIDER, SPARX, EMAN2 [17]
  • MRC [17]
  • CHIMERA, COOT [16]
  • IMAGIC, CUSTOM, SPIDER [16]
  • MULTI-PATH SA [16]
  • UNBLUR, CTFFIND4, FREALIGN [16]
  • APPION, SPIDER, EMAN [15]
  • EMAN, SPIDER [15]
  • IMAGIC-5 [15]
  • RELION, CTFFIND3 [15]
  • CHIMERA, MDFF [14]
  • SPIDER, EMAN [14]
  • SPIDER, IMAGIC [14]
  • CRYODRGN [13]
  • IMAGIC-5, SPIDER [13]
  • CHIMERA, FLEX-EM [12]
  • EMAN2, SPIDER, XMIPP [11]
  • GAP [11]
  • JSPR, EMAN2, EMAN [11]
  • SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
  • SPIDER PACKAGE [11]
  • SPIDER XMIPP [11]
  • EMAN, XMIPP [10]
  • EMAN2, RELION, 1.3 [10]
  • FOCUS [10]
  • FREALIX [10]
  • MOTIONCORR2 [10]
  • SPARX/EMAN2 [10]
  • SPIDER, SPARX [10]
  • CRYOLO [9]
  • EMAN, FREALIGN [9]
  • EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
  • FLEX-EM [9]
  • MPSA, EMAN, EMAN2 [9]
  • MRC, IMAGIC, SPIDER [9]
  • PFT2, EM3DR2 [9]
  • SPIDER, EMAN2 [9]
  • VEDA [9]
  • XMIPP, SPIDER [9]
  • EMAN, EMAN2, MPSA [8]
  • EMPFT EM3DR [8]
  • IMAGIC, FREALIGN [8]
  • IMAGIC, SPIDER, EMAN [8]
  • IPET [8]
  • JSPR, EMAN, EMAN2 [8]
  • MOLREP, CHIMERA [8]
  • RELION, FREALIGN [8]
  • SPIDER, PACKAGE [8]
  • XMIPP, FREALIGN [8]
  • CHIMERA, PHENIX [7]

Microscope

  • FEI TITAN KRIOS [26283]
  • TFS KRIOS [8590]
  • FEI TALOS ARCTICA [2403]
  • TFS GLACIOS [1387]
  • FEI TECNAI F20 [1294]
  • FEI POLARA 300 [835]
  • FEI TECNAI SPIRIT [749]
  • JEOL CRYO ARM 300 [550]
  • FEI TECNAI F30 [549]
  • FEI TITAN [511]
  • FEI TECNAI ARCTICA [357]
  • FEI TECNAI 12 [240]
  • FEI/PHILIPS CM200FEG [230]
  • FEI TECNAI 20 [213]
  • TFS TALOS [184]
  • JEOL 3200FSC [138]
  • JEOL 2200FS [119]
  • JEOL 2010F [108]
  • JEOL 2100F [88]
  • FEI/PHILIPS CM300FEG/T [85]
  • TFS TALOS L120C [75]
  • JEOL CRYO ARM 200 [65]
  • TFS TALOS F200C [60]
  • JEOL 3200FS [50]
  • FEI/PHILIPS EM420 [47]
  • JEOL 2100 [47]
  • JEOL 1230 [38]
  • TFS TITAN THEMIS [30]
  • FEI/PHILIPS CM120T [26]
  • FEI MORGAGNI [25]
  • FEI/PHILIPS CM200T [24]
  • JEOL 1200EXII [22]
  • JEOL 3000SFF [21]
  • OTHER [20]
  • FEI/PHILIPS CM200FEG/ST [19]
  • TFS TUNDRA [19]
  • JEOL 4000 [17]
  • JEOL 4000EX [17]
  • JEOL 1400 [16]
  • JEOL 1200EX [15]
  • FEI TECNAI 10 [14]
  • FEI/PHILIPS CM300FEG/HE [14]
  • ZEISS LIBRA120PLUS [12]
  • JEOL 1400/HR YPS FEG [11]
  • FEI/PHILIPS CM200FEG/UT [8]
  • JEOL 2010 [8]
  • JEOL 2200FSC [8]
  • JEOL 100CX [7]
  • JEOL 3100FFC [7]
  • FEI TECNAI SPHERA [5]
  • FEI/PHILIPS CM12 [5]
  • JEOL 2000EX [5]
  • JEOL KYOTO-3000SFF [5]
  • FEI/PHILIPS CM10 [4]
  • JEOL 1010 [4]
  • FEI/PHILIPS CM300FEG/ST [3]
  • HITACHI EF2000 [3]
  • HITACHI H-9500SD [3]
  • JEOL 1000EES [3]
  • JEOL 1200 [3]
  • JEOL 2010HT [2]
  • JEOL 2010UHR [2]
  • FEI/PHILIPS CM200FEG/SOPHIE [1]
  • FEI/PHILIPS EM400 [1]
  • JEOL 2000EXII [1]
  • JEOL 2010HC [1]
  • JEOL 2011 [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [43968]
  • LAB6 [1258]
  • OTHER [269]
  • TUNGSTEN HAIRPIN [172]

Film or detector model

  • GATAN K3 6K X 4K [12272]
  • GATAN K3 BIOQUANTUM 6K X 4K [9070]
  • GATAN K2 SUMMIT 4K X 4K [8935]
  • FEI FALCON IV 4K X 4K [3947]
  • FEI FALCON III 4K X 4K [2696]
  • GATAN K2 QUANTUM 4K X 4K [1519]
  • FEI FALCON II 4K X 4K [1249]
  • KODAK SO-163 FILM [928]
  • TFS FALCON 4I 4K X 4K [809]
  • TVIPS TEMCAM-F416 4K X 4K [741]
  • GATAN ULTRASCAN 4000 4K X 4K [595]
  • FEI EAGLE 4K X 4K [472]
  • GATAN K3 BIOCONTINUUM 6K X 4K [352]
  • OTHER [341]
  • FEI CETA 4K X 4K [270]
  • GATAN K2 BASE 4K X 4K [191]
  • GATAN K2 4K X 4K [180]
  • TVIPS TEMCAM-F415 4K X 4K [121]
  • DIRECT ELECTRON DE-20 5K X 3K [114]
  • GENERIC GATAN 4K X 4K [103]
  • GENERIC TVIPS 4K X 4K [71]
  • FEI FALCON I 4K X 4K [68]
  • GENERIC CCD [62]
  • FEI EAGLE 2K X 2K [57]
  • DIRECT ELECTRON DE-64 8K X 8K [48]
  • TVIPS TEMCAM-F816 8K X 8K [41]
  • GATAN K2 IS 4K X 4K [35]
  • GATAN ULTRASCAN 1000 2K X 2K [33]
  • DIRECT ELECTRON APOLLO 4K X 4K [28]
  • DIRECT ELECTRON DE-16 4K X 4K [27]
  • DIRECT ELECTRON DE-12 4K X 3K [24]
  • GENERIC GATAN [24]
  • DIRECT ELECTRON DE-10 5K X 4K [21]
  • KODAK 4489 FILM [13]
  • TVIPS TEMCAM-F224 2K X 2K [12]
  • DECTRIS SINGLA 1K X 1K [11]
  • GATAN MULTISCAN [10]
  • AGFA SCIENTA FILM [9]
  • GENERIC FILM [9]
  • GENERIC TVIPS [8]
  • GATAN ORIUS SC200 2K X 2K [7]
  • TVIPS TEMCAM-F216 2K X 2K [7]
  • GATAN ULTRASCAN 10000 10K X 10K [6]
  • GATAN ALPINE 2.3K X 3.2K [5]
  • GENERIC CCD 2K X 2K [5]
  • DECTRIS ELA 1K X 0.5K [4]
  • GENERIC GATAN 2K X 2K [4]
  • SIA 15C 3K X 3K [4]
  • GENERIC IMAGE PLATES [3]
  • GENERIC TVIPS 2K X 2K [3]
  • GATAN ORIUS SC1000 4K X 2.7K [2]
  • GATAN ORIUS SC600 2.7K X 2.7K [2]
  • DECTRIS ARINA 0.2K X 0.2K [1]
  • PROSCAN TEM-PIV 2K X 2K [1]

External links

  • AlphaFold DB [24749]
  • EMPIAR [3249]