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Current Database

  • EMPIAR [6]
  • EMDB [5]

Current status

  • REL [11]

Sample type

  • Ligand [5]
  • Protein [5]
  • Complex [4]
  • Cellular component [1]

Organism

  • Homo sapiens [5]
  • Sus scrofa [3]
  • Gallus gallus [1]
  • Bos taurus [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [1]

Release Date

  • 2025 [3]
  • 2024 [4]
  • 2023 [1]
  • 2021 [1]
  • 2020 [1]
  • 2019 [1]

Author by name

  • Chen J [3]
  • Gruschus JM [3]
  • Liu Y [3]
  • Roll-mecak A [3]
  • Szyk A [3]
  • Tanner ME [3]
  • Tjandra N [3]
  • Zehr EA [3]
  • Andersson SGE [1]
  • Berger C. [1]
  • Bergström Lind S [1]
  • Beumer J [1]
  • Breugem T [1]
  • Chowdhury S [1]
  • Clevers H [1]
  • Cuppen E [1]
  • Danev R [1]
  • Ding B [1]
  • Duimel HQ [1]
  • Dumoux M. [1]
  • Dyrhage K [1]
  • Eisenstein F [1]
  • Elferich JE [1]
  • Eliyan KV [1]
  • Francis J [1]
  • Fukuda Y [1]
  • Glynn SE [1]
  • Grange M. [1]
  • Grigorieff NG [1]
  • Gunn KH [1]
  • Haagmans B [1]
  • Knoops K [1]
  • Koopmans M [1]
  • Kuijpers HJH [1]
  • Lamers MM [1]
  • Lander GC [1]
  • Mahajan M [1]
  • Mitra R [1]
  • Mykytyn AZ [1]
  • Naismith J. H. [1]
  • Narvaez-ortiz HY [1]
  • Neher SB [1]
  • Nolen BJ [1]
  • Odelgard A [1]
  • Pathri AK [1]
  • Peters PJ [1]
  • Puchades C [1]
  • Puschhof J [1]
  • Ravelli RBG [1]
  • Riesebosch S [1]
  • Scadden DS [1]
  • Schipper D [1]
  • Schiroli GS [1]
  • Seeger C [1]
  • Shyam KT [1]
  • Song A [1]
  • Sripada S [1]
  • Watson H. [1]
  • Wheless A [1]
  • Wiseman RL [1]
  • De Graaf M [1]
  • Van Donselaar E [1]
  • Van Schayck Jp [1]
  • Van De Wetering Wj [1]
  • Van Der Vaart J [1]

Author by ORCID

  • Chen J [3]
  • Tanner ME [3]
  • Roll-mecak A [3]
  • Chowdhury S [1]
  • Wiseman RL [1]
  • Nolen BJ [1]
  • Narvaez-ortiz HY [1]
  • Pathri AK [1]
  • Puchades C [1]
  • Francis J [1]
  • Sripada S [1]
  • Shyam KT [1]
  • Eliyan KV [1]

Journal

  • BIORXIV [3]
  • NATURE [3]
  • ELIFE [1]
  • FRONT MICROBIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]
  • NAT STRUCT MOL BIOL [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [3]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]
  • EXCEPTION [2]
  • FIB-SEM [1]

EMPIAR Image category

  • STITCHED MAPS [5]
  • MICROGRAPHS - MULTIFRAME [3]
  • MICROGRAPHS - SINGLE FRAME [3]
  • TILT SERIES [1]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]
  • EMDB [3]
  • EMPIAR [3]
Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
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EMPIAR-12625
Related EMDB
EMD-49737
Cryogenic electron tomography reveals helical organization of lipoprotein lipase in storage vesicles
Release date: Dec. 7, 2025
Dataset size: 10.8 GB
Experiment type: EMDB

Gunn KH, Wheless A, Calcraft T, Kreutzberger M, El-Houshy K, Egelman EH, Rosenthal PB, Neher SB

To Be Published

Image sets:
  • Processed Tomograms of Vesicles containing Lipoprotein Lipase Filaments
EMD-63658
Download Map
3D View
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments Doublet Complex
Composite map
CryoEM
Release date: Sept. 10, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9m64
Q-score: 0.492
Similar entry percentile: 71%

Francis J, Pathri AK, Shyam KT, Sripada S, Mitra R, Narvaez-Ortiz HY, Eliyan KV, Nolen BJ, Chowdhury S

Nat Struct Mol Biol (2025) 32 pp. 2272-2284 [ DOI: doi:10.1038/s41594-025-01673-8 Pubmed: 40954370 ]

EMD-42971
Download Map
3D View
Raw data
EMPIAR-12194
CCP5 in complex with microtubules class1
Composite map
CryoEM
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8v4k
Q-score: 0.501
Similar entry percentile: 60%

Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

Nature (2024) 631 pp. 905-912 [ Pubmed: 39020174 DOI: doi:10.1038/s41586-024-07699-0 ]

EMD-42972
Download Map
3D View
Raw data
EMPIAR-12194
CCP5 in complex with microtubules class2
Composite map
CryoEM
Release date: July 17, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8v4l
Q-score: 0.499
Similar entry percentile: 49%

Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

Nature (2024) 631 pp. 905-912 [ Pubmed: 39020174 DOI: doi:10.1038/s41586-024-07699-0 ]

EMD-42973
Download Map
3D View
Raw data
EMPIAR-12194
CCP5 in complex with microtubules class3
Composite map
CryoEM
Release date: July 17, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8v4m
Q-score: 0.473
Similar entry percentile: 41%

Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

Nature (2024) 631 pp. 905-912 [ Pubmed: 39020174 DOI: doi:10.1038/s41586-024-07699-0 ]

EMPIAR-11841
Related EMDB
EMD-38295
Automatically collected tilt series on cryoFIB milled lamellae of Baker's Yeast
Release date: July 3, 2024
Dataset size: 1.2 TB
Experiment type: EMDB

Eisenstein F, Fukuda Y, Danev R

bioRxiv (2023)

Image sets:
  • Montages of lamellae and grids collected by SPACEtomo
  • Projections of reconstructed tomograms using AreTomo2
  • Unaligned frames for all tilts of all tilt series of Yeast lamellae using SPACEtomo
  • Meta information in form of mdoc files for all tilt series
[Show more]
EMPIAR-11063
Cryo-EM data and 2DTM results of entire sections of differentiated ER-HoxB8 cells
Release date: Feb. 1, 2023
Dataset size: 1.3 TB
Experiment type: Exception

Elferich J, Schiroli G, Scadden DT, Grigorieff N

Elife (2022) 11 [ DOI: 10.7554/elife.80980 Pubmed: 36382886 ]

Image sets:
  • Unaligned multi-frame micrographs of ER-HoxB8 lamella
  • Stitched maps of lamellae imaged using DeCo-LACE - High resolution
  • Aligned micrographs of ER-HoxB8 lamella
  • 2DTM results of micrographs of ER-HoxB8 lamella
  • Stitched maps of lamellae imaged using DeCo-LACE - Overview
[Show more]
EMPIAR-10553
FIB-SEM of Gemmata obscuriglobus - a species of the Planctomycetes phylum
Release date: April 30, 2021
Dataset size: 1.6 GB
Experiment type: FIB-SEM

Seeger C, Dyrhage K, Mahajan M, Odelgard A, Bergström Lind S, Andersson SGE

Front. Microbiol. (2021) 12 [ DOI: 10.3389/fmicb.2021.643045 ]

Image sets:
  • Aligned FIB-SEM micrographs from Gemmata obscuriglobus
EMPIAR-10404
SARS-CoV-2 productively infects human gut enterocytes
Release date: May 1, 2020
Dataset size: 156.2 GB
Experiment type: Exception

Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H

Science () [ DOI: 10.1126/science.abc1669 Pubmed: 32358202 ]

Image sets:
  • 12448_J1HR - Raw micrographs used to stitch 12448_J1HR_Mesh001.ome.tif
  • 12448_J1HR - TEM analysis of SARS-CoV-2 infected intestine organoids
  • 12448_G1HR - TEM analysis of SARS-CoV-2 infected intestine organoids
  • 12448_G1HR - Raw micrographs used to stitch 12448_G1HR_Mesh003.ome.tif
[Show more]
Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMPIAR [6]
  • EMDB [5]

Current status

  • REL [11]

Sample type

  • Ligand [5]
  • Protein [5]
  • Complex [4]
  • Cellular component [1]

Organism

  • Homo sapiens [5]
  • Sus scrofa [3]
  • Gallus gallus [1]
  • Bos taurus [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [1]

Release Date

  • 2025 [3]
  • 2024 [4]
  • 2023 [1]
  • 2021 [1]
  • 2020 [1]
  • 2019 [1]

Author by name

  • Chen J [3]
  • Gruschus JM [3]
  • Liu Y [3]
  • Roll-mecak A [3]
  • Szyk A [3]
  • Tanner ME [3]
  • Tjandra N [3]
  • Zehr EA [3]
  • Andersson SGE [1]
  • Berger C. [1]
  • Bergström Lind S [1]
  • Beumer J [1]
  • Breugem T [1]
  • Chowdhury S [1]
  • Clevers H [1]
  • Cuppen E [1]
  • Danev R [1]
  • Ding B [1]
  • Duimel HQ [1]
  • Dumoux M. [1]
  • Dyrhage K [1]
  • Eisenstein F [1]
  • Elferich JE [1]
  • Eliyan KV [1]
  • Francis J [1]
  • Fukuda Y [1]
  • Glynn SE [1]
  • Grange M. [1]
  • Grigorieff NG [1]
  • Gunn KH [1]
  • Haagmans B [1]
  • Knoops K [1]
  • Koopmans M [1]
  • Kuijpers HJH [1]
  • Lamers MM [1]
  • Lander GC [1]
  • Mahajan M [1]
  • Mitra R [1]
  • Mykytyn AZ [1]
  • Naismith J. H. [1]
  • Narvaez-ortiz HY [1]
  • Neher SB [1]
  • Nolen BJ [1]
  • Odelgard A [1]
  • Pathri AK [1]
  • Peters PJ [1]
  • Puchades C [1]
  • Puschhof J [1]
  • Ravelli RBG [1]
  • Riesebosch S [1]
  • Scadden DS [1]
  • Schipper D [1]
  • Schiroli GS [1]
  • Seeger C [1]
  • Shyam KT [1]
  • Song A [1]
  • Sripada S [1]
  • Watson H. [1]
  • Wheless A [1]
  • Wiseman RL [1]
  • De Graaf M [1]
  • Van Donselaar E [1]
  • Van Schayck Jp [1]
  • Van De Wetering Wj [1]
  • Van Der Vaart J [1]

Author by ORCID

  • Chen J [3]
  • Tanner ME [3]
  • Roll-mecak A [3]
  • Chowdhury S [1]
  • Wiseman RL [1]
  • Nolen BJ [1]
  • Narvaez-ortiz HY [1]
  • Pathri AK [1]
  • Puchades C [1]
  • Francis J [1]
  • Sripada S [1]
  • Shyam KT [1]
  • Eliyan KV [1]

Journal

  • BIORXIV [3]
  • NATURE [3]
  • ELIFE [1]
  • FRONT MICROBIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]
  • NAT STRUCT MOL BIOL [1]
  • SCIENCE [1]

Software

  • CRYOSPARC [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [3]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]
  • EXCEPTION [2]
  • FIB-SEM [1]

EMPIAR Image category

  • STITCHED MAPS [5]
  • MICROGRAPHS - MULTIFRAME [3]
  • MICROGRAPHS - SINGLE FRAME [3]
  • TILT SERIES [1]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]
  • EMDB [3]
  • EMPIAR [3]