Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
sample_name:"RdRp"

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [26]
  • Protein [20]
  • Ligand [18]
  • RNA [17]
  • DNA [1]

Organism

  • Severe acute respiratory syndrome coronavirus [15]
  • Nipah virus [6]
  • Synthetic construct [5]
  • Streptococcus pyogenes [2]
  • Influenza a virus [1]
  • Lassa mammarenavirus [1]
  • Onyong-nyong virus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Chikungunya virus [1]
  • In vitro transcription vector pt7-tp(deltai) [1]

EM Method

  • Single-particle [26]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [10]

Model molecular weight

  • 100-250 kDa [16]
  • 250-500 kDa [1]
  • 500-1000 kDa [3]

Release Date

  • 2025 [11]
  • 2024 [2]
  • 2023 [1]
  • 2022 [3]
  • 2021 [7]
  • 2020 [2]

Author by name

  • Hillen HS [8]
  • Gao M [7]
  • Ditter K [6]
  • Dybkov O [6]
  • Sala F [6]
  • Sala FA [6]
  • Urlaub H [6]
  • Wang Q [6]
  • Jiang H [5]
  • Jiang Y [5]
  • Li Z [5]
  • Luan X [5]
  • Wang X [5]
  • Xiao G [5]
  • Yin W [5]
  • Yu X [5]
  • Zhang L [5]
  • Zhang S [5]
  • Zhou F [5]
  • Zhou Z [5]
  • Aisa H [4]
  • Das K [4]
  • De Wijngaert B [4]
  • Goovaerts Q [4]
  • Gordon CJ [4]
  • Gotte M [4]
  • Lee HW [4]
  • Liu J [4]
  • Oliva MF [4]
  • Shen D [4]
  • Shen J [4]
  • Tian G [4]
  • Wei D [4]
  • Xie Y [4]
  • Xu H [4]
  • Zhang Y [4]
  • Bravo JPK [3]
  • Cramer P [3]
  • Dangerfield TL [3]
  • Dienemann C [3]
  • Johnson KA [3]
  • Kabinger F [3]
  • Li M [3]
  • Liu Y [3]
  • Schmitzova J [3]
  • Taylor DW [3]
  • Zhang J [3]
  • Zhang K [3]
  • An L [2]
  • Chiu S [2]
  • Gong P [2]
  • Hibshman GN [2]
  • Hobartner C [2]
  • Hong Y [2]
  • Hou Y [2]
  • Jia X [2]
  • Jing X [2]
  • Jung K [2]
  • Kokic G [2]
  • Li E [2]
  • Li R [2]
  • Li S [2]
  • Liu MS [2]
  • Liu Q [2]
  • Mccool RS [2]
  • Stiller C [2]
  • Wang W [2]
  • Yao G [2]
  • Zhong Y [2]
  • Zhou M [2]
  • Chang C [1]
  • Chen M [1]
  • Chmielewski D [1]
  • Doze V [1]
  • Eric Xu H [1]
  • Gao Y [1]
  • Gong Q [1]
  • Guo L [1]
  • He Y [1]
  • Jin J [1]
  • Lai Z [1]
  • Lan P [1]
  • Law MCY [1]
  • Li H [1]
  • Liang H [1]
  • Lidschreiber M [1]
  • Liu B [1]
  • Liu M [1]
  • Luo D [1]
  • Rao Z [1]
  • Shi J [1]
  • Shi W [1]
  • Tan YB [1]
  • Wu Y [1]
  • Yang Y [1]
  • You E [1]
  • Zhang X [1]
  • Zhu L [1]

Author by ORCID

  • Hillen HS [8]
  • Urlaub H [6]
  • Das K [4]
  • Cramer P [3]
  • Kabinger F [3]
  • Taylor DW [3]
  • Johnson KA [3]
  • Mccool RS [2]
  • Kokic G [2]
  • Chiu S [2]
  • Stiller C [2]
  • Liu MS [2]
  • Hibshman GN [2]
  • Hobartner C [2]
  • Li S [2]
  • Gong P [2]
  • Wang W [2]
  • Zhang K [2]
  • Wang Q [1]
  • Luo D [1]
  • Yang Y [1]
  • Liang H [1]
  • Jiang Y [1]
  • Shi W [1]
  • Luan X [1]
  • Tan YB [1]
  • Zhang S [1]
  • Liu Y [1]
  • Zhang L [1]
  • Li Z [1]
  • Yu X [1]
  • Chmielewski D [1]
  • Liu B [1]
  • Zhang X [1]
  • Eric Xu H [1]
  • Yin W [1]
  • Law MCY [1]
  • Bravo JPK [1]
  • Jiang H [1]
  • Wang Q [1]
  • Chen M [1]
  • Zhang K [1]
  • He Y [1]
  • Jin J [1]

Journal

  • NAT COMMUN [8]
  • BIORXIV [6]
  • ACTA CRYSTALLOGR D STRUCT BIOL [5]
  • TO BE PUBLISHED [5]
  • NAT STRUCT MOL BIOL [4]
  • NATURE [2]
  • MOL CELL [1]
  • PNAS [1]
  • SCI ADV [1]

Software

  • RELION [10]
  • CRYOSPARC [9]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS GLACIOS [4]
  • TFS KRIOS [2]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [10]
  • GATAN K3 6K X 4K [9]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • PDB [20]
  • PDBe-Kb [20]
  • Pfam [20]
  • UniProt [20]
  • ChEBI [16]
  • ChEMBL [16]
  • DrugBank [16]
  • Gene Ontology [16]
  • InterPro [16]
  • Complex Portal [15]
  • AlphaFold DB [1]
Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-54692
Download Map
3D View
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating remdesivir
Release date: Oct. 1, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9sao
Q-score: 0.524

Gordon CJ, Oliva MF, Lee HW, Goovaerts Q, De Wijngaert B, Gotte M, Das K

bioRxiv (2025) [ DOI: doi:10.1101/2025.09.04.674295 Pubmed: 40950230 ]

EMD-54693
Download Map
3D View
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating Remdesivir
Release date: Oct. 1, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9sap
Q-score: 0.572

Gordon CJ, Oliva MF, Lee HW, Goovaerts Q, De Wijngaert B, Gotte M, Das K

bioRxiv (2025) [ DOI: doi:10.1101/2025.09.04.674295 Pubmed: 40950230 ]

EMD-54694
Download Map
3D View
Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating ATP
Release date: Oct. 1, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9saq
Q-score: 0.592

Gordon CJ, Oliva MF, Lee HW, Goovaerts Q, De Wijngaert B, Gotte M, Das K

bioRxiv (2025) [ DOI: doi:10.1101/2025.09.04.674295 Pubmed: 40950230 ]

EMD-54695
Download Map
3D View
Cryo-EM structure of SARS CoV-2 RdRp wild-type in complex with 20-40mer RNA incorporating ATP
Release date: Oct. 1, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9sar
Q-score: 0.559

Gordon CJ, Oliva MF, Lee HW, Goovaerts Q, De Wijngaert B, Gotte M, Das K

bioRxiv (2025) [ DOI: doi:10.1101/2025.09.04.674295 Pubmed: 40950230 ]

EMD-51402
Download Map
3D View
Structure of Nipah Virus RNA Polymerase Complex - Apo state
Release date: March 5, 2025
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9gjt
Q-score: 0.504

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

EMD-51403
Composite map
Download Map
3D View
Structure of replicating Nipah Virus RNA Polymerase Complex - RNA-bound state
Release date: March 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9gju
Q-score: 0.569

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

EMD-51722
Download Map
3D View
Consensus map - Structure of replicating Nipah Virus RNA Polymerase Complex - RNA-bound state
Release date: March 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

EMD-51723
Download Map
3D View
L - RdRp domain - focused refinement of the Nipah virus RNA polymerase complex in the RNA-bound state.
Release date: March 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

EMD-51724
Download Map
3D View
Phosphoprotein - focused refinement of the Nipah virus RNA polymerase complex in the RNA-bound state.
Release date: March 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

EMD-51725
Download Map
3D View
C-Terminal - focused refinement of the Nipah virus RNA polymerase complex in the RNA-bound state.
Release date: March 5, 2025
Resolution: 2.8 Å
EM Method: Single-particle

Sala FA, Ditter K, Dybkov O, Urlaub H, Hillen HS

Nat Commun (2025) 16 pp. 2261-2261 [ Pubmed: 40050611 DOI: doi:10.1038/s41467-025-57219-5 ]

Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [26]
  • Protein [20]
  • Ligand [18]
  • RNA [17]
  • DNA [1]

Organism

  • Severe acute respiratory syndrome coronavirus [15]
  • Nipah virus [6]
  • Synthetic construct [5]
  • Streptococcus pyogenes [2]
  • Influenza a virus [1]
  • Lassa mammarenavirus [1]
  • Onyong-nyong virus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Chikungunya virus [1]
  • In vitro transcription vector pt7-tp(deltai) [1]

EM Method

  • Single-particle [26]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [10]

Model molecular weight

  • 100-250 kDa [16]
  • 250-500 kDa [1]
  • 500-1000 kDa [3]

Release Date

  • 2025 [11]
  • 2024 [2]
  • 2023 [1]
  • 2022 [3]
  • 2021 [7]
  • 2020 [2]

Author by name

  • Hillen HS [8]
  • Gao M [7]
  • Ditter K [6]
  • Dybkov O [6]
  • Sala F [6]
  • Sala FA [6]
  • Urlaub H [6]
  • Wang Q [6]
  • Jiang H [5]
  • Jiang Y [5]
  • Li Z [5]
  • Luan X [5]
  • Wang X [5]
  • Xiao G [5]
  • Yin W [5]
  • Yu X [5]
  • Zhang L [5]
  • Zhang S [5]
  • Zhou F [5]
  • Zhou Z [5]
  • Aisa H [4]
  • Das K [4]
  • De Wijngaert B [4]
  • Goovaerts Q [4]
  • Gordon CJ [4]
  • Gotte M [4]
  • Lee HW [4]
  • Liu J [4]
  • Oliva MF [4]
  • Shen D [4]
  • Shen J [4]
  • Tian G [4]
  • Wei D [4]
  • Xie Y [4]
  • Xu H [4]
  • Zhang Y [4]
  • Bravo JPK [3]
  • Cramer P [3]
  • Dangerfield TL [3]
  • Dienemann C [3]
  • Johnson KA [3]
  • Kabinger F [3]
  • Li M [3]
  • Liu Y [3]
  • Schmitzova J [3]
  • Taylor DW [3]
  • Zhang J [3]
  • Zhang K [3]
  • An L [2]
  • Chiu S [2]
  • Gong P [2]
  • Hibshman GN [2]
  • Hobartner C [2]
  • Hong Y [2]
  • Hou Y [2]
  • Jia X [2]
  • Jing X [2]
  • Jung K [2]
  • Kokic G [2]
  • Li E [2]
  • Li R [2]
  • Li S [2]
  • Liu MS [2]
  • Liu Q [2]
  • Mccool RS [2]
  • Stiller C [2]
  • Wang W [2]
  • Yao G [2]
  • Zhong Y [2]
  • Zhou M [2]
  • Chang C [1]
  • Chen M [1]
  • Chmielewski D [1]
  • Doze V [1]
  • Eric Xu H [1]
  • Gao Y [1]
  • Gong Q [1]
  • Guo L [1]
  • He Y [1]
  • Jin J [1]
  • Lai Z [1]
  • Lan P [1]
  • Law MCY [1]
  • Li H [1]
  • Liang H [1]
  • Lidschreiber M [1]
  • Liu B [1]
  • Liu M [1]
  • Luo D [1]
  • Rao Z [1]
  • Shi J [1]
  • Shi W [1]
  • Tan YB [1]
  • Wu Y [1]
  • Yang Y [1]
  • You E [1]
  • Zhang X [1]
  • Zhu L [1]

Author by ORCID

  • Hillen HS [8]
  • Urlaub H [6]
  • Das K [4]
  • Cramer P [3]
  • Kabinger F [3]
  • Taylor DW [3]
  • Johnson KA [3]
  • Mccool RS [2]
  • Kokic G [2]
  • Chiu S [2]
  • Stiller C [2]
  • Liu MS [2]
  • Hibshman GN [2]
  • Hobartner C [2]
  • Li S [2]
  • Gong P [2]
  • Wang W [2]
  • Zhang K [2]
  • Wang Q [1]
  • Luo D [1]
  • Yang Y [1]
  • Liang H [1]
  • Jiang Y [1]
  • Shi W [1]
  • Luan X [1]
  • Tan YB [1]
  • Zhang S [1]
  • Liu Y [1]
  • Zhang L [1]
  • Li Z [1]
  • Yu X [1]
  • Chmielewski D [1]
  • Liu B [1]
  • Zhang X [1]
  • Eric Xu H [1]
  • Yin W [1]
  • Law MCY [1]
  • Bravo JPK [1]
  • Jiang H [1]
  • Wang Q [1]
  • Chen M [1]
  • Zhang K [1]
  • He Y [1]
  • Jin J [1]

Journal

  • NAT COMMUN [8]
  • BIORXIV [6]
  • ACTA CRYSTALLOGR D STRUCT BIOL [5]
  • TO BE PUBLISHED [5]
  • NAT STRUCT MOL BIOL [4]
  • NATURE [2]
  • MOL CELL [1]
  • PNAS [1]
  • SCI ADV [1]

Software

  • RELION [10]
  • CRYOSPARC [9]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS GLACIOS [4]
  • TFS KRIOS [2]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [10]
  • GATAN K3 6K X 4K [9]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • PDB [20]
  • PDBe-Kb [20]
  • Pfam [20]
  • UniProt [20]
  • ChEBI [16]
  • ChEMBL [16]
  • DrugBank [16]
  • Gene Ontology [16]
  • InterPro [16]
  • Complex Portal [15]
  • AlphaFold DB [1]