Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [40]
Mus musculus [13]
Rattus norvegicus [13]
Streptococcus pyogenes [12]
Bos taurus [8]
(no species) [7]
Staphylococcus aureus [6]
Enterovirus d [6]
Oryctolagus cuniculus [6]
Streptococcus pyogenes [5]
Escherichia coli [5]
Murine leukemia virus [4]
Mycolicibacterium mucogenicum [4]
Paramecium bursaria chlorella virus 1 [3]
Lachnospiraceae bacterium nd2006 [3]
Acidibacillus sulfuroxidans [3]
Klebsiella variicola [3]
Severe acute respiratory syndrome coronavirus [3]
Mycobacterium phage bxb1 [3]
Synthetic construct [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Bacterium [2]
Deinococcus radiodurans [2]
Bunyamwera orthobunyavirus [2]
Xenopus laevis [2]
Camelus bactrianus [2]
Rattus rattus [1]
Enterobacteria phage t4 [1]
Human immunodeficiency virus 1 [1]
Thermanaerosceptrum fracticalcis [1]
Borrelia burgdorferi [1]
Pyrococcus furiosus [1]
Gervaisevirus gp4 [1]
Dna molecule [1]
Salmonella enterica [1]
Plasmodium falciparum [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Linum usitatissimum [1]
Rotavirus a [1]
Prevotella sp. [1]
Tetronarce californica [1]
Torpedo marmorata [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [53]
Omura SN [34]
Hirano H [31]
Itoh Y [29]
Nakagawa R [26]
Yamashita K [20]
Sano FK [17]
Zhang F [15]
Shuto Y [14]
Hoki M [13]
Zhu S [13]
Liu Y [12]
Shihoya W [12]
Kise Y [11]
Tanaka T [11]
Ishiguro S [10]
Kusakizako T [10]
Ohmori T [10]
Yachie N [10]
Hiramoto T [9]
Mori H [9]
Nishimasu H [9]
Onishi K [9]
Rossmann MG [9]
Akasaka H [8]
Ditommaso T [8]
Garrity AJ [8]
Hisato H [8]
Kobayashi K [8]
Maben Z [8]
Mizuki H [8]
Morinaga H [8]
Munoz G [8]
Ornstein A [8]
Satoshi NO [8]
Yuzuru I [8]
Horinaka K [7]
Kashiwakura Y [7]
Kobayashi TA [7]
Okazaki S [7]
Zhang J [7]
Baggen J [6]
Baradaran R [6]
Cais O [6]
Greger I [6]
Greger IH [6]
Ho H [6]
Ivica J [6]
Jividen K [6]
Kajimoto S [6]
Krieger JM [6]
Lyoo H [6]
Matsuzaki Y [6]
Meijer A [6]
Omura NS [6]
Overduin P [6]
Roberts RW [6]
Stockwell I [6]
Tanaka M [6]
Thibaut HJ [6]
Tsai SQ [6]
Wahedi M [6]
Zhang D [6]
De Bruin Jw [6]
Van Kuppeveld Fjm [6]
Van Vliet Alw [6]
Alfonse LE [5]
Cheng DR [5]
Clarke OB [5]
Condon KJ [5]
Frank J [5]
Grassucci RA [5]
Hendrickson WA [5]
Hoffman GR [5]
Marks AR [5]
Scott DA [5]
Tan EYJ [5]
Wu B [5]
Xu C [5]
Yan WX [5]
Yuan Q [5]
Zalk R [5]
Zhang Y [5]
Des Georges A [5]
Aoki J [4]
Boo ZZ [4]
Chen L [4]
Chong KHC [4]
Enoki S [4]
Goh WI [4]
Gong Q [4]
Hou F [4]
Huynh PT [4]
Izume T [4]
Kawahara R [4]
Kawana H [4]
Lay K [4]
Lim JSY [4]
Ohwada T [4]
Okada Y [4]

Author by ORCID

Nureki O [41]
Omura SN [19]
Itoh Y [17]
Shihoya W [12]
Tanaka T [10]
Yamashita K [10]
Sano FK [10]
Nishimasu H [8]
Zhang F [8]
Shuto Y [8]
Ohmori T [7]
Kusakizako T [7]
Kashiwakura Y [7]
Tsai SQ [6]
Ishiguro S [6]
Hiramoto T [6]
Mori H [6]
Onishi K [6]
Ditommaso T [5]
Alfonse LE [5]
Ohwada T [4]
Chen L [4]
Lay K [4]
Aoki J [4]
Zhong FL [4]
Wu B [4]
Reversade B [4]
Okada Y [4]
Kobayashi TA [4]
Van Der Oost J [3]
Kikkawa M [3]
Inaba K [3]
Dunigan DD [3]
Nogales E [3]
Shao Q [3]
Watanabe S [3]
Klose T [3]
Hibshman GN [3]
Van Etten Jl [3]
Lebbink JHG [3]
Nomura N [3]
Guo M [3]
Liu Y [3]
Noel EA [3]
Iwata S [3]
Fang Q [3]
Wang A [3]
Zhao X [3]
Agarkova IV [3]
Shipman SL [3]
Villegas Warren R [3]
Wang L [3]
Nishizawa T [2]
Konermann S [2]
Kanai Y [2]
Shen C [2]
Hover S [2]
Hellert J [2]
Perry NT [2]
Mankouri J [2]
Hiraizumi M [2]
Krey T [2]
Yang Y [2]
Ohgaki R [2]
Barr JN [2]
Fontana J [2]
Hsu PD [2]
Akasaka H [2]
Liu J [2]
Hansen G [2]
Khusainov I [1]
Ssebyatika GL [1]
Nakajima Y [1]
Kabbani N [1]
Moores CA [1]
Jenni S [1]
Freyberg Z [1]
Herzik Jr Ma [1]
Puig S [1]
Harrison SC [1]
Vasquez-montes V [1]
Yamaguchi Y [1]
Baker D [1]
Joseph PN [1]
Sun L [1]
Schulz TF [1]
Posert R [1]
Deisseroth K [1]
Lopes TJS [1]
Wills ZP [1]
Glausier JR [1]
Lithgow T [1]
Yoshioka C [1]
Bodakuntla S [1]
Stein CS [1]
Stein SC [1]
Tuijtel MW [1]
Lee SY [1]
Lara-tejero M [1]
Mizuno N [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 125. Page 1 of 13

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EMD-66336

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Subtomogram averaging of nucleosome core from reconstituted chromatin

CryoEM

Release date: Sept. 30, 2026
Resolution: 4.1 Å
EM Method: Subtomogram averaging

Zhang H, Li Y, Pan C, Zhu P

To Be Published

EMD-66337

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Subtomogram averaging of nucleosome core from SF9 cell chromatin

CryoEM

Release date: Sept. 30, 2026
Resolution: 5.0 Å
EM Method: Subtomogram averaging

Zhang H, Yan L, Pan C, Zhu P

To Be Published

EMD-67995

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Cryo-EM structure of Free fatty acid receptor 2 FFA2 -ARK1 with GLPG0974

Release date: Sept. 9, 2026
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 21ty

Q-score: 0.49
Similar entry percentile: 45%

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Narita TJ, Kugawa M, Fukuda M, Kato HE

Nat Struct Mol Biol (2026) 33 pp. 1393-1405 [ Pubmed: 42665663 DOI: doi:10.1038/s41594-026-01869-6 ]

EMD-69297

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Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the TS-cleaving state

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 23vu

Q-score: 0.623
Similar entry percentile: 91%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69298

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Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the NTS-cleaving state

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 23vv

Q-score: 0.581
Similar entry percentile: 86%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69299

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Cryo-EM structure of the TfCas12m3-crRNA-tgDNA ternary complex

CryoEM

Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 23vw

Q-score: 0.629
Similar entry percentile: 80%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-76383

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Subtomogram average structure of flagellar export apparatus and MS-ring in Borrelia burgdorferi

CryoEM

Release date: Aug. 26, 2026
Resolution: 16.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 12eq

Q-score: 0.041
Similar entry percentile: 34%

Yue J, Liu J

To Be Published

EMD-76718

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In situ cryo-EM structure of axonal F-actin from ghost neurons

CryoEM

Release date: Aug. 26, 2026
Resolution: 3.24 Å
EM Method: Helical reconstruction
Fitted PDBs: 12rv

Q-score: 0.504
Similar entry percentile: 68%

Bodakuntla S, Marelli J, Vasquez-Montes V, Biertumpfel C, Mizuno N

To Be Published

EMD-65978

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Raw data

Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the pre-strand exchange state

CryoEM

Release date: Aug. 12, 2026
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9whx

Q-score: 0.592
Similar entry percentile: 74%

Hiraizumi M, Athukoralage JS, Perry NT, Tsujimoto E, Shiojiri N, Nagahata N, Lee L, Sun G, Durrant MG, Chandrasekaran SS, Konermann S, Yamashita K, Hsu PD, Nishimasu H

Nature (2026) [ DOI: doi:10.1038/s41586-026-10903-y Pubmed: 42587149 ]

EMD-65979

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Raw data

Cryo-EM structure of the IS621 recombinase in complex with bridge RNA, left-half DNA, and right-half DNA in the post-strand exchange state

CryoEM

Release date: Aug. 12, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9why

Q-score: 0.592
Similar entry percentile: 80%

Hiraizumi M, Athukoralage JS, Perry NT, Tsujimoto E, Shiojiri N, Nagahata N, Lee L, Sun G, Durrant MG, Chandrasekaran SS, Konermann S, Yamashita K, Hsu PD, Nishimasu H

Nature (2026) [ DOI: doi:10.1038/s41586-026-10903-y Pubmed: 42587149 ]

Sort by: Download

Showing 1 - 10 of 125. Page 1 of 13

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [40]
Mus musculus [13]
Rattus norvegicus [13]
Streptococcus pyogenes [12]
Bos taurus [8]
(no species) [7]
Staphylococcus aureus [6]
Enterovirus d [6]
Oryctolagus cuniculus [6]
Streptococcus pyogenes [5]
Escherichia coli [5]
Murine leukemia virus [4]
Mycolicibacterium mucogenicum [4]
Paramecium bursaria chlorella virus 1 [3]
Lachnospiraceae bacterium nd2006 [3]
Acidibacillus sulfuroxidans [3]
Klebsiella variicola [3]
Severe acute respiratory syndrome coronavirus [3]
Mycobacterium phage bxb1 [3]
Synthetic construct [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Bacterium [2]
Deinococcus radiodurans [2]
Bunyamwera orthobunyavirus [2]
Xenopus laevis [2]
Camelus bactrianus [2]
Rattus rattus [1]
Enterobacteria phage t4 [1]
Human immunodeficiency virus 1 [1]
Thermanaerosceptrum fracticalcis [1]
Borrelia burgdorferi [1]
Pyrococcus furiosus [1]
Gervaisevirus gp4 [1]
Dna molecule [1]
Salmonella enterica [1]
Plasmodium falciparum [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Linum usitatissimum [1]
Rotavirus a [1]
Prevotella sp. [1]
Tetronarce californica [1]
Torpedo marmorata [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [53]
Omura SN [34]
Hirano H [31]
Itoh Y [29]
Nakagawa R [26]
Yamashita K [20]
Sano FK [17]
Zhang F [15]
Shuto Y [14]
Hoki M [13]
Zhu S [13]
Liu Y [12]
Shihoya W [12]
Kise Y [11]
Tanaka T [11]
Ishiguro S [10]
Kusakizako T [10]
Ohmori T [10]
Yachie N [10]
Hiramoto T [9]
Mori H [9]
Nishimasu H [9]
Onishi K [9]
Rossmann MG [9]
Akasaka H [8]
Ditommaso T [8]
Garrity AJ [8]
Hisato H [8]
Kobayashi K [8]
Maben Z [8]
Mizuki H [8]
Morinaga H [8]
Munoz G [8]
Ornstein A [8]
Satoshi NO [8]
Yuzuru I [8]
Horinaka K [7]
Kashiwakura Y [7]
Kobayashi TA [7]
Okazaki S [7]
Zhang J [7]
Baggen J [6]
Baradaran R [6]
Cais O [6]
Greger I [6]
Greger IH [6]
Ho H [6]
Ivica J [6]
Jividen K [6]
Kajimoto S [6]
Krieger JM [6]
Lyoo H [6]
Matsuzaki Y [6]
Meijer A [6]
Omura NS [6]
Overduin P [6]
Roberts RW [6]
Stockwell I [6]
Tanaka M [6]
Thibaut HJ [6]
Tsai SQ [6]
Wahedi M [6]
Zhang D [6]
De Bruin Jw [6]
Van Kuppeveld Fjm [6]
Van Vliet Alw [6]
Alfonse LE [5]
Cheng DR [5]
Clarke OB [5]
Condon KJ [5]
Frank J [5]
Grassucci RA [5]
Hendrickson WA [5]
Hoffman GR [5]
Marks AR [5]
Scott DA [5]
Tan EYJ [5]
Wu B [5]
Xu C [5]
Yan WX [5]
Yuan Q [5]
Zalk R [5]
Zhang Y [5]
Des Georges A [5]
Aoki J [4]
Boo ZZ [4]
Chen L [4]
Chong KHC [4]
Enoki S [4]
Goh WI [4]
Gong Q [4]
Hou F [4]
Huynh PT [4]
Izume T [4]
Kawahara R [4]
Kawana H [4]
Lay K [4]
Lim JSY [4]
Ohwada T [4]
Okada Y [4]

Author by ORCID

Nureki O [41]
Omura SN [19]
Itoh Y [17]
Shihoya W [12]
Tanaka T [10]
Yamashita K [10]
Sano FK [10]
Nishimasu H [8]
Zhang F [8]
Shuto Y [8]
Ohmori T [7]
Kusakizako T [7]
Kashiwakura Y [7]
Tsai SQ [6]
Ishiguro S [6]
Hiramoto T [6]
Mori H [6]
Onishi K [6]
Ditommaso T [5]
Alfonse LE [5]
Ohwada T [4]
Chen L [4]
Lay K [4]
Aoki J [4]
Zhong FL [4]
Wu B [4]
Reversade B [4]
Okada Y [4]
Kobayashi TA [4]
Van Der Oost J [3]
Kikkawa M [3]
Inaba K [3]
Dunigan DD [3]
Nogales E [3]
Shao Q [3]
Watanabe S [3]
Klose T [3]
Hibshman GN [3]
Van Etten Jl [3]
Lebbink JHG [3]
Nomura N [3]
Guo M [3]
Liu Y [3]
Noel EA [3]
Iwata S [3]
Fang Q [3]
Wang A [3]
Zhao X [3]
Agarkova IV [3]
Shipman SL [3]
Villegas Warren R [3]
Wang L [3]
Nishizawa T [2]
Konermann S [2]
Kanai Y [2]
Shen C [2]
Hover S [2]
Hellert J [2]
Perry NT [2]
Mankouri J [2]
Hiraizumi M [2]
Krey T [2]
Yang Y [2]
Ohgaki R [2]
Barr JN [2]
Fontana J [2]
Hsu PD [2]
Akasaka H [2]
Liu J [2]
Hansen G [2]
Khusainov I [1]
Ssebyatika GL [1]
Nakajima Y [1]
Kabbani N [1]
Moores CA [1]
Jenni S [1]
Freyberg Z [1]
Herzik Jr Ma [1]
Puig S [1]
Harrison SC [1]
Vasquez-montes V [1]
Yamaguchi Y [1]
Baker D [1]
Joseph PN [1]
Sun L [1]
Schulz TF [1]
Posert R [1]
Deisseroth K [1]
Lopes TJS [1]
Wills ZP [1]
Glausier JR [1]
Lithgow T [1]
Yoshioka C [1]
Bodakuntla S [1]
Stein CS [1]
Stein SC [1]
Tuijtel MW [1]
Lee SY [1]
Lara-tejero M [1]
Mizuno N [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links