Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [40]
Mus musculus [13]
Rattus norvegicus [13]
Streptococcus pyogenes [12]
Bos taurus [10]
(no species) [7]
Staphylococcus aureus [6]
Enterovirus d [6]
Oryctolagus cuniculus [6]
Streptococcus pyogenes [5]
Murine leukemia virus [4]
Mycolicibacterium mucogenicum [4]
Acidibacillus sulfuroxidans [3]
Mycobacterium phage bxb1 [3]
Synthetic construct [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Deinococcus radiodurans [2]
Linum usitatissimum [2]
Escherichia coli [2]
Xenopus laevis [2]
Camelus bactrianus [2]
Rattus rattus [1]
Human immunodeficiency virus 1 [1]
Bacillus subtilis [1]
Pyrococcus furiosus [1]
Gervaisevirus gp4 [1]
Severe acute respiratory syndrome coronavirus [1]
Plasmodium falciparum [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Uncultured bdellovibrionales bacterium [1]
Rotavirus a [1]
Bacillus subtilis [1]
Prevotella sp. [1]
Aquifex aeolicus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [51]
Hirano H [31]
Omura SN [31]
Itoh Y [29]
Nakagawa R [26]
Sano FK [18]
Yamashita K [18]
Zhang F [15]
Shuto Y [14]
Hoki M [13]
Shihoya W [13]
Zhu S [13]
Tanaka T [12]
Kise Y [11]
Ishiguro S [10]
Kusakizako T [10]
Ohmori T [10]
Yachie N [10]
Hiramoto T [9]
Mori H [9]
Akasaka H [8]
Hisato H [8]
Liu Y [8]
Mizuki H [8]
Satoshi NO [8]
Yuzuru I [8]
Horinaka K [7]
Kashiwakura Y [7]
Kobayashi K [7]
Nishimasu H [7]
Okazaki S [7]
Zhang J [7]
Baggen J [6]
Baradaran R [6]
Cais O [6]
Greger I [6]
Greger IH [6]
Ho H [6]
Ivica J [6]
Jividen K [6]
Kajimoto S [6]
Krieger JM [6]
Lyoo H [6]
Matsuzaki Y [6]
Meijer A [6]
Omura NS [6]
Onishi K [6]
Overduin P [6]
Roberts RW [6]
Rossmann MG [6]
Stockwell I [6]
Tan EYJ [6]
Tanaka M [6]
Thibaut HJ [6]
Tsai SQ [6]
Wahedi M [6]
Wu B [6]
Xu C [6]
Zhang D [6]
De Bruin Jw [6]
Van Kuppeveld Fjm [6]
Van Vliet Alw [6]
Alfonse LE [5]
Cheng DR [5]
Clarke OB [5]
Condon KJ [5]
Ditommaso T [5]
Frank J [5]
Garrity AJ [5]
Grassucci RA [5]
Hendrickson WA [5]
Hoffman GR [5]
Maben Z [5]
Marks AR [5]
Morinaga H [5]
Munoz G [5]
Ornstein A [5]
Scott DA [5]
Yan WX [5]
Yuan Q [5]
Zalk R [5]
Zhang Y [5]
Des Georges A [5]
Aoki J [4]
Boo ZZ [4]
Chen L [4]
Chong KHC [4]
Enoki S [4]
Goh WI [4]
Gong Q [4]
Hou F [4]
Huynh PT [4]
Izume T [4]
Kawahara R [4]
Kawana H [4]
Kobayashi TA [4]
Lay K [4]
Lim JSY [4]
Ohwada T [4]
Okada Y [4]

Author by ORCID

Nureki O [48]
Omura SN [31]
Itoh Y [29]
Sano FK [18]
Yamashita K [15]
Zhang F [14]
Shuto Y [14]
Shihoya W [13]
Tanaka T [12]
Ohmori T [10]
Kusakizako T [10]
Akasaka H [8]
Nishimasu H [7]
Kashiwakura Y [7]
Thibaut HJ [6]
Van Kuppeveld Fjm [6]
Lyoo H [6]
Ivica J [6]
Tsai SQ [6]
Baggen J [6]
Ishiguro S [6]
Baradaran R [6]
Greger IH [6]
Liu Y [6]
Ho H [6]
Hiramoto T [6]
Mori H [6]
Onishi K [6]
Ditommaso T [5]
Alfonse LE [5]
Des Georges A [5]
Van Der Oost J [4]
Ohwada T [4]
Goh WI [4]
Wu WY [4]
Chen L [4]
Lay K [4]
Aoki J [4]
Zhong FL [4]
Wu B [4]
Kobayashi K [4]
Reversade B [4]
Okamoto HH [4]
Robinson K [4]
Wright G [4]
Okada Y [4]
Kobayashi TA [4]
Nishizawa T [3]
Kikkawa M [3]
Inaba K [3]
Karvelis T [3]
Watanabe S [3]
Togashi T [3]
Freeman KG [3]
Mondal S [3]
Ho MC [3]
Lebbink JHG [3]
Nomura N [3]
Conway JF [3]
Uosaki H [3]
Iwata S [3]
Tsutsumi A [3]
Villegas Warren R [3]
Hino T [3]
Gibeaux R [2]
Steinmetz MO [2]
Cha M [2]
Kanai Y [2]
Chretien D [2]
Shen C [2]
Song S [2]
Logemann E [2]
Wu M [2]
Kato T [2]
Debs GE [2]
Yang Y [2]
Sindelar CV [2]
Ohgaki R [2]
Bousquet C [2]
Huehn AR [2]
Okuda S [2]
Song W [2]
Jirschitzka J [2]
Cao Y [2]
Quan L [2]
Khusainov I [1]
Venugopal H [1]
Zheng H [1]
Nagata T [1]
Nakajima Y [1]
Kabbani N [1]
Moores CA [1]
Jenni S [1]
Noreng S [1]
Wang J [1]
Jayaraman V [1]
Freyberg Z [1]
Das I [1]
Wang MW [1]
Beja O [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-58124

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In situ subtomogram average of a ribosome bound to ribosome associated vesicle in primary neurons expressing KDEL tagged with mNeonGreen mNeon-KDEL

CryoEM

Release date: June 3, 2026
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Martin-Solana E, Carter SD, Donahue EKF, Ning J, Glausier JR, Preisegger MA, Eisenman L, Joseph PN, Bouchet-Marquis C, Wu K, Mobini CL, Frantz AN, Puig S, Hampton CM, Kabbani N, Jensen GJ, Watkins SC, Deisseroth K, Fenno LE, Gold MS, Wills ZP, Burkewitz K, Das S, Freyberg Z

bioRxiv (2024) [ DOI: doi:10.1101/2024.06.07.598007 Pubmed: 38895376 ]

EMD-64537

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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant, focused on receptor

Release date: May 6, 2026
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 9uvu

Q-score: 0.387
Similar entry percentile: 36%

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-56294

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Plasmodium falciparum gametocyte microtubule with 15 protofilaments determined in situ

CryoEM

Release date: March 18, 2026
Resolution: 25.0 Å
EM Method: Subtomogram averaging

Bangera M, Wu J, Beckett D, Fachet D, Ferreira JL, Voth GA, Reber S, Moores CA

Nat Commun (2026) 17 [ Pubmed: 41786731 DOI: doi:10.1038/s41467-026-70181-0 ]

EMD-63767

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Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex

CryoEM

Release date: March 18, 2026
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9mb6

Q-score: 0.497
Similar entry percentile: 54%

Omura SN, Nakagawa R, Kajimoto S, Okazaki S, Ishiguro S, Mori H, Onishi K, Kashiwakura Y, Hiramoto T, Horinaka K, Tanaka M, Hirano H, Jividen K, Yamashita K, Tsai SQ, Yachie N, Ohmori T, Nishimasu H, Nureki O

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-63768

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Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex

CryoEM

Release date: March 18, 2026
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9mb7

Q-score: 0.526
Similar entry percentile: 60%

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-39941

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state

CryoEM

Release date: Nov. 5, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8zcy

Q-score: 0.342
Similar entry percentile: 8%

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-39942

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an intermediate state

CryoEM

Release date: Nov. 5, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8zcz

Q-score: 0.484
Similar entry percentile: 41%

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-39944

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state

CryoEM

Release date: Nov. 5, 2025
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8zd0

Q-score: 0.572
Similar entry percentile: 78%

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-39954

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state

CryoEM

Release date: Nov. 5, 2025
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8zda

Q-score: 0.478
Similar entry percentile: 50%

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-61327

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Structure of Engineered Coagulation Factor VIII with Enhanced Secretion and Coagulation Potential

CryoEM

Release date: Sept. 10, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9jbv

Q-score: 0.4
Similar entry percentile: 19%

Kashiwakura Y, Nakajima Y, Horinaka K, Lopes TJS, Furuta Y, Yamaguchi Y, Baatartsogt N, Hayakawa M, Katakai Y, Uchiyama S, Nureki O, Nogami K, Ohmori T

Blood (2026) 147 pp. 402-415 [ Pubmed: 41198051 DOI: doi:10.1182/blood.2025028481 ]

Sort by: Download

Showing 1 - 10 of 111. Page 1 of 12

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [40]
Mus musculus [13]
Rattus norvegicus [13]
Streptococcus pyogenes [12]
Bos taurus [10]
(no species) [7]
Staphylococcus aureus [6]
Enterovirus d [6]
Oryctolagus cuniculus [6]
Streptococcus pyogenes [5]
Murine leukemia virus [4]
Mycolicibacterium mucogenicum [4]
Acidibacillus sulfuroxidans [3]
Mycobacterium phage bxb1 [3]
Synthetic construct [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Deinococcus radiodurans [2]
Linum usitatissimum [2]
Escherichia coli [2]
Xenopus laevis [2]
Camelus bactrianus [2]
Rattus rattus [1]
Human immunodeficiency virus 1 [1]
Bacillus subtilis [1]
Pyrococcus furiosus [1]
Gervaisevirus gp4 [1]
Severe acute respiratory syndrome coronavirus [1]
Plasmodium falciparum [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Uncultured bdellovibrionales bacterium [1]
Rotavirus a [1]
Bacillus subtilis [1]
Prevotella sp. [1]
Aquifex aeolicus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [51]
Hirano H [31]
Omura SN [31]
Itoh Y [29]
Nakagawa R [26]
Sano FK [18]
Yamashita K [18]
Zhang F [15]
Shuto Y [14]
Hoki M [13]
Shihoya W [13]
Zhu S [13]
Tanaka T [12]
Kise Y [11]
Ishiguro S [10]
Kusakizako T [10]
Ohmori T [10]
Yachie N [10]
Hiramoto T [9]
Mori H [9]
Akasaka H [8]
Hisato H [8]
Liu Y [8]
Mizuki H [8]
Satoshi NO [8]
Yuzuru I [8]
Horinaka K [7]
Kashiwakura Y [7]
Kobayashi K [7]
Nishimasu H [7]
Okazaki S [7]
Zhang J [7]
Baggen J [6]
Baradaran R [6]
Cais O [6]
Greger I [6]
Greger IH [6]
Ho H [6]
Ivica J [6]
Jividen K [6]
Kajimoto S [6]
Krieger JM [6]
Lyoo H [6]
Matsuzaki Y [6]
Meijer A [6]
Omura NS [6]
Onishi K [6]
Overduin P [6]
Roberts RW [6]
Rossmann MG [6]
Stockwell I [6]
Tan EYJ [6]
Tanaka M [6]
Thibaut HJ [6]
Tsai SQ [6]
Wahedi M [6]
Wu B [6]
Xu C [6]
Zhang D [6]
De Bruin Jw [6]
Van Kuppeveld Fjm [6]
Van Vliet Alw [6]
Alfonse LE [5]
Cheng DR [5]
Clarke OB [5]
Condon KJ [5]
Ditommaso T [5]
Frank J [5]
Garrity AJ [5]
Grassucci RA [5]
Hendrickson WA [5]
Hoffman GR [5]
Maben Z [5]
Marks AR [5]
Morinaga H [5]
Munoz G [5]
Ornstein A [5]
Scott DA [5]
Yan WX [5]
Yuan Q [5]
Zalk R [5]
Zhang Y [5]
Des Georges A [5]
Aoki J [4]
Boo ZZ [4]
Chen L [4]
Chong KHC [4]
Enoki S [4]
Goh WI [4]
Gong Q [4]
Hou F [4]
Huynh PT [4]
Izume T [4]
Kawahara R [4]
Kawana H [4]
Kobayashi TA [4]
Lay K [4]
Lim JSY [4]
Ohwada T [4]
Okada Y [4]

Author by ORCID

Nureki O [48]
Omura SN [31]
Itoh Y [29]
Sano FK [18]
Yamashita K [15]
Zhang F [14]
Shuto Y [14]
Shihoya W [13]
Tanaka T [12]
Ohmori T [10]
Kusakizako T [10]
Akasaka H [8]
Nishimasu H [7]
Kashiwakura Y [7]
Thibaut HJ [6]
Van Kuppeveld Fjm [6]
Lyoo H [6]
Ivica J [6]
Tsai SQ [6]
Baggen J [6]
Ishiguro S [6]
Baradaran R [6]
Greger IH [6]
Liu Y [6]
Ho H [6]
Hiramoto T [6]
Mori H [6]
Onishi K [6]
Ditommaso T [5]
Alfonse LE [5]
Des Georges A [5]
Van Der Oost J [4]
Ohwada T [4]
Goh WI [4]
Wu WY [4]
Chen L [4]
Lay K [4]
Aoki J [4]
Zhong FL [4]
Wu B [4]
Kobayashi K [4]
Reversade B [4]
Okamoto HH [4]
Robinson K [4]
Wright G [4]
Okada Y [4]
Kobayashi TA [4]
Nishizawa T [3]
Kikkawa M [3]
Inaba K [3]
Karvelis T [3]
Watanabe S [3]
Togashi T [3]
Freeman KG [3]
Mondal S [3]
Ho MC [3]
Lebbink JHG [3]
Nomura N [3]
Conway JF [3]
Uosaki H [3]
Iwata S [3]
Tsutsumi A [3]
Villegas Warren R [3]
Hino T [3]
Gibeaux R [2]
Steinmetz MO [2]
Cha M [2]
Kanai Y [2]
Chretien D [2]
Shen C [2]
Song S [2]
Logemann E [2]
Wu M [2]
Kato T [2]
Debs GE [2]
Yang Y [2]
Sindelar CV [2]
Ohgaki R [2]
Bousquet C [2]
Huehn AR [2]
Okuda S [2]
Song W [2]
Jirschitzka J [2]
Cao Y [2]
Quan L [2]
Khusainov I [1]
Venugopal H [1]
Zheng H [1]
Nagata T [1]
Nakajima Y [1]
Kabbani N [1]
Moores CA [1]
Jenni S [1]
Noreng S [1]
Wang J [1]
Jayaraman V [1]
Freyberg Z [1]
Das I [1]
Wang MW [1]
Beja O [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links