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Filter By

Current Database

  • EMDB [113]

Current status

  • REL [113]

Sample type

  • Complex [95]
  • Protein [75]
  • Ligand [46]
  • RNA [17]
  • DNA [16]
  • Virus [14]
  • Cell [2]
  • Cellular component [2]

Organism

  • Homo sapiens [53]
  • Mus musculus [9]
  • (no species) [6]
  • Rattus norvegicus [6]
  • Paramecium bursaria chlorella virus 1 [6]
  • Halothiobacillus neapolitanus [5]
  • Scytonema hofmannii [4]
  • Staphylococcus aureus [3]
  • Severe acute respiratory syndrome coronavirus [3]
  • Synthetic construct [3]
  • Escherichia coli [3]
  • Trypanosoma brucei [3]
  • Trypanosoma brucei [3]
  • Streptococcus pyogenes [2]
  • Camelus bactrianus [2]
  • Human herpesvirus 1 [1]
  • Human mastadenovirus f [1]
  • Enterobacteria phage t4 [1]
  • Indiana vesiculovirus [1]
  • Human immunodeficiency virus 1 [1]
  • Hepatitis delta virus [1]
  • Bacillus subtilis [1]
  • Acidibacillus sulfuroxidans [1]
  • Litunavirus ab09 [1]
  • Pyrococcus furiosus [1]
  • Deinococcus radiodurans [1]
  • Enquatrovirus n4 [1]
  • Streptococcus pyogenes [1]
  • Dictyostelium discoideum [1]
  • Chikungunya virus [1]
  • Bacteriophage sp. [1]
  • Uncultured bdellovibrionales bacterium [1]
  • Linum usitatissimum [1]
  • Rotavirus a [1]
  • Bacillus subtilis [1]
  • Prevotella sp. [1]
  • Tetronarce californica [1]
  • Torpedo marmorata [1]

EM Method

  • Single-particle [86]
  • Subtomogram averaging [20]
  • Helical reconstruction [7]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [31]
  • ≥ 3Å and < 4Å [59]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [5]
  • ≥ 30Å [1]

Model molecular weight

  • 250-500 kDa [1]

Release Date

  • 2026 [2]
  • 2025 [18]
  • 2024 [23]
  • 2023 [41]
  • 2022 [12]
  • 2021 [10]
  • 2020 [5]
  • 2019 [1]
  • 2018 [1]

Author by name

  • Nureki O [23]
  • Beck M [18]
  • Khusainov I [18]
  • Kreysing JP [18]
  • Welsch S [18]
  • Taniguchi R [17]
  • Turonova B [17]
  • Xing H [17]
  • Yamashita K [15]
  • Itoh Y [13]
  • Hirano H [12]
  • Omura SN [12]
  • Sano FK [10]
  • Liu Y [8]
  • Hallberg BM [7]
  • Kusakizako T [7]
  • Nakagawa R [7]
  • Agarkova IV [6]
  • Baradaran R [6]
  • Cais O [6]
  • Cipullo M [6]
  • Dunigan DD [6]
  • Fang Q [6]
  • Gese GV [6]
  • Greger I [6]
  • Greger IH [6]
  • Guo M [6]
  • Ho H [6]
  • Ivica J [6]
  • Khawaja A [6]
  • Klose T [6]
  • Krieger JM [6]
  • Noel EA [6]
  • Rorbach J [6]
  • Rossmann MG [6]
  • Shao Q [6]
  • Stockwell I [6]
  • Valentin Gese G [6]
  • Van Etten Jl [6]
  • Wang A [6]
  • Xie L [6]
  • Zhang D [6]
  • Zhao X [6]
  • Alfonse LE [5]
  • Bui HB [5]
  • Cheng DR [5]
  • Ditommaso T [5]
  • Fujita H [5]
  • Garrity AJ [5]
  • Han BB [5]
  • Hoffman GR [5]
  • Inaba K [5]
  • Inoue M [5]
  • Ishiguro S [5]
  • Iwata S [5]
  • Kato Y [5]
  • Kikkawa M [5]
  • Kinoshita K [5]
  • Li JX [5]
  • Liu K [5]
  • Liu LN [5]
  • Maben Z [5]
  • Morinaga H [5]
  • Munoz G [5]
  • Nomura N [5]
  • Ornstein A [5]
  • Scott DA [5]
  • Shihoya W [5]
  • Tanaka T [5]
  • Tsutsumi A [5]
  • Uemura T [5]
  • Wang P [5]
  • Wang SM [5]
  • Watanabe S [5]
  • Yachie N [5]
  • Yan WX [5]
  • Zhang J [5]
  • Zhang YZ [5]
  • Basle A [4]
  • Chriscoli V [4]
  • Enoki S [4]
  • Fuglsang A [4]
  • Hiramoto T [4]
  • Kise Y [4]
  • Kobayashi K [4]
  • Kobayashi TA [4]
  • Li J [4]
  • Li K [4]
  • Li T [4]
  • Li TP [4]
  • Marles-wright J [4]
  • Mesa P [4]
  • Montoya G [4]
  • Mori H [4]
  • Ng PC [4]
  • Nishimasu H [4]
  • Ohmori T [4]
  • Okada Y [4]
  • Okazaki S [4]
  • Pape T [4]

Journal

  • NAT COMMUN [34]
  • SCIENCE [17]
  • NATURE [13]
  • TO BE PUBLISHED [8]
  • COMMUN BIOL [5]
  • ELIFE [5]
  • PNAS [5]
  • SCI ADV [5]
  • MOL CELL [4]
  • NAT STRUCT MOL BIOL [3]
  • STRUCTURE [3]
  • BIORXIV [2]
  • CELL [2]
  • EXPLORATION (BEIJING) [2]
  • MBIO [2]
  • NAT CHEM BIOL [1]
  • NAT METHODS [1]
  • NAT MICROBIOL [1]
  • NUCLEIC ACIDS RES [1]
  • RES SQ [1]

Software

  • RELION [25]
  • CRYOSPARC [22]
  • JSPR [6]
  • GCTF [3]
  • CTFFIND [1]
  • EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [75]
  • TFS KRIOS [30]
  • JEOL CRYO ARM 300 [5]
  • TFS GLACIOS [2]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [111]
  • OTHER [2]

Film or detector model

  • GATAN K3 6K X 4K [42]
  • GATAN K3 BIOQUANTUM 6K X 4K [28]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K2 SUMMIT 4K X 4K [15]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • TFS FALCON 4I 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]
Sort by: Download
Showing 1 - 10 of 113. Page 1 of 12
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EMD-71803
Download Map
3D View
HDV particle subtomogram reconstruction
CryoEM
Release date: Jan. 28, 2026
Resolution: 36.0 Å
EM Method: Subtomogram averaging

Itskanov S, Ary B, Mehra U, Lew I, Novikov N, Schmitz U, Holdorf MM, Beran RK, Lansdon EB

PNAS (2026) 123 [ DOI: doi:10.1073/pnas.2519809123 ]

EMD-74075
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3D View
Pseudomonas phage DEV delta-gp53 mutant neck and tail portal, head-to-tail and tail tube proteins
CryoEM
Release date: Jan. 21, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9zdw

Nieto Noblecia J, Bellis NF, Antichi CA, Aminian S, Forti F, Falchi FA, Sposato D, Imperi F, Cingolani G, Briani F

Mbio (2026) 17 pp. e0356125-e0356125 [ DOI: doi:10.1128/mbio.03561-25 Pubmed: 41568963 ]

EMD-72877
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3D View
N4 Empty Particle C6 Tail
CryoEM
Release date: Dec. 24, 2025
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9yf5

Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G

Res Sq (2025) [ Pubmed: 41282253 DOI: doi:10.21203/rs.3.rs-7746245/v1 ]

EMD-62529
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3D View
Cryo-EM map of carboxysomal midi-shell: T 16 shell under C1 symmetry
CryoEM
Release date: Dec. 3, 2025
Resolution: 3.71 Å
EM Method: Single-particle

Li JX, Li TP, Wang SM, Zhang YZ, Liu LN, Wang P

To Be Published

EMD-39942
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3D View
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
CryoEM
Release date: Nov. 5, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8zcz
Q-score: 0.484

Omura SN, Nakagawa R, Kajimoto S, Okazaki S, Ishiguro S, Mori H, Kashiwakura Y, Hiramoto T, Hirano H, Yamashita K, Jividen K, Tsai SQ, Yachie N, Ohmori T, Nishimasu H, Nureki O

To Be Published

EMD-39944
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3D View
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
CryoEM
Release date: Nov. 5, 2025
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8zd0
Q-score: 0.572

Omura SN, Nakagawa R, Kajimoto S, Okazaki S, Ishiguro S, Mori H, Kashiwakura Y, Hiramoto T, Hirano H, Yamashita K, Jividen K, Tsai SQ, Yachie N, Ohmori T, Nishimasu H, Nureki O

To Be Published

EMD-39954
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3D View
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8zda
Q-score: 0.478

Omura SN, Nakagawa R, Kajimoto S, Okazaki S, Ishiguro S, Mori H, Kashiwakura Y, Hiramoto T, Hirano H, Yamashita K, Jividen K, Tsai SQ, Yachie N, Ohmori T, Nishimasu H, Nureki O

To Be Published

EMD-44423
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3D View
Cryo-EM structure of Chikungunya virus asymmetric unit with Fab C9
CryoEM
Release date: Oct. 8, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bbn
Q-score: 0.378

Su GC, Galaz-Montoya JG, Pintilie G, Jin J, Chiu W

To Be Published

EMD-51901
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3D View
SARS-CoV-2 S protein in complex with pT1679 Fab
CryoEM
Release date: July 23, 2025
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 9h6u
Q-score: 0.505

Stein SC, Ssebyatika G, Benecke T, Stroh L, Rajak MK, Vollmer B, Menz S, Waldmann J-Y, Tipp SN, Ochulor O, Herold E, Schwarzloh B, Mutschall D, Zischke J, Schneider T, Hinrichs I, Blasczyk R, Kleine-Weber H, Hoffmann M, Klein F, Kaiser FK, Gonzalez-Hernandez M, Armando F, Ciurkiewicz M, Beythien G, Pohlmann S, Baumgartner W, Gruenewald K, Osterhaus A, Schulz TF, Krey T, Hansen G

Mbio (2025) 16 pp. e0060625-e0060625 [ Pubmed: 40742150 DOI: doi:10.1128/mbio.00606-25 ]

EMD-61037
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3D View
Cryo-EM structure of CasLambda2-crRNA binary complex
CryoEM
Release date: June 11, 2025
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9izm
Q-score: 0.479

Omura SN, Alfonse LE, Ornstein A, Morinaga H, Hirano H, Itoh Y, Munoz G, Garrity AJ, Hoffman GR, DiTommaso T, Yan WX, Cheng DR, Scott DA, Maben Z, Nureki O

Commun Biol (2025) 8 pp. 876-876 [ DOI: doi:10.1038/s42003-025-08300-8 Pubmed: 40473912 ]

Sort by: Download
Showing 1 - 10 of 113. Page 1 of 12
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [113]

Current status

  • REL [113]

Sample type

  • Complex [95]
  • Protein [75]
  • Ligand [46]
  • RNA [17]
  • DNA [16]
  • Virus [14]
  • Cell [2]
  • Cellular component [2]

Organism

  • Homo sapiens [53]
  • Mus musculus [9]
  • (no species) [6]
  • Rattus norvegicus [6]
  • Paramecium bursaria chlorella virus 1 [6]
  • Halothiobacillus neapolitanus [5]
  • Scytonema hofmannii [4]
  • Staphylococcus aureus [3]
  • Severe acute respiratory syndrome coronavirus [3]
  • Synthetic construct [3]
  • Escherichia coli [3]
  • Trypanosoma brucei [3]
  • Trypanosoma brucei [3]
  • Streptococcus pyogenes [2]
  • Camelus bactrianus [2]
  • Human herpesvirus 1 [1]
  • Human mastadenovirus f [1]
  • Enterobacteria phage t4 [1]
  • Indiana vesiculovirus [1]
  • Human immunodeficiency virus 1 [1]
  • Hepatitis delta virus [1]
  • Bacillus subtilis [1]
  • Acidibacillus sulfuroxidans [1]
  • Litunavirus ab09 [1]
  • Pyrococcus furiosus [1]
  • Deinococcus radiodurans [1]
  • Enquatrovirus n4 [1]
  • Streptococcus pyogenes [1]
  • Dictyostelium discoideum [1]
  • Chikungunya virus [1]
  • Bacteriophage sp. [1]
  • Uncultured bdellovibrionales bacterium [1]
  • Linum usitatissimum [1]
  • Rotavirus a [1]
  • Bacillus subtilis [1]
  • Prevotella sp. [1]
  • Tetronarce californica [1]
  • Torpedo marmorata [1]

EM Method

  • Single-particle [86]
  • Subtomogram averaging [20]
  • Helical reconstruction [7]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [31]
  • ≥ 3Å and < 4Å [59]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [5]
  • ≥ 30Å [1]

Model molecular weight

  • 250-500 kDa [1]

Release Date

  • 2026 [2]
  • 2025 [18]
  • 2024 [23]
  • 2023 [41]
  • 2022 [12]
  • 2021 [10]
  • 2020 [5]
  • 2019 [1]
  • 2018 [1]

Author by name

  • Nureki O [23]
  • Beck M [18]
  • Khusainov I [18]
  • Kreysing JP [18]
  • Welsch S [18]
  • Taniguchi R [17]
  • Turonova B [17]
  • Xing H [17]
  • Yamashita K [15]
  • Itoh Y [13]
  • Hirano H [12]
  • Omura SN [12]
  • Sano FK [10]
  • Liu Y [8]
  • Hallberg BM [7]
  • Kusakizako T [7]
  • Nakagawa R [7]
  • Agarkova IV [6]
  • Baradaran R [6]
  • Cais O [6]
  • Cipullo M [6]
  • Dunigan DD [6]
  • Fang Q [6]
  • Gese GV [6]
  • Greger I [6]
  • Greger IH [6]
  • Guo M [6]
  • Ho H [6]
  • Ivica J [6]
  • Khawaja A [6]
  • Klose T [6]
  • Krieger JM [6]
  • Noel EA [6]
  • Rorbach J [6]
  • Rossmann MG [6]
  • Shao Q [6]
  • Stockwell I [6]
  • Valentin Gese G [6]
  • Van Etten Jl [6]
  • Wang A [6]
  • Xie L [6]
  • Zhang D [6]
  • Zhao X [6]
  • Alfonse LE [5]
  • Bui HB [5]
  • Cheng DR [5]
  • Ditommaso T [5]
  • Fujita H [5]
  • Garrity AJ [5]
  • Han BB [5]
  • Hoffman GR [5]
  • Inaba K [5]
  • Inoue M [5]
  • Ishiguro S [5]
  • Iwata S [5]
  • Kato Y [5]
  • Kikkawa M [5]
  • Kinoshita K [5]
  • Li JX [5]
  • Liu K [5]
  • Liu LN [5]
  • Maben Z [5]
  • Morinaga H [5]
  • Munoz G [5]
  • Nomura N [5]
  • Ornstein A [5]
  • Scott DA [5]
  • Shihoya W [5]
  • Tanaka T [5]
  • Tsutsumi A [5]
  • Uemura T [5]
  • Wang P [5]
  • Wang SM [5]
  • Watanabe S [5]
  • Yachie N [5]
  • Yan WX [5]
  • Zhang J [5]
  • Zhang YZ [5]
  • Basle A [4]
  • Chriscoli V [4]
  • Enoki S [4]
  • Fuglsang A [4]
  • Hiramoto T [4]
  • Kise Y [4]
  • Kobayashi K [4]
  • Kobayashi TA [4]
  • Li J [4]
  • Li K [4]
  • Li T [4]
  • Li TP [4]
  • Marles-wright J [4]
  • Mesa P [4]
  • Montoya G [4]
  • Mori H [4]
  • Ng PC [4]
  • Nishimasu H [4]
  • Ohmori T [4]
  • Okada Y [4]
  • Okazaki S [4]
  • Pape T [4]

Journal

  • NAT COMMUN [34]
  • SCIENCE [17]
  • NATURE [13]
  • TO BE PUBLISHED [8]
  • COMMUN BIOL [5]
  • ELIFE [5]
  • PNAS [5]
  • SCI ADV [5]
  • MOL CELL [4]
  • NAT STRUCT MOL BIOL [3]
  • STRUCTURE [3]
  • BIORXIV [2]
  • CELL [2]
  • EXPLORATION (BEIJING) [2]
  • MBIO [2]
  • NAT CHEM BIOL [1]
  • NAT METHODS [1]
  • NAT MICROBIOL [1]
  • NUCLEIC ACIDS RES [1]
  • RES SQ [1]

Software

  • RELION [25]
  • CRYOSPARC [22]
  • JSPR [6]
  • GCTF [3]
  • CTFFIND [1]
  • EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [75]
  • TFS KRIOS [30]
  • JEOL CRYO ARM 300 [5]
  • TFS GLACIOS [2]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [111]
  • OTHER [2]

Film or detector model

  • GATAN K3 6K X 4K [42]
  • GATAN K3 BIOQUANTUM 6K X 4K [28]
  • FEI FALCON IV 4K X 4K [23]
  • GATAN K2 SUMMIT 4K X 4K [15]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • TFS FALCON 4I 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

External links

  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDB [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]