Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [53]
Mus musculus [9]
(no species) [6]
Rattus norvegicus [6]
Paramecium bursaria chlorella virus 1 [6]
Staphylococcus aureus [5]
Halothiobacillus neapolitanus [5]
Scytonema hofmannii [4]
Severe acute respiratory syndrome coronavirus [3]
Enquatrovirus n4 [3]
Synthetic construct [3]
Escherichia coli [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Streptococcus pyogenes [2]
Camelus bactrianus [2]
Human herpesvirus 1 [1]
Human mastadenovirus f [1]
Enterobacteria phage t4 [1]
Indiana vesiculovirus [1]
Human immunodeficiency virus 1 [1]
Hepatitis delta virus [1]
Bacillus subtilis [1]
Acidibacillus sulfuroxidans [1]
Litunavirus ab09 [1]
Pyrococcus furiosus [1]
Deinococcus radiodurans [1]
Streptococcus pyogenes [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Uncultured bdellovibrionales bacterium [1]
Linum usitatissimum [1]
Rotavirus a [1]
Bacillus subtilis [1]
Prevotella sp. [1]
Tetronarce californica [1]
Torpedo marmorata [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [25]
Beck M [18]
Khusainov I [18]
Kreysing JP [18]
Welsch S [18]
Taniguchi R [17]
Turonova B [17]
Xing H [17]
Yamashita K [17]
Hirano H [14]
Omura SN [14]
Itoh Y [13]
Sano FK [10]
Nakagawa R [9]
Liu Y [8]
Hallberg BM [7]
Ishiguro S [7]
Kusakizako T [7]
Yachie N [7]
Agarkova IV [6]
Baradaran R [6]
Cais O [6]
Cipullo M [6]
Dunigan DD [6]
Fang Q [6]
Gese GV [6]
Greger I [6]
Greger IH [6]
Guo M [6]
Hiramoto T [6]
Ho H [6]
Ivica J [6]
Khawaja A [6]
Klose T [6]
Krieger JM [6]
Mori H [6]
Nishimasu H [6]
Noel EA [6]
Ohmori T [6]
Okazaki S [6]
Rorbach J [6]
Rossmann MG [6]
Shao Q [6]
Stockwell I [6]
Valentin Gese G [6]
Van Etten Jl [6]
Wang A [6]
Xie L [6]
Zhang D [6]
Zhao X [6]
Alfonse LE [5]
Bui HB [5]
Cheng DR [5]
Ditommaso T [5]
Fujita H [5]
Garrity AJ [5]
Han BB [5]
Hoffman GR [5]
Horinaka K [5]
Inaba K [5]
Inoue M [5]
Iwata S [5]
Jividen K [5]
Kajimoto S [5]
Kashiwakura Y [5]
Kato Y [5]
Kikkawa M [5]
Kinoshita K [5]
Li J [5]
Li JX [5]
Li T [5]
Liu K [5]
Liu LN [5]
Maben Z [5]
Morinaga H [5]
Munoz G [5]
Nomura N [5]
Onishi K [5]
Ornstein A [5]
Scott DA [5]
Shihoya W [5]
Tanaka M [5]
Tanaka T [5]
Tsai SQ [5]
Tsutsumi A [5]
Uemura T [5]
Wang P [5]
Wang S [5]
Wang SM [5]
Watanabe S [5]
Yan WX [5]
Zhang J [5]
Zhang YZ [5]
Basle A [4]
Bellis NF [4]
Briani F [4]
Chriscoli V [4]
Cingolani G [4]
Enoki S [4]
Forti F [4]

Author by ORCID

Nureki O [24]
Khusainov I [18]
Kreysing JP [18]
Welsch S [18]
Beck M [18]
Turonova B [17]
Xing H [17]
Taniguchi R [17]
Yamashita K [14]
Omura SN [14]
Itoh Y [13]
Sano FK [10]
Kusakizako T [7]
Hallberg BM [7]
Ohmori T [6]
Ivica J [6]
Dunigan DD [6]
Shao Q [6]
Klose T [6]
Nishimasu H [6]
Rorbach J [6]
Van Etten Jl [6]
Baradaran R [6]
Greger IH [6]
Guo M [6]
Liu Y [6]
Khawaja A [6]
Noel EA [6]
Ho H [6]
Fang Q [6]
Wang A [6]
Zhao X [6]
Agarkova IV [6]
Ditommaso T [5]
Tanaka T [5]
Alfonse LE [5]
Kikkawa M [5]
Inaba K [5]
Tsai SQ [5]
Watanabe S [5]
Zhang YZ [5]
Ishiguro S [5]
Wang P [5]
Nomura N [5]
Liu LN [5]
Kashiwakura Y [5]
Iwata S [5]
Tsutsumi A [5]
Hiramoto T [5]
Shihoya W [5]
Mori H [5]
Wang S [5]
Li T [5]
Li J [5]
Onishi K [5]
Pape T [4]
Basle A [4]
Sofos N [4]
Montoya G [4]
Li K [4]
Marles-wright J [4]
Ng PC [4]
Okada Y [4]
Tenjo-castano F [4]
Kobayashi TA [4]
Chriscoli V [4]
Goh WI [3]
Nishizawa T [3]
Baker D [3]
Lay K [3]
Afonin DA [3]
Zhong FL [3]
Wu B [3]
Lukoyanova N [3]
Shi X [3]
Reversade B [3]
Cong Q [3]
Glukhov GS [3]
Mace K [3]
Zhang F [3]
Waksman G [3]
Robinson K [3]
Wright G [3]
Redzej A [3]
Costa TRD [3]
Orlova EV [3]
Oleinikov PD [3]
Venugopal H [2]
Ohwada T [2]
Jenni S [2]
Wang MW [2]
Harrison SC [2]
Zhou Q [2]
Kanai Y [2]
Shen C [2]
Chen L [2]
Aoki J [2]
Song S [2]
Kato T [2]
Kobayashi K [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-72876

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3D View

N4 Full Virion C6 Tail

CryoEM

Release date: June 10, 2026
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 9yf4

Bellis NF, Lokareddy RK, Kizziah JL, Cooper SL, Schneider DA, Forti F, Briani F, Cingolani G

To Be Published

EMD-72905

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N4 Bacteriophage Asymmetric Tail Gating Complex

CryoEM

Release date: June 10, 2026
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 9yft

Bellis NF, Lokareddy RK, Kizziah JL, Cooper SL, Schneider DA, Forti F, Briani F, Cingolani G

To Be Published

EMD-63767

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Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex

CryoEM

Release date: March 18, 2026
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9mb6
Q-score: 0.497

Omura SN, Nakagawa R, Kajimoto S, Okazaki S, Ishiguro S, Mori H, Onishi K, Kashiwakura Y, Hiramoto T, Horinaka K, Tanaka M, Hirano H, Jividen K, Yamashita K, Tsai SQ, Yachie N, Ohmori T, Nishimasu H, Nureki O

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-63768

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Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex

CryoEM

Release date: March 18, 2026
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9mb7
Q-score: 0.526

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-71803

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HDV particle subtomogram reconstruction

CryoEM

Release date: Jan. 28, 2026
Resolution: 36.0 Å
EM Method: Subtomogram averaging

Itskanov S, Ary B, Mehra U, Lew I, Novikov N, Schmitz U, Holdorf MM, Beran RK, Lansdon EB

PNAS (2026) 123 pp. e2519809123-e2519809123 [ Pubmed: 41564123 DOI: doi:10.1073/pnas.2519809123 ]

EMD-74075

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Pseudomonas phage DEV delta-gp53 mutant neck and tail portal, head-to-tail and tail tube proteins

CryoEM

Release date: Jan. 21, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9zdw
Q-score: 0.465

Nieto Noblecia J, Bellis NF, Antichi CA, Aminian S, Forti F, Falchi FA, Sposato D, Imperi F, Cingolani G, Briani F

Mbio (2026) 17 pp. e0356125-e0356125 [ DOI: doi:10.1128/mbio.03561-25 Pubmed: 41568963 ]

EMD-72877

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N4 Empty Particle C6 Tail

CryoEM

Release date: Dec. 24, 2025
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9yf5

Bellis NF, Lokareddy RK, Pavlenok M, Horton SLC, Kizziah JL, Forti F, Schneider DA, Niederweis M, Briani F, Cingolani G

Res Sq (2025) [ Pubmed: 41282253 DOI: doi:10.21203/rs.3.rs-7746245/v1 ]

EMD-62529

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Cryo-EM map of carboxysomal midi-shell: T 16 shell under C1 symmetry

CryoEM

Release date: Dec. 3, 2025
Resolution: 3.71 Å
EM Method: Single-particle

Li J, Li T, Wang S, Zhang YZ, Liu LN, Wang P

Plant Physiol (2025) 198 [ DOI: doi:10.1093/plphys/kiaf165 Pubmed: 40341945 ]

EMD-39942

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an intermediate state

CryoEM

Release date: Nov. 5, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8zcz
Q-score: 0.484

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

EMD-39944

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Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state

CryoEM

Release date: Nov. 5, 2025
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8zd0
Q-score: 0.572

Nat Commun (2026) 17 [ Pubmed: 41991526 DOI: doi:10.1038/s41467-026-71626-2 ]

Sort by: Download

Showing 1 - 10 of 117. Page 1 of 12

Display:

Statistics

Download

Select database:

EMDB [117]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [53]
Mus musculus [9]
(no species) [6]
Rattus norvegicus [6]
Paramecium bursaria chlorella virus 1 [6]
Staphylococcus aureus [5]
Halothiobacillus neapolitanus [5]
Scytonema hofmannii [4]
Severe acute respiratory syndrome coronavirus [3]
Enquatrovirus n4 [3]
Synthetic construct [3]
Escherichia coli [3]
Trypanosoma brucei [3]
Trypanosoma brucei [3]
Streptococcus pyogenes [2]
Camelus bactrianus [2]
Human herpesvirus 1 [1]
Human mastadenovirus f [1]
Enterobacteria phage t4 [1]
Indiana vesiculovirus [1]
Human immunodeficiency virus 1 [1]
Hepatitis delta virus [1]
Bacillus subtilis [1]
Acidibacillus sulfuroxidans [1]
Litunavirus ab09 [1]
Pyrococcus furiosus [1]
Deinococcus radiodurans [1]
Streptococcus pyogenes [1]
Dictyostelium discoideum [1]
Chikungunya virus [1]
Bacteriophage sp. [1]
Uncultured bdellovibrionales bacterium [1]
Linum usitatissimum [1]
Rotavirus a [1]
Bacillus subtilis [1]
Prevotella sp. [1]
Tetronarce californica [1]
Torpedo marmorata [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nureki O [25]
Beck M [18]
Khusainov I [18]
Kreysing JP [18]
Welsch S [18]
Taniguchi R [17]
Turonova B [17]
Xing H [17]
Yamashita K [17]
Hirano H [14]
Omura SN [14]
Itoh Y [13]
Sano FK [10]
Nakagawa R [9]
Liu Y [8]
Hallberg BM [7]
Ishiguro S [7]
Kusakizako T [7]
Yachie N [7]
Agarkova IV [6]
Baradaran R [6]
Cais O [6]
Cipullo M [6]
Dunigan DD [6]
Fang Q [6]
Gese GV [6]
Greger I [6]
Greger IH [6]
Guo M [6]
Hiramoto T [6]
Ho H [6]
Ivica J [6]
Khawaja A [6]
Klose T [6]
Krieger JM [6]
Mori H [6]
Nishimasu H [6]
Noel EA [6]
Ohmori T [6]
Okazaki S [6]
Rorbach J [6]
Rossmann MG [6]
Shao Q [6]
Stockwell I [6]
Valentin Gese G [6]
Van Etten Jl [6]
Wang A [6]
Xie L [6]
Zhang D [6]
Zhao X [6]
Alfonse LE [5]
Bui HB [5]
Cheng DR [5]
Ditommaso T [5]
Fujita H [5]
Garrity AJ [5]
Han BB [5]
Hoffman GR [5]
Horinaka K [5]
Inaba K [5]
Inoue M [5]
Iwata S [5]
Jividen K [5]
Kajimoto S [5]
Kashiwakura Y [5]
Kato Y [5]
Kikkawa M [5]
Kinoshita K [5]
Li J [5]
Li JX [5]
Li T [5]
Liu K [5]
Liu LN [5]
Maben Z [5]
Morinaga H [5]
Munoz G [5]
Nomura N [5]
Onishi K [5]
Ornstein A [5]
Scott DA [5]
Shihoya W [5]
Tanaka M [5]
Tanaka T [5]
Tsai SQ [5]
Tsutsumi A [5]
Uemura T [5]
Wang P [5]
Wang S [5]
Wang SM [5]
Watanabe S [5]
Yan WX [5]
Zhang J [5]
Zhang YZ [5]
Basle A [4]
Bellis NF [4]
Briani F [4]
Chriscoli V [4]
Cingolani G [4]
Enoki S [4]
Forti F [4]

Author by ORCID

Nureki O [24]
Khusainov I [18]
Kreysing JP [18]
Welsch S [18]
Beck M [18]
Turonova B [17]
Xing H [17]
Taniguchi R [17]
Yamashita K [14]
Omura SN [14]
Itoh Y [13]
Sano FK [10]
Kusakizako T [7]
Hallberg BM [7]
Ohmori T [6]
Ivica J [6]
Dunigan DD [6]
Shao Q [6]
Klose T [6]
Nishimasu H [6]
Rorbach J [6]
Van Etten Jl [6]
Baradaran R [6]
Greger IH [6]
Guo M [6]
Liu Y [6]
Khawaja A [6]
Noel EA [6]
Ho H [6]
Fang Q [6]
Wang A [6]
Zhao X [6]
Agarkova IV [6]
Ditommaso T [5]
Tanaka T [5]
Alfonse LE [5]
Kikkawa M [5]
Inaba K [5]
Tsai SQ [5]
Watanabe S [5]
Zhang YZ [5]
Ishiguro S [5]
Wang P [5]
Nomura N [5]
Liu LN [5]
Kashiwakura Y [5]
Iwata S [5]
Tsutsumi A [5]
Hiramoto T [5]
Shihoya W [5]
Mori H [5]
Wang S [5]
Li T [5]
Li J [5]
Onishi K [5]
Pape T [4]
Basle A [4]
Sofos N [4]
Montoya G [4]
Li K [4]
Marles-wright J [4]
Ng PC [4]
Okada Y [4]
Tenjo-castano F [4]
Kobayashi TA [4]
Chriscoli V [4]
Goh WI [3]
Nishizawa T [3]
Baker D [3]
Lay K [3]
Afonin DA [3]
Zhong FL [3]
Wu B [3]
Lukoyanova N [3]
Shi X [3]
Reversade B [3]
Cong Q [3]
Glukhov GS [3]
Mace K [3]
Zhang F [3]
Waksman G [3]
Robinson K [3]
Wright G [3]
Redzej A [3]
Costa TRD [3]
Orlova EV [3]
Oleinikov PD [3]
Venugopal H [2]
Ohwada T [2]
Jenni S [2]
Wang MW [2]
Harrison SC [2]
Zhou Q [2]
Kanai Y [2]
Shen C [2]
Chen L [2]
Aoki J [2]
Song S [2]
Kato T [2]
Kobayashi K [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links