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buffer_component_concentration_value:{0 TO 100}

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Current Database

  • EMDB [14329]

Current status

  • REL [14329]

Sample type

  • Complex [12812]
  • Protein [9916]
  • Ligand [5694]
  • RNA [1406]
  • DNA [931]
  • Cellular component [815]
  • Virus [742]
  • Cell [146]
  • Other [84]
  • Tissue [31]

Organism

  • Homo sapiens [4923]
  • Synthetic construct [1298]
  • Mus musculus [791]
  • Escherichia coli [782]
  • Severe acute respiratory syndrome coronavirus [559]
  • Saccharomyces cerevisiae [479]
  • Escherichia coli [407]
  • Rattus norvegicus [387]
  • Human immunodeficiency virus 1 [313]
  • Oryctolagus cuniculus [295]
  • Bos taurus [248]
  • Sus scrofa [242]
  • Saccharomyces cerevisiae [210]
  • Lama glama [187]
  • Xenopus laevis [171]
  • Arabidopsis thaliana [138]
  • Saccharomyces cerevisiae [112]
  • Escherichia coli [90]
  • Mycobacterium tuberculosis [84]
  • Macaca mulatta [84]
  • Drosophila melanogaster [83]
  • Mycolicibacterium smegmatis [78]
  • Staphylococcus aureus [74]
  • Pseudomonas aeruginosa [65]
  • Geobacillus stearothermophilus [64]
  • Influenza a virus [61]
  • Danio rerio [57]
  • Pseudomonas aeruginosa [51]
  • Bacillus subtilis [50]
  • Thermus thermophilus [50]
  • Escherichia coli [47]
  • Ovis aries [47]
  • Trichomonas vaginalis [45]
  • Zaire ebolavirus [42]
  • Salmonella enterica [41]
  • Bacillus subtilis [40]
  • Vicugna pacos [40]
  • Salmonella enterica [40]
  • Cricetulus griseus [38]
  • Escherichia virus t7 [38]
  • Aequorea victoria [38]
  • Chaetomium thermophilum [37]
  • Staphylococcus phage 812 [36]
  • Chaetomium thermophilum [36]
  • Torpedo marmorata [35]
  • Mycobacterium tuberculosis [35]
  • Porcine epidemic diarrhea virus [34]
  • Enterobacteria phage t4 [33]
  • Mycolicibacterium smegmatis [33]
  • Saccharomyces cerevisiae [32]
  • Human cytomegalovirus [31]
  • Aquifex aeolicus [31]
  • Schizosaccharomyces pombe [31]
  • Human coronavirus hku1 [30]
  • Caenorhabditis elegans [30]
  • Sus scrofa [30]
  • Human herpesvirus 1 [29]
  • Euglena gracilis [29]
  • Spinacia oleracea [29]
  • Thermococcus profundus [29]
  • Klebsiella pneumoniae [29]
  • Gallus gallus [29]
  • Rous sarcoma virus [28]
  • Neurospora crassa [28]
  • Adeno-associated dependoparvovirus a [27]
  • Influenza a virus [27]
  • Tetrahymena thermophila [26]
  • Pseudomonas phage jbd30 [25]
  • Streptococcus pyogenes [25]
  • Severe acute respiratory syndrome coronavirus [24]
  • Escherichia coli [24]
  • Severe acute respiratory syndrome coronavirus [23]
  • Betacoronavirus 1 [23]
  • Mycolicibacterium thermoresistibile [22]
  • Chlamydomonas reinhardtii [22]
  • Clostridium perfringens [21]
  • Mycobacterium phage bxb1 [21]
  • Macrocystis pyrifera [21]
  • Porphyridium purpureum [21]
  • Staphylococcus aureus [21]
  • Clostridioides difficile [20]
  • Methanosarcina acetivorans [20]
  • Dna molecule [20]
  • Vibrio cholerae [20]
  • Human immunodeficiency virus 2 [19]
  • Staphylococcus phage 812k1/420 [19]
  • Latrodectus tredecimguttatus [19]
  • Human herpesvirus 1 [18]
  • Enterobacteria phage t4 [18]
  • Methanospirillum hungatei [18]
  • Azotobacter vinelandii [18]
  • Plasmodium falciparum [18]
  • Streptomyces coelicolor [17]
  • (no species) [17]
  • Orthoflavivirus flavi [17]
  • Escherichia coli [17]
  • Camelidae mixed library [17]
  • Streptococcus pyogenes [17]
  • Bacteroides thetaiotaomicron [17]
  • Gloeobacter violaceus [17]

EM Method

  • Single-particle [12673]
  • Tomography [749]
  • Helical reconstruction [545]
  • Subtomogram averaging [315]
  • Electron Crystallography [47]

Resolution

  • < 2Å [192]
  • ≥ 2Å and < 3Å [3413]
  • ≥ 3Å and < 4Å [6126]
  • ≥ 4Å and < 5Å [1536]
  • ≥ 5Å and < 6Å [407]
  • ≥ 6Å and < 8Å [639]
  • ≥ 8Å and < 12Å [500]
  • ≥ 12Å and < 16Å [240]
  • ≥ 16Å and < 20Å [163]
  • ≥ 20Å and < 30Å [519]
  • ≥ 30Å [458]

Model molecular weight

  • 0-50 kDa [191]
  • 50-100 kDa [511]
  • 100-250 kDa [2616]
  • 250-500 kDa [2424]
  • 500-1000 kDa [1250]
  • 1-2 MDa [591]
  • 2-5 MDa [521]
  • 5-10 MDa [128]
  • > 10 MDa [124]

Release Date

  • 2026 [2268]
  • 2025 [2886]
  • 2024 [2201]
  • 2023 [1792]
  • 2022 [1379]
  • 2021 [1115]
  • 2020 [1017]
  • 2019 [598]
  • 2018 [508]
  • 2017 [266]
  • 2016 [299]

Author by name

  • Liu J [615]
  • Ren G [578]
  • Zhang M [536]
  • Ward AB [466]
  • Wang S [432]
  • Wu H [384]
  • Liu Y [352]
  • Hu Z [346]
  • Gang O [343]
  • Lyumkis D [281]
  • Williamson JR [241]
  • Wang Y [237]
  • Marks AR [218]
  • Miotto MC [215]
  • Sobolevsky AI [212]
  • Andersen ES [210]
  • Geary C [209]
  • Mcrae EKS [198]
  • Cottrell CA [194]
  • Li Y [191]
  • Dridi H [189]
  • Reiken S [189]
  • Weninger G [188]
  • Zhang L [184]
  • Sewall LM [182]
  • Zhang Y [182]
  • Sheng K [180]
  • Hu Y [175]
  • Plevka P [175]
  • Wang J [171]
  • Zhang J [169]
  • Yuan Q [167]
  • Wronska A [166]
  • Wu M [166]
  • Tchagou C [159]
  • Antanasijevic A [157]
  • Dong X [155]
  • Li H [153]
  • Ozorowski G [152]
  • Li Z [150]
  • Crispin M [148]
  • Zhou ZH [146]
  • Fuzik T [145]
  • Zhang Z [145]
  • Chen J [144]
  • Novacek J [144]
  • Yelshanskaya MV [141]
  • Zhang X [138]
  • Zhou L [138]
  • Lee J [134]
  • Gangwar SP [133]
  • Copps J [131]
  • Greber BJ [131]
  • Yen LY [131]
  • Klinge S [130]
  • Xu C [129]
  • Hirst J [124]
  • Montefiori DC [124]
  • He Z [123]
  • Buzovetsky O [122]
  • Kato T [122]
  • Allen JD [121]
  • Rabuck-gibbons JN [120]
  • Yang Y [120]
  • Liu C [118]
  • Lander GC [117]
  • Tian H [117]
  • Han F [116]
  • Burton DR [115]
  • Zhou J [115]
  • Letts JA [114]
  • Torres JL [114]
  • Baker D [111]
  • Sanders RW [111]
  • Bjorkman PJ [110]
  • Turner HL [110]
  • Bangaru S [109]
  • Hu YQ [108]
  • Itoh Y [108]
  • Zhang S [106]
  • Namba K [104]
  • Newton TP [103]
  • Graham BS [102]
  • Kotecha A [102]
  • Aiyer S [101]
  • Moore JP [101]
  • Blaza JN [99]
  • Wang H [99]
  • He ZX [97]
  • Hite RK [96]
  • Hsu STD [96]
  • Amunts A [95]
  • Chang YC [95]
  • Raunser S [95]
  • Yang TJ [95]
  • Wang L [94]
  • Chen X [93]
  • Jiang Y [93]
  • Yin Z [93]
  • Steyaert J [92]

Author by ORCID

  • Liu J [536]
  • Ren G [536]
  • Andersen ES [204]
  • Lyumkis D [191]
  • Zhang M [173]
  • Ward AB [161]
  • Miotto MC [151]
  • Sobolevsky AI [146]
  • Klinge S [115]
  • Weninger G [114]
  • Zhou L [113]
  • Williamson JR [101]
  • Wronska A [101]
  • Copps J [92]
  • Plevka P [91]
  • Gangwar SP [89]
  • Hirst J [85]
  • Fuzik T [85]
  • Blaza JN [82]
  • Dridi H [82]
  • Crispin M [82]
  • Zhou ZH [82]
  • Allen JD [82]
  • Chang YC [77]
  • Chung I [77]
  • Cottrell CA [77]
  • Karakas E [76]
  • Lander GC [76]
  • Aiyer S [75]
  • Kurnikova MG [74]
  • Bridges HR [73]
  • Newton TP [73]
  • Letts JA [73]
  • Marks AR [72]
  • Baker D [68]
  • Yin Z [67]
  • Yang TJ [67]
  • Teng F [66]
  • Zhou R [66]
  • Yang F [66]
  • Hu Y [66]
  • Wu M [66]
  • Zhou J [66]
  • Tian H [66]
  • Yang Y [66]
  • Zhang S [66]
  • He Z [66]
  • Han F [66]
  • Aktolun M [65]
  • Kotecha A [65]
  • Pollak MN [65]
  • Li N [65]
  • Kato T [64]
  • Burton DR [63]
  • Greber BJ [63]
  • Cook BD [63]
  • Aricescu AR [63]
  • Crotty S [62]
  • Novacek J [62]
  • Grotjahn DA [61]
  • Narehood SM [59]
  • Li Y [59]
  • Namba K [56]
  • Steyaert J [53]
  • Reiken S [52]
  • Liu Y [52]
  • Bangaru S [51]
  • Antanasijevic A [51]
  • Tang Q [51]
  • Lan YJ [51]
  • Nadezhdin KD [51]
  • Hite RK [51]
  • Larsson DSD [50]
  • Selmer M [50]
  • Yelshanskaya MV [50]
  • Fromme JC [50]
  • Torres JL [50]
  • Li H [49]
  • Malinauskas T [49]
  • Irvine DJ [49]
  • Dominguez R [49]
  • Schur FKM [49]
  • Koh AF [47]
  • Sheng K [47]
  • Dong X [47]
  • Cushing VI [47]
  • Wiliamson JR [47]
  • Lee J [47]
  • Ali S [46]
  • Hurley JH [45]
  • Hillen HS [45]
  • Pardon E [45]
  • Mihaylov DB [45]
  • Ozorowski G [45]
  • Gati C [45]
  • Barbazanges M [43]
  • King NP [43]
  • Barrett AGM [43]
  • Johnson PJ [43]
  • Jurgaityte K [43]

Journal

  • NAT COMMUN [3121]
  • TO BE PUBLISHED [1655]
  • NATURE [1176]
  • BIORXIV [960]
  • NAT STRUCT MOL BIOL [921]
  • PNAS [737]
  • SCI ADV [605]
  • SCIENCE [569]
  • ELIFE [478]
  • CELL [401]
  • NUCLEIC ACIDS RES [375]
  • STRUCTURE [360]
  • MOL CELL [355]
  • CELL REP [212]
  • COMMUN BIOL [190]
  • J BIOL CHEM [185]
  • ACTA CRYSTALLOGR D STRUCT BIOL [174]
  • EMBO J [136]
  • NAT CHEM BIOL [126]
  • J MOL BIOL [116]
  • PLOS PATHOG [105]
  • PROTEIN SCI [90]
  • SCI REP [81]
  • J VIROL [77]
  • NAT MICROBIOL [74]
  • J STRUCT BIOL [68]
  • NAT METHODS [68]
  • IMMUNITY [56]
  • J STRUCT BIOL X [54]
  • NPJ VACCINES [54]
  • J AM CHEM SOC [52]
  • FRONT ENDOCRINOL [51]
  • J CLIN INV [49]
  • PLOS ONE [48]
  • CELL RES [43]
  • IUCRJ [43]
  • MBIO [43]
  • EMBO REP [41]
  • CELL REP METHODS [36]
  • J CELL BIOL [36]
  • PLOS BIOL [36]
  • NAT PLANTS [34]
  • BIOCHEMISTRY [32]
  • FEBS J [32]
  • ISCIENCE [32]
  • J.THROMB.HAEMOST. [31]
  • SCI TRANSL MED [31]
  • NAT NANOTECHNOL [29]
  • PNAS NEXUS [29]
  • NAT CATAL [23]
  • ANGEW CHEM INT ED ENGL [22]
  • CELL HOST MICROBE [21]
  • INT J BIOL MACROMOL [18]
  • INT J MOL SCI [18]
  • LIFE SCI ALLIANCE [18]
  • VIRUSES [18]
  • RES SQ [17]
  • ACS CHEM BIOL [16]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
  • ACTA NEUROPATHOL [14]
  • ADV SCI [14]
  • BIOMOLECULES [14]
  • BIOPHYS J [14]
  • GENES DEV [14]
  • J GEN VIROL [14]
  • MOL BIOL CELL [14]
  • NAT BIOTECHNOL [13]
  • NEURON [13]
  • ACS NANO [12]
  • BLOOD [12]
  • CURR RES STRUCT BIOL [12]
  • J LIPID RES [12]
  • BIOCHEM J [11]
  • J BACTERIOL [11]
  • J MED CHEM [11]
  • NAT IMMUNOL [11]
  • SCI IMMUNOL [11]
  • ACS INFECT DIS. [10]
  • FEBS LETT [10]
  • FRONT IMMUNOL [10]
  • J MED VIROL [10]
  • SMALL [10]
  • PROG BIOPHYS MOL BIOL [9]
  • ACS CATAL [8]
  • BIOCHIM BIOPHYS ACTA BIOENERG [8]
  • CELL CHEM BIOL [8]
  • COMMUN CHEM [8]
  • ENVIRON SCI TECHNOL. [8]
  • FASEB J [8]
  • J EXP MED [8]
  • NAT CELL BIOL [8]
  • CURR BIOL [7]
  • PLANT COMMUN. [7]
  • VIROLOGY [7]
  • ACS CENT SCI [6]
  • ADV MATER [6]
  • BIOCHEM BIOPHYS RES COMMUN [6]
  • CELL DEATH DIFFER. [6]
  • GENES CELLS [6]
  • HEMASPHERE [6]

Software

  • CRYOSPARC [6846]
  • RELION [5411]
  • CTFFIND [1371]
  • GCTF [972]
  • IPET [446]
  • TOMOCTF [375]
  • CISTEM [191]
  • FREALIGN [190]
  • WARP [172]
  • IMOD [144]
  • COOT [141]
  • UCSF CHIMERAX [138]
  • EMAN2 [119]
  • DYNAMO [94]
  • EMAN [94]
  • PHENIX [73]
  • MATLAB [57]
  • UCSF CHIMERA [51]
  • SPIDER [44]
  • SPHIRE [43]
  • PEET [42]
  • CRYOLO [37]
  • CRYODRGN [35]
  • XMIPP [35]
  • JSPR [34]
  • CTFFIND3 [32]
  • AV3 [30]
  • ISOLDE [30]
  • APPION [27]
  • AUTO3DEM [26]
  • IMAGIC [23]
  • NOVACTF [22]
  • SPARX [20]
  • SUBTOM [20]
  • CTFTILT [19]
  • PYTOM [18]
  • SCIPION [17]
  • TOM TOOLBOX [17]
  • AIMLESS [16]
  • ETOMO [16]
  • J3DR [16]
  • JALIGN [16]
  • SIMPLE [16]
  • CTFPHASEFLIP [15]
  • TOMO3D [15]
  • CTFFIND4 [14]
  • MOLREP [14]
  • POINTLESS [14]
  • TOM [14]
  • EMCLARITY [13]
  • FREALIX [11]
  • EMREADY [10]
  • M [9]
  • BSOFT [8]
  • EMIRA [8]
  • AMIRA [7]
  • CTFIND3 [7]
  • EPU [5]
  • REFMAC [5]
  • IMOD/PEET [4]
  • MRA/MSA [4]
  • SPRING [4]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • EMAN1 [3]
  • IHRSR [3]
  • PHASER [3]
  • 3DMOD [2]
  • E2HELIXBOXER [2]
  • GCTF/RELION [2]
  • MOTIONCORR2 [2]
  • MPSA [2]
  • NAMD [2]
  • SCALEPACK [2]
  • SHELXD [2]
  • SPARX/EMAN2 [2]
  • XSCALE [2]
  • ACE [1]
  • AUTO [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CCP4 PACKAGE [1]
  • CFTFIND [1]
  • CRYOSPAR [1]
  • E2HELIXBOXER.PY [1]
  • ELITE3D [1]
  • FEI TOMOGRAPHY [1]
  • FREALIGNX [1]
  • GAUTOMATCH [1]
  • I3 [1]
  • IHRSH [1]
  • IMIRS [1]
  • JSUBTOMO [1]
  • LEGINON [1]
  • MDFF [1]
  • MRC IMAGE PROCESSING PACKAGE [1]
  • REION [1]
  • RELION2 [1]
  • ROSETTA [1]
  • SEGREFINETHREED [1]

Microscope

  • FEI TITAN KRIOS [7354]
  • TFS KRIOS [4077]
  • FEI TALOS ARCTICA [852]
  • TFS GLACIOS [507]
  • JEOL CRYO ARM 300 [278]
  • FEI TECNAI F20 [177]
  • FEI POLARA 300 [163]
  • FEI TECNAI SPIRIT [162]
  • FEI TITAN [125]
  • ZEISS LIBRA120PLUS [108]
  • TFS TALOS [95]
  • JEOL CRYO ARM 200 [65]
  • FEI TECNAI 20 [64]
  • FEI TECNAI ARCTICA [60]
  • FEI TECNAI F30 [54]
  • FEI/PHILIPS EM420 [46]
  • FEI TECNAI 12 [29]
  • JEOL 3200FSC [24]
  • TFS TALOS F200C [23]
  • JEOL 2200FS [11]
  • JEOL 2100 [10]
  • FEI/PHILIPS CM200FEG [8]
  • JEOL 3200FS [8]
  • JEOL 2100F [7]
  • TFS TITAN THEMIS [6]
  • TFS TALOS L120C [5]
  • JEOL 1230 [4]
  • JEOL 2200FSC [4]
  • JEOL 1400 [3]
  • FEI/PHILIPS CM120T [2]
  • JEOL 100CX [2]
  • JEOL 2010F [2]
  • JEOL 3000SFF [2]
  • FEI MORGAGNI [1]
  • FEI/PHILIPS CM12 [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [13873]
  • LAB6 [399]
  • OTHER [43]
  • TUNGSTEN HAIRPIN [14]

Film or detector model

  • GATAN K3 6K X 4K [3543]
  • GATAN K3 BIOQUANTUM 6K X 4K [3474]
  • GATAN K2 SUMMIT 4K X 4K [2696]
  • FEI FALCON IV 4K X 4K [1391]
  • FEI FALCON III 4K X 4K [874]
  • TFS FALCON 4I 4K X 4K [622]
  • FEI FALCON II 4K X 4K [386]
  • GATAN K2 QUANTUM 4K X 4K [381]
  • GATAN ULTRASCAN 4000 4K X 4K [223]
  • TVIPS TEMCAM-F416 4K X 4K [222]
  • GATAN K3 BIOCONTINUUM 6K X 4K [198]
  • OTHER [95]
  • FEI CETA 4K X 4K [49]
  • FEI EAGLE 4K X 4K [46]
  • GATAN K2 BASE 4K X 4K [40]
  • DIRECT ELECTRON DE-20 5K X 3K [33]
  • FEI FALCON I 4K X 4K [13]
  • GATAN ULTRASCAN 1000 2K X 2K [13]
  • TVIPS TEMCAM-F415 4K X 4K [11]
  • DIRECT ELECTRON DE-64 8K X 8K [10]
  • FEI EAGLE 2K X 2K [9]
  • GATAN K2 IS 4K X 4K [9]
  • KODAK SO-163 FILM [9]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • DIRECT ELECTRON DE-16 4K X 4K [5]
  • GATAN MULTISCAN [5]
  • DIRECT ELECTRON APOLLO 4K X 4K [4]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • GATAN ALPINE 2.3K X 3.2K [2]
  • GATAN ORIUS SC1000 4K X 2.7K [1]
  • KODAK 4489 FILM [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • UniProt [9057]
  • PDB [8404]
  • AlphaFold DB [8032]
  • PDBe-Kb [7706]
  • InterPro [6571]
  • Gene Ontology [6515]
  • Pfam [6077]
  • ChEBI [5374]
  • ChEMBL [4837]
  • DrugBank [4386]
  • Complex Portal [2743]
  • EMPIAR [1940]
  • SCOP2 [174]
  • CATH [163]
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EMD-49677
Download Map
3D View
Pseudomonas aeruginosa CdrA N -terminal domain
CryoEM
Release date: Oct. 7, 2026
Resolution: 6.0 Å
EM Method: Single-particle

Fazio NT, Moss E, Barrington MJ, BoClair M, Jaysingh A, Di Trani J, Reichhardt C

Commun Biol (2026) [ DOI: doi:10.1038/s42003-026-10970-x ]

EMD-49679
Download Map
3D View
Pseudomonas aeruginosa CdrA N -terminal domain plus 6 repeats of the extension domain
CryoEM
Release date: Oct. 7, 2026
Resolution: 11.0 Å
EM Method: Single-particle

Fazio NT, Moss E, Barrington MJ, BoClair M, Jaysingh A, Di Trani J, Reichhardt C

Commun Biol (2026) [ DOI: doi:10.1038/s42003-026-10970-x ]

EMD-54442
Download Map
3D View
MspA-M2 in a POPC nanodisc
CryoEM
Release date: Oct. 7, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9s15
Q-score: 0.66
Similar entry percentile: 98%

Ashworth M, Bayfield OW, Noble OW, Plevin MJ, Antson AA

To Be Published

EMD-56387
Download Map
3D View
Mature MoMLV capsid hexamer 3-fold interface from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9tx4
Q-score: 0.337
Similar entry percentile: 49%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56388
Download Map
3D View
Mature MoMLV capsid hexamer structure from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9tx5
Q-score: 0.466
Similar entry percentile: 63%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56389
Download Map
3D View
Mature MoMLV capsid pentamer structure from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9tx6
Q-score: 0.411
Similar entry percentile: 61%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56390
Download Map
3D View
Mature MPMV capsid hexamer 3-fold interface from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9tx7
Q-score: 0.33
Similar entry percentile: 39%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56391
Download Map
3D View
Mature MPMV E26A capsid pentamer structure from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 9tx8
Q-score: 0.323
Similar entry percentile: 71%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56392
Download Map
3D View
Mature MPMV E26A capsid hexamer structure from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9tx9
Q-score: 0.43
Similar entry percentile: 63%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

EMD-56393
Download Map
3D View
Mature MPMV capsid pentamer structure from capsid-like particles
CryoEM
Release date: Oct. 7, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9txa
Q-score: 0.49
Similar entry percentile: 64%

Klarhof JO, Mallery DL, Stacey JCV, Torre D, Rumlova M, Ruml T, Briggs JAG, James LC

Nat Commun (2026) 17 [ Pubmed: 42764334 DOI: doi:10.1038/s41467-026-76510-7 ]

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Current Database

  • EMDB [14329]

Current status

  • REL [14329]

Sample type

  • Complex [12812]
  • Protein [9916]
  • Ligand [5694]
  • RNA [1406]
  • DNA [931]
  • Cellular component [815]
  • Virus [742]
  • Cell [146]
  • Other [84]
  • Tissue [31]

Organism

  • Homo sapiens [4923]
  • Synthetic construct [1298]
  • Mus musculus [791]
  • Escherichia coli [782]
  • Severe acute respiratory syndrome coronavirus [559]
  • Saccharomyces cerevisiae [479]
  • Escherichia coli [407]
  • Rattus norvegicus [387]
  • Human immunodeficiency virus 1 [313]
  • Oryctolagus cuniculus [295]
  • Bos taurus [248]
  • Sus scrofa [242]
  • Saccharomyces cerevisiae [210]
  • Lama glama [187]
  • Xenopus laevis [171]
  • Arabidopsis thaliana [138]
  • Saccharomyces cerevisiae [112]
  • Escherichia coli [90]
  • Mycobacterium tuberculosis [84]
  • Macaca mulatta [84]
  • Drosophila melanogaster [83]
  • Mycolicibacterium smegmatis [78]
  • Staphylococcus aureus [74]
  • Pseudomonas aeruginosa [65]
  • Geobacillus stearothermophilus [64]
  • Influenza a virus [61]
  • Danio rerio [57]
  • Pseudomonas aeruginosa [51]
  • Bacillus subtilis [50]
  • Thermus thermophilus [50]
  • Escherichia coli [47]
  • Ovis aries [47]
  • Trichomonas vaginalis [45]
  • Zaire ebolavirus [42]
  • Salmonella enterica [41]
  • Bacillus subtilis [40]
  • Vicugna pacos [40]
  • Salmonella enterica [40]
  • Cricetulus griseus [38]
  • Escherichia virus t7 [38]
  • Aequorea victoria [38]
  • Chaetomium thermophilum [37]
  • Staphylococcus phage 812 [36]
  • Chaetomium thermophilum [36]
  • Torpedo marmorata [35]
  • Mycobacterium tuberculosis [35]
  • Porcine epidemic diarrhea virus [34]
  • Enterobacteria phage t4 [33]
  • Mycolicibacterium smegmatis [33]
  • Saccharomyces cerevisiae [32]
  • Human cytomegalovirus [31]
  • Aquifex aeolicus [31]
  • Schizosaccharomyces pombe [31]
  • Human coronavirus hku1 [30]
  • Caenorhabditis elegans [30]
  • Sus scrofa [30]
  • Human herpesvirus 1 [29]
  • Euglena gracilis [29]
  • Spinacia oleracea [29]
  • Thermococcus profundus [29]
  • Klebsiella pneumoniae [29]
  • Gallus gallus [29]
  • Rous sarcoma virus [28]
  • Neurospora crassa [28]
  • Adeno-associated dependoparvovirus a [27]
  • Influenza a virus [27]
  • Tetrahymena thermophila [26]
  • Pseudomonas phage jbd30 [25]
  • Streptococcus pyogenes [25]
  • Severe acute respiratory syndrome coronavirus [24]
  • Escherichia coli [24]
  • Severe acute respiratory syndrome coronavirus [23]
  • Betacoronavirus 1 [23]
  • Mycolicibacterium thermoresistibile [22]
  • Chlamydomonas reinhardtii [22]
  • Clostridium perfringens [21]
  • Mycobacterium phage bxb1 [21]
  • Macrocystis pyrifera [21]
  • Porphyridium purpureum [21]
  • Staphylococcus aureus [21]
  • Clostridioides difficile [20]
  • Methanosarcina acetivorans [20]
  • Dna molecule [20]
  • Vibrio cholerae [20]
  • Human immunodeficiency virus 2 [19]
  • Staphylococcus phage 812k1/420 [19]
  • Latrodectus tredecimguttatus [19]
  • Human herpesvirus 1 [18]
  • Enterobacteria phage t4 [18]
  • Methanospirillum hungatei [18]
  • Azotobacter vinelandii [18]
  • Plasmodium falciparum [18]
  • Streptomyces coelicolor [17]
  • (no species) [17]
  • Orthoflavivirus flavi [17]
  • Escherichia coli [17]
  • Camelidae mixed library [17]
  • Streptococcus pyogenes [17]
  • Bacteroides thetaiotaomicron [17]
  • Gloeobacter violaceus [17]

EM Method

  • Single-particle [12673]
  • Tomography [749]
  • Helical reconstruction [545]
  • Subtomogram averaging [315]
  • Electron Crystallography [47]

Resolution

  • < 2Å [192]
  • ≥ 2Å and < 3Å [3413]
  • ≥ 3Å and < 4Å [6126]
  • ≥ 4Å and < 5Å [1536]
  • ≥ 5Å and < 6Å [407]
  • ≥ 6Å and < 8Å [639]
  • ≥ 8Å and < 12Å [500]
  • ≥ 12Å and < 16Å [240]
  • ≥ 16Å and < 20Å [163]
  • ≥ 20Å and < 30Å [519]
  • ≥ 30Å [458]

Model molecular weight

  • 0-50 kDa [191]
  • 50-100 kDa [511]
  • 100-250 kDa [2616]
  • 250-500 kDa [2424]
  • 500-1000 kDa [1250]
  • 1-2 MDa [591]
  • 2-5 MDa [521]
  • 5-10 MDa [128]
  • > 10 MDa [124]

Release Date

  • 2026 [2268]
  • 2025 [2886]
  • 2024 [2201]
  • 2023 [1792]
  • 2022 [1379]
  • 2021 [1115]
  • 2020 [1017]
  • 2019 [598]
  • 2018 [508]
  • 2017 [266]
  • 2016 [299]

Author by name

  • Liu J [615]
  • Ren G [578]
  • Zhang M [536]
  • Ward AB [466]
  • Wang S [432]
  • Wu H [384]
  • Liu Y [352]
  • Hu Z [346]
  • Gang O [343]
  • Lyumkis D [281]
  • Williamson JR [241]
  • Wang Y [237]
  • Marks AR [218]
  • Miotto MC [215]
  • Sobolevsky AI [212]
  • Andersen ES [210]
  • Geary C [209]
  • Mcrae EKS [198]
  • Cottrell CA [194]
  • Li Y [191]
  • Dridi H [189]
  • Reiken S [189]
  • Weninger G [188]
  • Zhang L [184]
  • Sewall LM [182]
  • Zhang Y [182]
  • Sheng K [180]
  • Hu Y [175]
  • Plevka P [175]
  • Wang J [171]
  • Zhang J [169]
  • Yuan Q [167]
  • Wronska A [166]
  • Wu M [166]
  • Tchagou C [159]
  • Antanasijevic A [157]
  • Dong X [155]
  • Li H [153]
  • Ozorowski G [152]
  • Li Z [150]
  • Crispin M [148]
  • Zhou ZH [146]
  • Fuzik T [145]
  • Zhang Z [145]
  • Chen J [144]
  • Novacek J [144]
  • Yelshanskaya MV [141]
  • Zhang X [138]
  • Zhou L [138]
  • Lee J [134]
  • Gangwar SP [133]
  • Copps J [131]
  • Greber BJ [131]
  • Yen LY [131]
  • Klinge S [130]
  • Xu C [129]
  • Hirst J [124]
  • Montefiori DC [124]
  • He Z [123]
  • Buzovetsky O [122]
  • Kato T [122]
  • Allen JD [121]
  • Rabuck-gibbons JN [120]
  • Yang Y [120]
  • Liu C [118]
  • Lander GC [117]
  • Tian H [117]
  • Han F [116]
  • Burton DR [115]
  • Zhou J [115]
  • Letts JA [114]
  • Torres JL [114]
  • Baker D [111]
  • Sanders RW [111]
  • Bjorkman PJ [110]
  • Turner HL [110]
  • Bangaru S [109]
  • Hu YQ [108]
  • Itoh Y [108]
  • Zhang S [106]
  • Namba K [104]
  • Newton TP [103]
  • Graham BS [102]
  • Kotecha A [102]
  • Aiyer S [101]
  • Moore JP [101]
  • Blaza JN [99]
  • Wang H [99]
  • He ZX [97]
  • Hite RK [96]
  • Hsu STD [96]
  • Amunts A [95]
  • Chang YC [95]
  • Raunser S [95]
  • Yang TJ [95]
  • Wang L [94]
  • Chen X [93]
  • Jiang Y [93]
  • Yin Z [93]
  • Steyaert J [92]

Author by ORCID

  • Liu J [536]
  • Ren G [536]
  • Andersen ES [204]
  • Lyumkis D [191]
  • Zhang M [173]
  • Ward AB [161]
  • Miotto MC [151]
  • Sobolevsky AI [146]
  • Klinge S [115]
  • Weninger G [114]
  • Zhou L [113]
  • Williamson JR [101]
  • Wronska A [101]
  • Copps J [92]
  • Plevka P [91]
  • Gangwar SP [89]
  • Hirst J [85]
  • Fuzik T [85]
  • Blaza JN [82]
  • Dridi H [82]
  • Crispin M [82]
  • Zhou ZH [82]
  • Allen JD [82]
  • Chang YC [77]
  • Chung I [77]
  • Cottrell CA [77]
  • Karakas E [76]
  • Lander GC [76]
  • Aiyer S [75]
  • Kurnikova MG [74]
  • Bridges HR [73]
  • Newton TP [73]
  • Letts JA [73]
  • Marks AR [72]
  • Baker D [68]
  • Yin Z [67]
  • Yang TJ [67]
  • Teng F [66]
  • Zhou R [66]
  • Yang F [66]
  • Hu Y [66]
  • Wu M [66]
  • Zhou J [66]
  • Tian H [66]
  • Yang Y [66]
  • Zhang S [66]
  • He Z [66]
  • Han F [66]
  • Aktolun M [65]
  • Kotecha A [65]
  • Pollak MN [65]
  • Li N [65]
  • Kato T [64]
  • Burton DR [63]
  • Greber BJ [63]
  • Cook BD [63]
  • Aricescu AR [63]
  • Crotty S [62]
  • Novacek J [62]
  • Grotjahn DA [61]
  • Narehood SM [59]
  • Li Y [59]
  • Namba K [56]
  • Steyaert J [53]
  • Reiken S [52]
  • Liu Y [52]
  • Bangaru S [51]
  • Antanasijevic A [51]
  • Tang Q [51]
  • Lan YJ [51]
  • Nadezhdin KD [51]
  • Hite RK [51]
  • Larsson DSD [50]
  • Selmer M [50]
  • Yelshanskaya MV [50]
  • Fromme JC [50]
  • Torres JL [50]
  • Li H [49]
  • Malinauskas T [49]
  • Irvine DJ [49]
  • Dominguez R [49]
  • Schur FKM [49]
  • Koh AF [47]
  • Sheng K [47]
  • Dong X [47]
  • Cushing VI [47]
  • Wiliamson JR [47]
  • Lee J [47]
  • Ali S [46]
  • Hurley JH [45]
  • Hillen HS [45]
  • Pardon E [45]
  • Mihaylov DB [45]
  • Ozorowski G [45]
  • Gati C [45]
  • Barbazanges M [43]
  • King NP [43]
  • Barrett AGM [43]
  • Johnson PJ [43]
  • Jurgaityte K [43]

Journal

  • NAT COMMUN [3121]
  • TO BE PUBLISHED [1655]
  • NATURE [1176]
  • BIORXIV [960]
  • NAT STRUCT MOL BIOL [921]
  • PNAS [737]
  • SCI ADV [605]
  • SCIENCE [569]
  • ELIFE [478]
  • CELL [401]
  • NUCLEIC ACIDS RES [375]
  • STRUCTURE [360]
  • MOL CELL [355]
  • CELL REP [212]
  • COMMUN BIOL [190]
  • J BIOL CHEM [185]
  • ACTA CRYSTALLOGR D STRUCT BIOL [174]
  • EMBO J [136]
  • NAT CHEM BIOL [126]
  • J MOL BIOL [116]
  • PLOS PATHOG [105]
  • PROTEIN SCI [90]
  • SCI REP [81]
  • J VIROL [77]
  • NAT MICROBIOL [74]
  • J STRUCT BIOL [68]
  • NAT METHODS [68]
  • IMMUNITY [56]
  • J STRUCT BIOL X [54]
  • NPJ VACCINES [54]
  • J AM CHEM SOC [52]
  • FRONT ENDOCRINOL [51]
  • J CLIN INV [49]
  • PLOS ONE [48]
  • CELL RES [43]
  • IUCRJ [43]
  • MBIO [43]
  • EMBO REP [41]
  • CELL REP METHODS [36]
  • J CELL BIOL [36]
  • PLOS BIOL [36]
  • NAT PLANTS [34]
  • BIOCHEMISTRY [32]
  • FEBS J [32]
  • ISCIENCE [32]
  • J.THROMB.HAEMOST. [31]
  • SCI TRANSL MED [31]
  • NAT NANOTECHNOL [29]
  • PNAS NEXUS [29]
  • NAT CATAL [23]
  • ANGEW CHEM INT ED ENGL [22]
  • CELL HOST MICROBE [21]
  • INT J BIOL MACROMOL [18]
  • INT J MOL SCI [18]
  • LIFE SCI ALLIANCE [18]
  • VIRUSES [18]
  • RES SQ [17]
  • ACS CHEM BIOL [16]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
  • ACTA NEUROPATHOL [14]
  • ADV SCI [14]
  • BIOMOLECULES [14]
  • BIOPHYS J [14]
  • GENES DEV [14]
  • J GEN VIROL [14]
  • MOL BIOL CELL [14]
  • NAT BIOTECHNOL [13]
  • NEURON [13]
  • ACS NANO [12]
  • BLOOD [12]
  • CURR RES STRUCT BIOL [12]
  • J LIPID RES [12]
  • BIOCHEM J [11]
  • J BACTERIOL [11]
  • J MED CHEM [11]
  • NAT IMMUNOL [11]
  • SCI IMMUNOL [11]
  • ACS INFECT DIS. [10]
  • FEBS LETT [10]
  • FRONT IMMUNOL [10]
  • J MED VIROL [10]
  • SMALL [10]
  • PROG BIOPHYS MOL BIOL [9]
  • ACS CATAL [8]
  • BIOCHIM BIOPHYS ACTA BIOENERG [8]
  • CELL CHEM BIOL [8]
  • COMMUN CHEM [8]
  • ENVIRON SCI TECHNOL. [8]
  • FASEB J [8]
  • J EXP MED [8]
  • NAT CELL BIOL [8]
  • CURR BIOL [7]
  • PLANT COMMUN. [7]
  • VIROLOGY [7]
  • ACS CENT SCI [6]
  • ADV MATER [6]
  • BIOCHEM BIOPHYS RES COMMUN [6]
  • CELL DEATH DIFFER. [6]
  • GENES CELLS [6]
  • HEMASPHERE [6]

Software

  • CRYOSPARC [6846]
  • RELION [5411]
  • CTFFIND [1371]
  • GCTF [972]
  • IPET [446]
  • TOMOCTF [375]
  • CISTEM [191]
  • FREALIGN [190]
  • WARP [172]
  • IMOD [144]
  • COOT [141]
  • UCSF CHIMERAX [138]
  • EMAN2 [119]
  • DYNAMO [94]
  • EMAN [94]
  • PHENIX [73]
  • MATLAB [57]
  • UCSF CHIMERA [51]
  • SPIDER [44]
  • SPHIRE [43]
  • PEET [42]
  • CRYOLO [37]
  • CRYODRGN [35]
  • XMIPP [35]
  • JSPR [34]
  • CTFFIND3 [32]
  • AV3 [30]
  • ISOLDE [30]
  • APPION [27]
  • AUTO3DEM [26]
  • IMAGIC [23]
  • NOVACTF [22]
  • SPARX [20]
  • SUBTOM [20]
  • CTFTILT [19]
  • PYTOM [18]
  • SCIPION [17]
  • TOM TOOLBOX [17]
  • AIMLESS [16]
  • ETOMO [16]
  • J3DR [16]
  • JALIGN [16]
  • SIMPLE [16]
  • CTFPHASEFLIP [15]
  • TOMO3D [15]
  • CTFFIND4 [14]
  • MOLREP [14]
  • POINTLESS [14]
  • TOM [14]
  • EMCLARITY [13]
  • FREALIX [11]
  • EMREADY [10]
  • M [9]
  • BSOFT [8]
  • EMIRA [8]
  • AMIRA [7]
  • CTFIND3 [7]
  • EPU [5]
  • REFMAC [5]
  • IMOD/PEET [4]
  • MRA/MSA [4]
  • SPRING [4]
  • CTFFIND3, LABEL AND SPIDER [3]
  • E2CTF.PY [3]
  • EMAN1 [3]
  • IHRSR [3]
  • PHASER [3]
  • 3DMOD [2]
  • E2HELIXBOXER [2]
  • GCTF/RELION [2]
  • MOTIONCORR2 [2]
  • MPSA [2]
  • NAMD [2]
  • SCALEPACK [2]
  • SHELXD [2]
  • SPARX/EMAN2 [2]
  • XSCALE [2]
  • ACE [1]
  • AUTO [1]
  • AUTO3DEM PO2R [1]
  • AUTO3DEM PPFT [1]
  • CCP4 PACKAGE [1]
  • CFTFIND [1]
  • CRYOSPAR [1]
  • E2HELIXBOXER.PY [1]
  • ELITE3D [1]
  • FEI TOMOGRAPHY [1]
  • FREALIGNX [1]
  • GAUTOMATCH [1]
  • I3 [1]
  • IHRSH [1]
  • IMIRS [1]
  • JSUBTOMO [1]
  • LEGINON [1]
  • MDFF [1]
  • MRC IMAGE PROCESSING PACKAGE [1]
  • REION [1]
  • RELION2 [1]
  • ROSETTA [1]
  • SEGREFINETHREED [1]

Microscope

  • FEI TITAN KRIOS [7354]
  • TFS KRIOS [4077]
  • FEI TALOS ARCTICA [852]
  • TFS GLACIOS [507]
  • JEOL CRYO ARM 300 [278]
  • FEI TECNAI F20 [177]
  • FEI POLARA 300 [163]
  • FEI TECNAI SPIRIT [162]
  • FEI TITAN [125]
  • ZEISS LIBRA120PLUS [108]
  • TFS TALOS [95]
  • JEOL CRYO ARM 200 [65]
  • FEI TECNAI 20 [64]
  • FEI TECNAI ARCTICA [60]
  • FEI TECNAI F30 [54]
  • FEI/PHILIPS EM420 [46]
  • FEI TECNAI 12 [29]
  • JEOL 3200FSC [24]
  • TFS TALOS F200C [23]
  • JEOL 2200FS [11]
  • JEOL 2100 [10]
  • FEI/PHILIPS CM200FEG [8]
  • JEOL 3200FS [8]
  • JEOL 2100F [7]
  • TFS TITAN THEMIS [6]
  • TFS TALOS L120C [5]
  • JEOL 1230 [4]
  • JEOL 2200FSC [4]
  • JEOL 1400 [3]
  • FEI/PHILIPS CM120T [2]
  • JEOL 100CX [2]
  • JEOL 2010F [2]
  • JEOL 3000SFF [2]
  • FEI MORGAGNI [1]
  • FEI/PHILIPS CM12 [1]
  • SHUIMU TOTEM 300S [1]

Electron Source

  • FIELD EMISSION GUN [13873]
  • LAB6 [399]
  • OTHER [43]
  • TUNGSTEN HAIRPIN [14]

Film or detector model

  • GATAN K3 6K X 4K [3543]
  • GATAN K3 BIOQUANTUM 6K X 4K [3474]
  • GATAN K2 SUMMIT 4K X 4K [2696]
  • FEI FALCON IV 4K X 4K [1391]
  • FEI FALCON III 4K X 4K [874]
  • TFS FALCON 4I 4K X 4K [622]
  • FEI FALCON II 4K X 4K [386]
  • GATAN K2 QUANTUM 4K X 4K [381]
  • GATAN ULTRASCAN 4000 4K X 4K [223]
  • TVIPS TEMCAM-F416 4K X 4K [222]
  • GATAN K3 BIOCONTINUUM 6K X 4K [198]
  • OTHER [95]
  • FEI CETA 4K X 4K [49]
  • FEI EAGLE 4K X 4K [46]
  • GATAN K2 BASE 4K X 4K [40]
  • DIRECT ELECTRON DE-20 5K X 3K [33]
  • FEI FALCON I 4K X 4K [13]
  • GATAN ULTRASCAN 1000 2K X 2K [13]
  • TVIPS TEMCAM-F415 4K X 4K [11]
  • DIRECT ELECTRON DE-64 8K X 8K [10]
  • FEI EAGLE 2K X 2K [9]
  • GATAN K2 IS 4K X 4K [9]
  • KODAK SO-163 FILM [9]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • DIRECT ELECTRON DE-16 4K X 4K [5]
  • GATAN MULTISCAN [5]
  • DIRECT ELECTRON APOLLO 4K X 4K [4]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • GATAN ALPINE 2.3K X 3.2K [2]
  • GATAN ORIUS SC1000 4K X 2.7K [1]
  • KODAK 4489 FILM [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • UniProt [9057]
  • PDB [8404]
  • AlphaFold DB [8032]
  • PDBe-Kb [7706]
  • InterPro [6571]
  • Gene Ontology [6515]
  • Pfam [6077]
  • ChEBI [5374]
  • ChEMBL [4837]
  • DrugBank [4386]
  • Complex Portal [2743]
  • EMPIAR [1940]
  • SCOP2 [174]
  • CATH [163]