Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
author:"Zhuang Y"

Filter By

Current Database

  • EMDB [93]

Current status

  • REL [93]

Sample type

  • Complex [91]
  • Protein [91]
  • Ligand [70]
  • Cellular component [2]

Organism

  • Homo sapiens [75]
  • Synthetic construct [28]
  • Mus musculus [27]
  • Bos taurus [22]
  • Rattus norvegicus [19]
  • Lama glama [9]
  • Desulfofustis sp. pb-srb1 [6]
  • (no species) [4]
  • Endosymbiont of tevnia jerichonana [4]
  • Gloeobacter violaceus [3]
  • Gloeobacter violaceus [3]
  • (no species) [3]
  • Staphylococcus aureus [1]
  • Streptococcus sp. group g [1]
  • Escherichia coli [1]
  • Conus textile [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • (no species) [1]

EM Method

  • Single-particle [93]

Resolution

  • ≥ 2Å and < 3Å [36]
  • ≥ 3Å and < 4Å [50]
  • ≥ 4Å and < 5Å [4]

Model molecular weight

  • 0-50 kDa [2]
  • 100-250 kDa [61]
  • 250-500 kDa [25]

Release Date

  • 2025 [14]
  • 2024 [10]
  • 2023 [23]
  • 2022 [15]
  • 2021 [17]
  • 2020 [10]
  • 2019 [4]

Author by name

  • Zhuang Y [93]
  • Xu HE [49]
  • Wang Y [42]
  • Howard RJ [36]
  • Lindahl E [36]
  • Jiang Y [33]
  • He X [26]
  • Zhang C [22]
  • Xu Y [21]
  • Cheng X [20]
  • Fan C [18]
  • Liu W [18]
  • Zhou XE [18]
  • Melcher K [17]
  • Roth BL [16]
  • Hibbs RE [15]
  • Noviello CM [15]
  • Teng J [15]
  • Xu P [14]
  • Yuan Q [14]
  • Zhang Y [14]
  • Liu Q [13]
  • Gharpure A [12]
  • Jiang H [12]
  • Walsh Jr Rm [12]
  • Huang XP [11]
  • Fan W [10]
  • Fang G [10]
  • Guo J [10]
  • Guo L [10]
  • Guo LL [10]
  • Guo S [10]
  • Liu Z [10]
  • Rong N [10]
  • Sun JP [10]
  • Wang L [10]
  • Xie X [10]
  • Yang F [10]
  • Yin W [10]
  • Yu X [10]
  • Zhang M [10]
  • Zhu K [10]
  • Cheng J [9]
  • Huang S [9]
  • Liu YF [9]
  • Mao C [9]
  • Wang MW [9]
  • Yang D [9]
  • Kim JJ [8]
  • Luo P [8]
  • Zhu S [8]
  • Han X [7]
  • Hu W [7]
  • Jiang J [7]
  • Kong Y [7]
  • Li H [7]
  • Li Q [7]
  • Lian S [7]
  • Liberles SD [7]
  • Liu S [7]
  • Lu Y [7]
  • Rong NK [7]
  • Wu K [7]
  • Xia M [7]
  • Xu YF [7]
  • Zhang L [7]
  • Zhang MH [7]
  • Zhang T [7]
  • Zheng Y [7]
  • Carroni M [6]
  • Chen H [6]
  • Chen X [6]
  • Forsberg BO [6]
  • He B [6]
  • Jiang X [6]
  • Krumm B [6]
  • Liu H [6]
  • Liu J [6]
  • Liu M [6]
  • Lycksell M [6]
  • Rao Q [6]
  • Rovsnik U [6]
  • Shen J [6]
  • Wang M [6]
  • Wang X [6]
  • Yang J [6]
  • Yvonnesdotter L [6]
  • Zhou Q [6]
  • Chen F [5]
  • Cowgill J [5]
  • Diberto JF [5]
  • Erik L [5]
  • Haloi N [5]
  • Jain MK [5]
  • John C [5]
  • Krumm BE [5]
  • Liu Y [5]
  • Rebecca JH [5]
  • Schmitz GP [5]
  • Tobiasson V [5]

Author by ORCID

  • Zhuang Y [37]
  • Xu HE [33]
  • Howard RJ [21]
  • Melcher K [17]
  • He X [15]
  • Zhuang Y [15]
  • Lindahl E [14]
  • Gharpure A [12]
  • Walsh Jr Rm [12]
  • Roth BL [11]
  • Hibbs RE [11]
  • Yang F [10]
  • Yu X [10]
  • Sun JP [10]
  • Mao C [9]
  • Xu Y [9]
  • Cheng X [9]
  • Zhang C [8]
  • Xu Y [7]
  • Jiang Y [7]
  • Liberles SD [7]
  • Zhang L [7]
  • Yin W [7]
  • Li Q [7]
  • Zhang Y [7]
  • Rovsnik U [6]
  • Wang Y [6]
  • Forsberg BO [6]
  • Chen H [6]
  • Krumm BE [5]
  • Tobiasson V [5]
  • Liu YF [5]
  • Xu P [5]
  • Wang L [4]
  • Zaveri NT [4]
  • Sun D [4]
  • Xie X [4]
  • Cheng X [4]
  • Fan W [4]
  • Wang Y [4]
  • Chen L [4]
  • Kang D [3]
  • Liu Z [3]
  • Eric Xu H [3]
  • Xue C [3]
  • Fan C [3]
  • Tie L [3]
  • Wang C [3]
  • Krumm B [2]
  • Zhang Q [2]
  • Liu Y [2]
  • Jiang H [2]
  • Feng Z [1]
  • Eric Xu H [1]
  • Lambert NA [1]
  • Chen M [1]
  • Jang W [1]
  • Meng X [1]
  • Xu TH [1]
  • Fan H [1]
  • Kang Y [1]
  • Zhao G [1]
  • Wang L [1]

Journal

  • CELL [16]
  • NATURE [15]
  • NAT COMMUN [13]
  • NEURON [11]
  • CELL RES [7]
  • J STRUCT BIOL X [6]
  • LIFE SCI ALLIANCE [6]
  • NAT CHEM BIOL [6]
  • BR.J.PHARMACOL. [4]
  • PNAS [4]
  • BIORXIV [2]
  • CELL DISCOV [2]
  • TO BE PUBLISHED [2]
  • CELL REP [1]

Software

  • RELION [19]
  • CRYOSPARC [3]
  • CTFFIND [2]
  • GCTF [2]

Microscope

  • FEI TITAN KRIOS [86]
  • FEI TITAN [4]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [93]

Film or detector model

  • GATAN K3 6K X 4K [50]
  • GATAN K3 BIOQUANTUM 6K X 4K [20]
  • GATAN K2 SUMMIT 4K X 4K [18]
  • GATAN K2 BASE 4K X 4K [5]

External links

  • AlphaFold DB [88]
  • PDB [88]
  • UniProt [88]
  • Gene Ontology [82]
  • PDBe-Kb [82]
  • Pfam [82]
  • InterPro [80]
  • ChEBI [65]
  • ChEMBL [64]
  • DrugBank [60]
  • Complex Portal [13]
  • EMPIAR [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 93. Page 1 of 10
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-39010
Download Map
3D View
positive allosteric modulator BMS986122 -bound mu-opioid receptor-Gi complex
Release date: Aug. 6, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8y72

Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

To Be Published

EMD-39011
Download Map
3D View
positive allosteric modulator MPAM-15 -bound mu-opioid receptor-Gi complex
Release date: Aug. 6, 2025
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8y73

Luo P, Xu Y, Wang Y, Zhuang Y, Xu HE

To Be Published

EMD-60525
Download Map
3D View
cryoEM structure of JR14a bound C3aR-BRIL-BAG2 complex
Release date: May 14, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8zwf
Q-score: 0.372

Luo P, Xin W, Guo S, Li X, Zhang Q, Xu Y, He X, Wang Y, Fan W, Yuan Q, Wu K, Hu W, Zhuang Y, Xu HE, Xie X

Cell Discov (2025) 11 pp. 7-7 [ DOI: doi:10.1038/s41421-024-00765-x Pubmed: 39788969 ]

EMD-60526
Download Map
3D View
cryoEM structure of JR14a bound C3aR-Gi complex
Release date: May 14, 2025
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8zwg
Q-score: 0.476

Luo P, Xin W, Guo S, Li X, Zhang Q, Xu Y, He X, Wang Y, Fan W, Yuan Q, Wu K, Hu W, Zhuang Y, Xu HE, Xie X

Cell Discov (2025) 11 pp. 7-7 [ DOI: doi:10.1038/s41421-024-00765-x Pubmed: 39788969 ]

EMD-19991
Download Map
3D View
3DFlex refinement of the CryoEM structure of DeCLIC nanodisc with 10mM EDTA in sym-like state
Release date: April 9, 2025
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9ev1
Q-score: 0.449

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

EMD-19993
Download Map
3D View
3DFlex refinement of the CryoEM structure of DeCLIC nanodisc with 10mM EDTA in asym state
Release date: April 9, 2025
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9ev7
Q-score: 0.448

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

EMD-19994
Download Map
3D View
Non-uniform refinement of the CryoEM structure of DeCLIC nanodisc with 10mM calcium
Release date: April 9, 2025
Resolution: 2.06 Å
EM Method: Single-particle
Fitted PDBs: 9ev8
Q-score: 0.448

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

EMD-19995
Download Map
3D View
Non-uniform refinement of the CryoEM structure of DeCLIC nanodisc with 10mM EDTA in asym state
Release date: April 9, 2025
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 9ev9
Q-score: 0.468

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

EMD-19996
Download Map
3D View
3DFlex refinement of the CryoEM structure of DeCLIC nanodisc with 10mM calcium
Release date: April 9, 2025
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 9eva
Q-score: 0.527

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

EMD-19997
Download Map
3D View
Non-uniform refinement of the CryoEM structure of DeCLIC nanodisc with 10mM EDTA in sym-like state
Release date: April 9, 2025
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9evb
Q-score: 0.435

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X (2025) 12 pp. 100139-100139 [ Pubmed: 41328424 DOI: doi:10.1016/j.yjsbx.2025.100139 ]

Sort by: Download
Showing 1 - 10 of 93. Page 1 of 10
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [93]

Current status

  • REL [93]

Sample type

  • Complex [91]
  • Protein [91]
  • Ligand [70]
  • Cellular component [2]

Organism

  • Homo sapiens [75]
  • Synthetic construct [28]
  • Mus musculus [27]
  • Bos taurus [22]
  • Rattus norvegicus [19]
  • Lama glama [9]
  • Desulfofustis sp. pb-srb1 [6]
  • (no species) [4]
  • Endosymbiont of tevnia jerichonana [4]
  • Gloeobacter violaceus [3]
  • Gloeobacter violaceus [3]
  • (no species) [3]
  • Staphylococcus aureus [1]
  • Streptococcus sp. group g [1]
  • Escherichia coli [1]
  • Conus textile [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • (no species) [1]

EM Method

  • Single-particle [93]

Resolution

  • ≥ 2Å and < 3Å [36]
  • ≥ 3Å and < 4Å [50]
  • ≥ 4Å and < 5Å [4]

Model molecular weight

  • 0-50 kDa [2]
  • 100-250 kDa [61]
  • 250-500 kDa [25]

Release Date

  • 2025 [14]
  • 2024 [10]
  • 2023 [23]
  • 2022 [15]
  • 2021 [17]
  • 2020 [10]
  • 2019 [4]

Author by name

  • Zhuang Y [93]
  • Xu HE [49]
  • Wang Y [42]
  • Howard RJ [36]
  • Lindahl E [36]
  • Jiang Y [33]
  • He X [26]
  • Zhang C [22]
  • Xu Y [21]
  • Cheng X [20]
  • Fan C [18]
  • Liu W [18]
  • Zhou XE [18]
  • Melcher K [17]
  • Roth BL [16]
  • Hibbs RE [15]
  • Noviello CM [15]
  • Teng J [15]
  • Xu P [14]
  • Yuan Q [14]
  • Zhang Y [14]
  • Liu Q [13]
  • Gharpure A [12]
  • Jiang H [12]
  • Walsh Jr Rm [12]
  • Huang XP [11]
  • Fan W [10]
  • Fang G [10]
  • Guo J [10]
  • Guo L [10]
  • Guo LL [10]
  • Guo S [10]
  • Liu Z [10]
  • Rong N [10]
  • Sun JP [10]
  • Wang L [10]
  • Xie X [10]
  • Yang F [10]
  • Yin W [10]
  • Yu X [10]
  • Zhang M [10]
  • Zhu K [10]
  • Cheng J [9]
  • Huang S [9]
  • Liu YF [9]
  • Mao C [9]
  • Wang MW [9]
  • Yang D [9]
  • Kim JJ [8]
  • Luo P [8]
  • Zhu S [8]
  • Han X [7]
  • Hu W [7]
  • Jiang J [7]
  • Kong Y [7]
  • Li H [7]
  • Li Q [7]
  • Lian S [7]
  • Liberles SD [7]
  • Liu S [7]
  • Lu Y [7]
  • Rong NK [7]
  • Wu K [7]
  • Xia M [7]
  • Xu YF [7]
  • Zhang L [7]
  • Zhang MH [7]
  • Zhang T [7]
  • Zheng Y [7]
  • Carroni M [6]
  • Chen H [6]
  • Chen X [6]
  • Forsberg BO [6]
  • He B [6]
  • Jiang X [6]
  • Krumm B [6]
  • Liu H [6]
  • Liu J [6]
  • Liu M [6]
  • Lycksell M [6]
  • Rao Q [6]
  • Rovsnik U [6]
  • Shen J [6]
  • Wang M [6]
  • Wang X [6]
  • Yang J [6]
  • Yvonnesdotter L [6]
  • Zhou Q [6]
  • Chen F [5]
  • Cowgill J [5]
  • Diberto JF [5]
  • Erik L [5]
  • Haloi N [5]
  • Jain MK [5]
  • John C [5]
  • Krumm BE [5]
  • Liu Y [5]
  • Rebecca JH [5]
  • Schmitz GP [5]
  • Tobiasson V [5]

Author by ORCID

  • Zhuang Y [37]
  • Xu HE [33]
  • Howard RJ [21]
  • Melcher K [17]
  • He X [15]
  • Zhuang Y [15]
  • Lindahl E [14]
  • Gharpure A [12]
  • Walsh Jr Rm [12]
  • Roth BL [11]
  • Hibbs RE [11]
  • Yang F [10]
  • Yu X [10]
  • Sun JP [10]
  • Mao C [9]
  • Xu Y [9]
  • Cheng X [9]
  • Zhang C [8]
  • Xu Y [7]
  • Jiang Y [7]
  • Liberles SD [7]
  • Zhang L [7]
  • Yin W [7]
  • Li Q [7]
  • Zhang Y [7]
  • Rovsnik U [6]
  • Wang Y [6]
  • Forsberg BO [6]
  • Chen H [6]
  • Krumm BE [5]
  • Tobiasson V [5]
  • Liu YF [5]
  • Xu P [5]
  • Wang L [4]
  • Zaveri NT [4]
  • Sun D [4]
  • Xie X [4]
  • Cheng X [4]
  • Fan W [4]
  • Wang Y [4]
  • Chen L [4]
  • Kang D [3]
  • Liu Z [3]
  • Eric Xu H [3]
  • Xue C [3]
  • Fan C [3]
  • Tie L [3]
  • Wang C [3]
  • Krumm B [2]
  • Zhang Q [2]
  • Liu Y [2]
  • Jiang H [2]
  • Feng Z [1]
  • Eric Xu H [1]
  • Lambert NA [1]
  • Chen M [1]
  • Jang W [1]
  • Meng X [1]
  • Xu TH [1]
  • Fan H [1]
  • Kang Y [1]
  • Zhao G [1]
  • Wang L [1]

Journal

  • CELL [16]
  • NATURE [15]
  • NAT COMMUN [13]
  • NEURON [11]
  • CELL RES [7]
  • J STRUCT BIOL X [6]
  • LIFE SCI ALLIANCE [6]
  • NAT CHEM BIOL [6]
  • BR.J.PHARMACOL. [4]
  • PNAS [4]
  • BIORXIV [2]
  • CELL DISCOV [2]
  • TO BE PUBLISHED [2]
  • CELL REP [1]

Software

  • RELION [19]
  • CRYOSPARC [3]
  • CTFFIND [2]
  • GCTF [2]

Microscope

  • FEI TITAN KRIOS [86]
  • FEI TITAN [4]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [93]

Film or detector model

  • GATAN K3 6K X 4K [50]
  • GATAN K3 BIOQUANTUM 6K X 4K [20]
  • GATAN K2 SUMMIT 4K X 4K [18]
  • GATAN K2 BASE 4K X 4K [5]

External links

  • AlphaFold DB [88]
  • PDB [88]
  • UniProt [88]
  • Gene Ontology [82]
  • PDBe-Kb [82]
  • Pfam [82]
  • InterPro [80]
  • ChEBI [65]
  • ChEMBL [64]
  • DrugBank [60]
  • Complex Portal [13]
  • EMPIAR [1]
  • SCOP2 [1]