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author:"Iwasaki S"

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Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Complex [34]
  • Protein [27]
  • Ligand [23]
  • RNA [23]

Organism

  • Homo sapiens [24]
  • Escherichia coli [7]
  • Hepacivirus hominis [6]
  • Triticum aestivum [5]
  • Sicilian phlebovirus [4]
  • Oryza sativa [4]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [34]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [15]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 500-1000 kDa [4]
  • 1-2 MDa [1]
  • 2-5 MDa [16]

Release Date

  • 2025 [9]
  • 2024 [5]
  • 2023 [10]
  • 2022 [1]
  • 2021 [5]
  • 2017 [4]

Author by name

  • Iwasaki S [34]
  • Ito T [17]
  • Mito M [17]
  • Shirouzu M [16]
  • Yokoyama T [16]
  • Nishimoto M [15]
  • Saito H [15]
  • Suzuki T [14]
  • Shichino Y [13]
  • Kashiwagi K [11]
  • Takahashi M [11]
  • Akichika S [10]
  • Irie T [10]
  • Ishibashi K [10]
  • Ishiguro K [10]
  • Ma D [10]
  • Matsuzawa I [10]
  • Mishima Y [10]
  • Sakaguchi Y [10]
  • Sakamoto A [10]
  • Wakabayashi K [10]
  • Zhao X [10]
  • Imami K [6]
  • Imataka H [6]
  • Iwasaki W [6]
  • Machida K [6]
  • Matsumoto A [6]
  • Fujiwara T [5]
  • Shigematsu H [5]
  • Sotta N [5]
  • Tanaka M [5]
  • Tsuda K [5]
  • Becker T [4]
  • Beckmann R [4]
  • Ikeuchi K [4]
  • Ikeuchi Y [4]
  • Inada T [4]
  • Ingolia N [4]
  • Ingolia NT [4]
  • Matsuo Y [4]
  • Osaki T [4]
  • Saeki Y [4]
  • Sato F [4]
  • Schmidt C [4]
  • Tanaka K [4]
  • Tsuchiya H [4]
  • Udagawa T [4]
  • Weber F [4]
  • Ando Y [3]
  • Chujo T [3]
  • Itoh Y [3]
  • Nagao A [3]
  • Nureki O [3]
  • Tani H [3]
  • Tomizawa K [3]
  • Tomuro K [3]
  • Wakigawa T [3]
  • Wei FY [3]
  • Yamashiro H [3]
  • Akakabe M [1]
  • Dohmae N [1]
  • Fujita T [1]
  • Kotoshiba K [1]
  • Matsuura-suzuki E [1]
  • Shimazu T [1]
  • Shinkai Y [1]
  • Sodeoka M [1]
  • Sohtome Y [1]
  • Taguchi H [1]

Author by ORCID

  • Iwasaki S [25]
  • Yokoyama T [16]
  • Ito T [11]
  • Zhao X [10]
  • Akichika S [10]
  • Ishibashi K [10]
  • Nishimoto M [9]
  • Sotta N [5]
  • Kashiwagi K [5]
  • Tanaka M [5]
  • Fujiwara T [5]
  • Shirouzu M [5]
  • Takahashi M [5]
  • Shigematsu H [5]
  • Osaki T [4]
  • Weber F [4]
  • Matsuo Y [4]
  • Shichino Y [4]
  • Ikeuchi Y [4]
  • Ingolia NT [4]
  • Schmidt C [4]
  • Sakamoto A [4]
  • Saeki Y [4]
  • Ikeuchi K [4]
  • Itoh Y [3]
  • Nureki O [3]
  • Ando Y [3]
  • Suzuki T [1]
  • Sodeoka M [1]
  • Matsuura-suzuki E [1]
  • Dohmae N [1]
  • Shinkai Y [1]
  • Taguchi H [1]
  • Sohtome Y [1]
  • Shimazu T [1]

Journal

  • CELL [10]
  • NAT COMMUN [8]
  • PNAS [6]
  • NAT CHEM BIOL [5]
  • TO BE PUBLISHED [3]
  • ELIFE [1]
  • RNA [1]

Software

  • RELION [15]

Microscope

  • FEI TITAN KRIOS [18]
  • TFS KRIOS [9]
  • FEI TECNAI ARCTICA [4]
  • JEOL CRYO ARM 300 [3]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [22]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [21]
  • Gene Ontology [21]
  • PDB [21]
  • PDBe-Kb [21]
  • Pfam [21]
  • UniProt [21]
  • InterPro [20]
  • ChEBI [17]
  • DrugBank [17]
  • ChEMBL [15]
  • Complex Portal [12]
Sort by: Download
Showing 1 - 10 of 34. Page 1 of 4
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EMD-62386
Download Map
3D View
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9kkf

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-62453
Download Map
3D View
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Release date: Dec. 3, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9kn5

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-62454
Download Map
3D View
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9kn6

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-62535
Download Map
3D View
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Release date: Dec. 3, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9krp

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-62671
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3D View
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome non-rotated state in complexed with eIF3
Release date: Dec. 3, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9kzu

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-62679
Download Map
3D View
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome rotated state in complexed with eIF3
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9kzx

Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PNAS (2025) [ DOI: doi:10.1073/pnas.2505538122 ]

EMD-64554
Composite map
Download Map
3D View
human mitoribosome trapped by retapamulin
Release date: Oct. 29, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9uwh

Wakigawa T, Mito M, Ando Y, Yamashiro H, Tomuro K, Tani H, Tomizawa K, Chujo T, Nagao A, Suzuki T, Nureki O, Wei FY, Shichino Y, Itoh Y, Suzuki T, Iwasaki S

To Be Published

EMD-64899
Download Map
3D View
human mitoirbosome trapped by retapamulin, global map
Release date: Oct. 29, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Wakigawa T, Mito M, Ando Y, Yamashiro H, Tomuro K, Tani H, Tomizawa K, Chujo T, Nagao A, Suzuki T, Nureki O, Wei FY, Shichino Y, Itoh Y, Suzuki T, Iwasaki S

To Be Published

EMD-64900
Download Map
3D View
human mitoirbosome trapped by retapamulin, focused map
Release date: Oct. 29, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Wakigawa T, Mito M, Ando Y, Yamashiro H, Tomuro K, Tani H, Tomizawa K, Chujo T, Nagao A, Suzuki T, Nureki O, Wei FY, Shichino Y, Itoh Y, Suzuki T, Iwasaki S

To Be Published

EMD-35634
Download Map
3D View
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Release date: Feb. 21, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ip8
Q-score: 0.579

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

Sort by: Download
Showing 1 - 10 of 34. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Complex [34]
  • Protein [27]
  • Ligand [23]
  • RNA [23]

Organism

  • Homo sapiens [24]
  • Escherichia coli [7]
  • Hepacivirus hominis [6]
  • Triticum aestivum [5]
  • Sicilian phlebovirus [4]
  • Oryza sativa [4]
  • Saccharomyces cerevisiae [4]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [34]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [15]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 500-1000 kDa [4]
  • 1-2 MDa [1]
  • 2-5 MDa [16]

Release Date

  • 2025 [9]
  • 2024 [5]
  • 2023 [10]
  • 2022 [1]
  • 2021 [5]
  • 2017 [4]

Author by name

  • Iwasaki S [34]
  • Ito T [17]
  • Mito M [17]
  • Shirouzu M [16]
  • Yokoyama T [16]
  • Nishimoto M [15]
  • Saito H [15]
  • Suzuki T [14]
  • Shichino Y [13]
  • Kashiwagi K [11]
  • Takahashi M [11]
  • Akichika S [10]
  • Irie T [10]
  • Ishibashi K [10]
  • Ishiguro K [10]
  • Ma D [10]
  • Matsuzawa I [10]
  • Mishima Y [10]
  • Sakaguchi Y [10]
  • Sakamoto A [10]
  • Wakabayashi K [10]
  • Zhao X [10]
  • Imami K [6]
  • Imataka H [6]
  • Iwasaki W [6]
  • Machida K [6]
  • Matsumoto A [6]
  • Fujiwara T [5]
  • Shigematsu H [5]
  • Sotta N [5]
  • Tanaka M [5]
  • Tsuda K [5]
  • Becker T [4]
  • Beckmann R [4]
  • Ikeuchi K [4]
  • Ikeuchi Y [4]
  • Inada T [4]
  • Ingolia N [4]
  • Ingolia NT [4]
  • Matsuo Y [4]
  • Osaki T [4]
  • Saeki Y [4]
  • Sato F [4]
  • Schmidt C [4]
  • Tanaka K [4]
  • Tsuchiya H [4]
  • Udagawa T [4]
  • Weber F [4]
  • Ando Y [3]
  • Chujo T [3]
  • Itoh Y [3]
  • Nagao A [3]
  • Nureki O [3]
  • Tani H [3]
  • Tomizawa K [3]
  • Tomuro K [3]
  • Wakigawa T [3]
  • Wei FY [3]
  • Yamashiro H [3]
  • Akakabe M [1]
  • Dohmae N [1]
  • Fujita T [1]
  • Kotoshiba K [1]
  • Matsuura-suzuki E [1]
  • Shimazu T [1]
  • Shinkai Y [1]
  • Sodeoka M [1]
  • Sohtome Y [1]
  • Taguchi H [1]

Author by ORCID

  • Iwasaki S [25]
  • Yokoyama T [16]
  • Ito T [11]
  • Zhao X [10]
  • Akichika S [10]
  • Ishibashi K [10]
  • Nishimoto M [9]
  • Sotta N [5]
  • Kashiwagi K [5]
  • Tanaka M [5]
  • Fujiwara T [5]
  • Shirouzu M [5]
  • Takahashi M [5]
  • Shigematsu H [5]
  • Osaki T [4]
  • Weber F [4]
  • Matsuo Y [4]
  • Shichino Y [4]
  • Ikeuchi Y [4]
  • Ingolia NT [4]
  • Schmidt C [4]
  • Sakamoto A [4]
  • Saeki Y [4]
  • Ikeuchi K [4]
  • Itoh Y [3]
  • Nureki O [3]
  • Ando Y [3]
  • Suzuki T [1]
  • Sodeoka M [1]
  • Matsuura-suzuki E [1]
  • Dohmae N [1]
  • Shinkai Y [1]
  • Taguchi H [1]
  • Sohtome Y [1]
  • Shimazu T [1]

Journal

  • CELL [10]
  • NAT COMMUN [8]
  • PNAS [6]
  • NAT CHEM BIOL [5]
  • TO BE PUBLISHED [3]
  • ELIFE [1]
  • RNA [1]

Software

  • RELION [15]

Microscope

  • FEI TITAN KRIOS [18]
  • TFS KRIOS [9]
  • FEI TECNAI ARCTICA [4]
  • JEOL CRYO ARM 300 [3]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [22]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [21]
  • Gene Ontology [21]
  • PDB [21]
  • PDBe-Kb [21]
  • Pfam [21]
  • UniProt [21]
  • InterPro [20]
  • ChEBI [17]
  • DrugBank [17]
  • ChEMBL [15]
  • Complex Portal [12]