Filter By
Current Database
- EMDB [21881]
- EMPIAR [565]
Current status
- REL [22446]
Sample type
- Complex [19467]
- Protein [17570]
- Ligand [11055]
- RNA [2512]
- DNA [1547]
- Virus [1060]
- Cellular component [997]
- Sample [280]
- Cell [225]
- Tissue [114]
- Other [88]
Organism
- Homo sapiens [8902]
- Synthetic construct [1379]
- Mus musculus [1277]
- Escherichia coli [1194]
- Saccharomyces cerevisiae [958]
- Severe acute respiratory syndrome coronavirus [935]
- Escherichia coli [582]
- Rattus norvegicus [514]
- Oryctolagus cuniculus [409]
- Human immunodeficiency virus 1 [363]
- Saccharomyces cerevisiae [339]
- Lama glama [330]
- Sus scrofa [325]
- Bos taurus [316]
- Xenopus laevis [250]
- Arabidopsis thaliana [225]
- Mycolicibacterium smegmatis [131]
- Leishmania tarentolae [128]
- Gallus gallus [127]
- Bacillus subtilis [123]
- Influenza a virus [113]
- Geobacillus stearothermophilus [113]
- Mycobacterium tuberculosis [111]
- Macaca mulatta [111]
- Drosophila melanogaster [109]
- Escherichia coli [103]
- Staphylococcus aureus [94]
- Pseudomonas aeruginosa [94]
- Danio rerio [90]
- Ovis aries [76]
- Chlamydomonas reinhardtii [73]
- Chaetomium thermophilum [73]
- Vicugna pacos [71]
- Pseudomonas aeruginosa [70]
- Chaetomium thermophilum [68]
- Caenorhabditis elegans [66]
- Trypanosoma brucei [65]
- Thermus thermophilus [64]
- Enterobacteria phage t4 [60]
- Mycobacterium tuberculosis [60]
- Plasmodium falciparum [55]
- Bacillus sp. (strain ps3) [54]
- Tetrahymena thermophila [49]
- Severe acute respiratory syndrome coronavirus [48]
- Lassa mammarenavirus [46]
- Schizosaccharomyces pombe [46]
- Parengyodontium album [46]
- Aequorea victoria [45]
- Clostridioides difficile [44]
- Bacillus subtilis [44]
- Mycoplasma pneumoniae [43]
- Saccharolobus solfataricus [41]
- Spinacia oleracea [41]
- Oryza sativa [39]
- Trypanosoma brucei [39]
- Vibrio cholerae [39]
- Plasmodium falciparum [38]
- Cricetulus griseus [37]
- Aquifex aeolicus [37]
- Escherichia coli [37]
- Macaca fascicularis [37]
- Legionella pneumophila [36]
- Saccharomyces cerevisiae [36]
- Torpedo marmorata [36]
- Amanita phalloides [35]
- Adeno-associated dependoparvovirus a [34]
- Orthobornavirus bornaense [34]
- Simian virus 40 [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Salmonella enterica [34]
- Escherichia virus t7 [33]
- Euglena gracilis [33]
- Dictyostelium discoideum [33]
- Pyrococcus furiosus [32]
- Anthocerotibacter panamensis [32]
- Klebsiella pneumoniae [32]
- Human herpesvirus 1 [31]
- Azotobacter vinelandii [31]
- Rous sarcoma virus [30]
- Mycolicibacterium smegmatis [29]
- Thermococcus profundus [29]
- Hepatitis b virus [28]
- Dengue virus [28]
- (no species) [28]
- Eastern equine encephalitis virus [27]
- Azotobacter vinelandii [27]
- Influenza a virus [27]
- Clostridium botulinum [26]
- Enterobacteria phage t4 [26]
- Salmonella enterica [26]
- Acetivibrio thermocellus [25]
- Listeria innocua [24]
- Pyrococcus furiosus [24]
- Dna molecule [24]
- Human immunodeficiency virus 1 [24]
- Escherichia coli [24]
- Escherichia coli [23]
- Strongylocentrotus purpuratus [23]
- Streptococcus thermophilus [22]
- Clostridium perfringens [22]
EM Method
- Single-particle [20420]
- Helical reconstruction [986]
- Subtomogram averaging [298]
- Electron Crystallography [95]
- Tomography [82]
Resolution
- < 2Å [257]
- ≥ 2Å and < 3Å [5964]
- ≥ 3Å and < 4Å [10659]
- ≥ 4Å and < 5Å [2326]
- ≥ 5Å and < 6Å [486]
- ≥ 6Å and < 8Å [825]
- ≥ 8Å and < 12Å [539]
- ≥ 12Å and < 16Å [167]
- ≥ 16Å and < 20Å [135]
- ≥ 20Å and < 30Å [294]
- ≥ 30Å [114]
Model molecular weight
- 0-50 kDa [309]
- 50-100 kDa [1055]
- 100-250 kDa [5140]
- 250-500 kDa [4361]
- 500-1000 kDa [2319]
- 1-2 MDa [1082]
- 2-5 MDa [1019]
- 5-10 MDa [281]
- > 10 MDa [221]
Release Date
- 2026 [2839]
- 2025 [5019]
- 2024 [4141]
- 2023 [2882]
- 2022 [2386]
- 2021 [1757]
- 2020 [1437]
- 2019 [890]
- 2018 [406]
- 2017 [257]
- 2016 [175]
- 2015 [62]
- 2014 [50]
- 2013 [36]
- 2012 [20]
- 2011 [22]
- 2010 [17]
- 2009 [13]
- 2007 [11]
- 2006 [18]
- 2005 [5]
- 2003 [1]
- 2002 [2]
Author by name
- Liu Y [484]
- Zhang Y [467]
- Li Y [458]
- Zhang X [457]
- Wang X [442]
- Wang Y [427]
- Ward AB [368]
- Gao Y [344]
- Wang J [343]
- Zhang Z [332]
- Zhang J [330]
- Li Z [323]
- Wang H [302]
- Zhang L [292]
- Li H [276]
- Li X [262]
- Liu S [256]
- Skiniotis G [253]
- Wang L [252]
- Zhao Y [247]
- Chen Y [240]
- Li S [232]
- Zhang S [227]
- Lyumkis D [222]
- Marks AR [219]
- Zhou ZH [215]
- Chen J [209]
- Li J [208]
- Papasergi-scott MM [207]
- Beckmann R [206]
- Chen X [204]
- Yuan Q [198]
- Miotto MC [197]
- Shi Y [192]
- Seven AB [189]
- Zhang H [189]
- Hu Y [188]
- Gmeiner P [186]
- He F [185]
- Xu Y [185]
- Yang Y [185]
- Wang Q [184]
- Klinge S [183]
- Liu X [183]
- Liu C [181]
- Kobilka BK [179]
- Xu C [178]
- Lee J [177]
- Wang Z [175]
- Liu Z [174]
- Panova O [174]
- Wang C [174]
- Li W [173]
- Liu J [172]
- Dridi H [171]
- Reiken S [171]
- Rubinstein JL [171]
- Weninger G [170]
- Liu L [169]
- Hilger D [165]
- Zhou J [163]
- Hildebrand PW [162]
- Zhou Y [162]
- Batebi H [160]
- Brown A [160]
- Casiraghi M [160]
- Eskici G [160]
- Maul L [160]
- Perez-hernandez G [160]
- Tchagou C [160]
- Wu M [158]
- Du J [157]
- Wang M [157]
- Zhu X [157]
- Zhu Y [157]
- Wang W [154]
- Wu J [154]
- Chen M [153]
- Chen Z [152]
- Zhang R [152]
- Cramer P [151]
- Williamson JR [151]
- Yang Z [151]
- Vanden Broeck A [150]
- Wang S [149]
- Raunser S [148]
- Zhou L [148]
- Wronska A [147]
- Berninghausen O [146]
- Cheng J [145]
- Huang J [145]
- Kwong PD [145]
- Zhang W [145]
- Han S [140]
- Zhao J [140]
- Zhang B [139]
- Dong X [138]
- Yang F [138]
- Li L [137]
- Sun J [137]
Author by ORCID
- Skiniotis G [196]
- Lyumkis D [172]
- Ward AB [161]
- Zhou ZH [154]
- Gao Y [154]
- Papasergi-scott MM [154]
- Miotto MC [152]
- He F [143]
- Brown A [141]
- Gmeiner P [139]
- Klinge S [139]
- Vanden Broeck A [134]
- Kobilka BK [133]
- Zhou L [127]
- Doran MH [127]
- Weninger G [125]
- Kishikawa JI [122]
- Hilger D [121]
- Beneke T [120]
- Batebi H [120]
- Wheeler RJ [120]
- Panova O [120]
- Perez-hernandez G [120]
- Hildebrand PW [120]
- Gluenz E [120]
- Fochler S [120]
- Beckmann R [117]
- Rubinstein JL [105]
- Hu Y [104]
- Wu M [104]
- Cottrell CA [102]
- Kwong PD [102]
- Raunser S [101]
- Williamson JR [101]
- Wronska A [101]
- Ho MC [100]
- Ranson NA [98]
- Yang CH [93]
- Hummer G [90]
- Plevka P [87]
- Fort C [85]
- Lee SY [84]
- Sazanov LA [83]
- Dridi H [82]
- Yokoyama K [82]
- Gao GF [81]
- Chiu W [81]
- Letts JA [81]
- Xia X [80]
- Scheres SHW [80]
- Fuzik T [79]
- Hite RK [79]
- Schief WR [78]
- Stahlberg H [78]
- Du J [78]
- Teng F [77]
- Baker D [77]
- Kotecha A [77]
- Lander GC [77]
- Venugopal H [76]
- Itoh Y [76]
- Hardwick SW [76]
- Stagno J [76]
- Aiyer S [75]
- Lu W [75]
- Amunts A [75]
- Torres JL [73]
- Aricescu AR [73]
- Yang F [72]
- Marks AR [72]
- Cramer P [71]
- Frost A [71]
- Hattne J [70]
- Gil-carton D [70]
- Arragain B [69]
- Carrique L [68]
- Hillen HS [68]
- Dutzler R [68]
- Paulino C [66]
- Zhou R [66]
- Borgnia MJ [66]
- Chirgadze DY [66]
- Cusack S [66]
- Chang YC [65]
- Malinauskas T [65]
- Goedert M [65]
- Zhou J [65]
- Tian H [65]
- Degenhardt MFS [65]
- Yang Y [65]
- Zhang S [65]
- Guo R [65]
- He Z [65]
- Han F [65]
- Li N [65]
- Kato T [64]
- Tsai MD [64]
- Tan YZ [63]
- Steyaert J [63]
- Wang H [63]
Journal
- NAT COMMUN [4751]
- TO BE PUBLISHED [2327]
- NATURE [1882]
- BIORXIV [1389]
- NAT STRUCT MOL BIOL [1367]
- PNAS [1171]
- SCIENCE [1122]
- SCI ADV [864]
- MOL CELL [792]
- ELIFE [703]
- CELL [659]
- STRUCTURE [483]
- CELL REP [437]
- NUCLEIC ACIDS RES [404]
- COMMUN BIOL [289]
- ACTA CRYSTALLOGR D STRUCT BIOL [258]
- NAT CHEM BIOL [229]
- CELL RES [216]
- J BIOL CHEM [208]
- EMBO J [203]
- J MOL BIOL [172]
- NAT MICROBIOL [159]
- PLOS PATHOG [157]
- J VIROL [145]
- J AM CHEM SOC [103]
- PROTEIN SCI [101]
- J STRUCT BIOL [100]
- CELL DISCOV [97]
- SCI REP [87]
- MBIO [84]
- PLOS BIOL [82]
- IMMUNITY [78]
- NAT METHODS [68]
- CELL HOST MICROBE [67]
- EMBO REP [67]
- NAT PLANTS [64]
- J STRUCT BIOL X [61]
- ISCIENCE [55]
- SCI TRANSL MED [55]
- NEURON [53]
- J CLIN INV [51]
- PROTEIN CELL [45]
- J MED CHEM [43]
- RES SQ [43]
- LIFE SCI ALLIANCE [42]
- INT J MOL SCI [40]
- FEBS J [39]
- VIRUSES [38]
- ACS NANO [34]
- PNAS NEXUS [34]
- EBIOMEDICINE [33]
- IUCRJ [30]
- COMMUN CHEM [29]
- PLOS ONE [29]
- BLOOD [28]
- J CELL BIOL [28]
- BIOCHEMISTRY [27]
- DEV CELL [27]
- SCI IMMUNOL [27]
- CURR BIOL [26]
- NPJ VACCINES [26]
- ACTA NEUROPATHOL [25]
- INT J BIOL MACROMOL [24]
- FEBS LETT [23]
- J.MOL.CELL.CARDIOL. [23]
- ADV SCI [22]
- ANGEW CHEM INT ED ENGL [22]
- ACS CHEM BIOL [21]
- ACS CENT SCI [19]
- FRONT MOL BIOSCI [19]
- BIOCHEM J [18]
- NAT CELL BIOL [18]
- NATL SCI REV [18]
- RNA [18]
- SIGNAL TRANSDUCT TARGET THER [18]
- NAT NEUROSCI [17]
- PLANT COMMUN. [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- GENES DEV [16]
- MOL PLANT [16]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
- NAT IMMUNOL [15]
- J.THROMB.HAEMOST. [14]
- PLANT CELL [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [13]
- FRONT IMMUNOL [13]
- MOL MICROBIOL [13]
- ACTA PHARMACOL.SIN. [12]
- BIOMOLECULES [12]
- CELL REP MED [12]
- J EXP MED [12]
- NAT CATAL [12]
- NAT CHEM [12]
- BIOPHYS J [11]
- CELL REP PHYS SCI [10]
- NAT CARDIOVASC RES [10]
- NAT NANOTECHNOL [10]
- NPJ VIRUSES [10]
- SMALL [10]
- CELL DEATH DIFFER. [9]
Software
- CRYOSPARC [8950]
- RELION [6630]
- CTFFIND [1175]
- GCTF [479]
- CISTEM [264]
- COOT [240]
- UCSF CHIMERAX [188]
- FREALIGN [163]
- PHENIX [163]
- WARP [137]
- SPIDER [94]
- EMAN2 [89]
- EMAN [85]
- SPHIRE [85]
- CRYOLO [76]
- IMOD [76]
- UCSF CHIMERA [68]
- DYNAMO [63]
- AIMLESS [43]
- CHIMERA [42]
- MATLAB [36]
- XMIPP [35]
- JSPR [34]
- ISOLDE [32]
- APPION [28]
- PEET [19]
- AV3 [18]
- CTFTILT [18]
- IMAGIC [17]
- PYTOM [17]
- SIMPLE [16]
- MOLREP [15]
- POINTLESS [15]
- AUTO3DEM [13]
- EMAN1 [11]
- SCIPION [11]
- EMCLARITY [10]
- FREALIX [10]
- REFMAC [10]
- TOPAZ [10]
- EMAN1, EMAN2 [9]
- EMAN1, FREALIGN [9]
- FOCUS [9]
- IHRSR [9]
- SPIDER, FREALIGN [9]
- TOM TOOLBOX [9]
- MPSA [7]
- SPARX [7]
- SPRING [7]
- SUBTOM [7]
- TOM [7]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- EMREADY [6]
- IMAGIC-5 [6]
- CTFFIND3 [5]
- CTFFIND4 [5]
- CTFPHASEFLIP [5]
- EMAN2, RELION1.2 [5]
- IMAGIC, SPIDER [5]
- IMIRS [5]
- J3DR [5]
- MPSA, EMAN, EMAN2 [5]
- PHASER [5]
- SITUS [5]
- UNBLUR, CTFFIND4, FREALIGN [5]
- CCP4 PACKAGE [4]
- JSPR, EMAN, EMAN2 [4]
- M [4]
- RSREF2.0 [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN [4]
- STOPGAP [4]
- XDS [4]
- XMIPP, FREALIGN [4]
- XSCALE [4]
- AMIRAFPM [3]
- CHIMERA, FLEX-EM [3]
- CHIMERA, FLEX-EM, MODELLER, TEMPY [3]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMAN2/SPARX [3]
- EMPFT, POR, P3DR [3]
- IMAGIC-5, SPIDER [3]
- JALIGN [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- MOTIONCORR2 [3]
- NAMD [3]
- NOVACTF [3]
- PFT EM3DR [3]
- SITUS,CHIMERA [3]
- CHIMERA, COOT [2]
- CHIMERA, FLEXEM [2]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- CRYOS [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DEEPEMHANCER [2]
- EM3DR2, P3DR [2]
- EMAN, EMAN2 [2]
- EMAN, SPIDER [2]
- EMBL-ICOS, MRC [2]
Microscope
- FEI TITAN KRIOS [11903]
- TFS KRIOS [6297]
- FEI TALOS ARCTICA [1083]
- TFS GLACIOS [902]
- JEOL CRYO ARM 300 [303]
- FEI POLARA 300 [288]
- FEI TECNAI F20 [194]
- FEI TITAN [151]
- FEI TECNAI ARCTICA [130]
- FEI TECNAI F30 [109]
- TFS TALOS [99]
- FEI TECNAI SPIRIT [81]
- FEI TECNAI 20 [58]
- JEOL CRYO ARM 200 [42]
- JEOL 3200FSC [38]
- FEI TECNAI 12 [37]
- FEI/PHILIPS CM300FEG/T [20]
- FEI/PHILIPS CM200FEG [16]
- JEOL 2100F [15]
- JEOL 2010F [14]
- JEOL 1230 [10]
- JEOL 1400/HR YPS FEG [10]
- FEI/PHILIPS EM420 [9]
- JEOL 2200FS [9]
- JEOL 3200FS [8]
- TFS TALOS F200C [8]
- TFS TITAN THEMIS [8]
- TFS TALOS L120C [7]
- JEOL 1400 [5]
- FEI MORGAGNI [4]
- FEI/PHILIPS CM120T [4]
- JEOL 2100 [4]
- JEOL 2200FSC [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS CM200T [3]
- FEI/PHILIPS CM300FEG/HE [3]
- JEOL 3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM12 [1]
- HITACHI H-9500SD [1]
- JEOL 1200EX [1]
- JEOL 1200EXII [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
- SHUIMU TOTEM 300S [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [21588]
- LAB6 [189]
- OTHER [87]
- TUNGSTEN HAIRPIN [17]
Film or detector model
- GATAN K3 6K X 4K [6120]
- GATAN K3 BIOQUANTUM 6K X 4K [5228]
- GATAN K2 SUMMIT 4K X 4K [3883]
- FEI FALCON IV 4K X 4K [2633]
- FEI FALCON III 4K X 4K [1400]
- TFS FALCON 4I 4K X 4K [675]
- GATAN K2 QUANTUM 4K X 4K [612]
- FEI FALCON II 4K X 4K [338]
- GATAN K3 BIOCONTINUUM 6K X 4K [250]
- GATAN ULTRASCAN 4000 4K X 4K [121]
- KODAK SO-163 FILM [92]
- OTHER [85]
- FEI CETA 4K X 4K [72]
- FEI EAGLE 4K X 4K [63]
- TVIPS TEMCAM-F416 4K X 4K [60]
- GATAN K2 BASE 4K X 4K [55]
- GATAN K2 4K X 4K [35]
- DIRECT ELECTRON DE-20 5K X 3K [25]
- FEI EAGLE 2K X 2K [25]
- DIRECT ELECTRON DE-64 8K X 8K [18]
- FEI FALCON I 4K X 4K [16]
- DIRECT ELECTRON APOLLO 4K X 4K [13]
- GATAN ULTRASCAN 1000 2K X 2K [12]
- GENERIC GATAN 4K X 4K [11]
- TVIPS TEMCAM-F415 4K X 4K [11]
- DECTRIS SINGLA 1K X 1K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN K2 IS 4K X 4K [8]
- GENERIC CCD [5]
- TVIPS TEMCAM-F816 8K X 8K [5]
- DIRECT ELECTRON DE-16 4K X 4K [4]
- TVIPS TEMCAM-F224 2K X 2K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- GATAN ALPINE 2.3K X 3.2K [3]
- KODAK 4489 FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC TVIPS [2]
- GENERIC TVIPS 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- GATAN MULTISCAN [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN 2K X 2K [1]
EMPIAR Experiment type
- EMDB [517]
- FIB-SEM [23]
- CLEM [8]
- SBF-SEM [8]
- EXCEPTION [6]
- SSET [3]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [467]
- MICROGRAPHS - SINGLE FRAME [143]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [46]
- TILT SERIES [24]
- RECONSTRUCTED VOLUMES [19]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [10]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [5]
- SUBTOMOGRAMS [2]
- MODEL [1]
- STITCHED MAPS [1]
External links
- PDB [21139]
- UniProt [16120]
- PDBe-Kb [14980]
- AlphaFold DB [14588]
- InterPro [13196]
- Gene Ontology [12530]
- Pfam [11642]
- ChEBI [9948]
- ChEMBL [9001]
- DrugBank [8170]
- Complex Portal [4688]
- EMPIAR [2510]
- EMDB [516]
- SCOP2 [282]
- CATH [168]
- BioImage Archive [8]
Resolution: 2.88 Å
EM Method: Single-particle
Bugai A, Hohmann U, Lorenzo A, Graf M, Fin L, Rouviere JO, Tirian L, Dou Y, Le Rest M, Polak P, Johnsen D, Jakobsen L, Andersen JS, Brennecke J, Plaschka C, Jensen TH
Nature (2026) [ Pubmed: 42310446 DOI: doi:10.1038/s41586-026-10650-0 ]
Resolution: 2.62 Å
EM Method: Single-particle
Bugai A, Hohmann U, Lorenzo A, Graf M, Fin L, Rouviere JO, Tirian L, Dou Y, Le Rest M, Polak P, Johnsen D, Jakobsen L, Andersen JS, Brennecke J, Plaschka C, Jensen TH
Nature (2026) [ Pubmed: 42310446 DOI: doi:10.1038/s41586-026-10650-0 ]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9s7s
Q-score: 0.32
Weckener M, Le Bas A, Ward PN, Naismith JH
To Be Published
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9s8l
Q-score: 0.091
Weckener M, Le Bas A, Ward PN, Naismith JH
To Be Published
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 9t5x
Q-score: 0.453
Busch M, Rosales-Hernandez C, Kamel M, Schaumkessel Y, van der Sluis E, Berninghausen O, Becker T, Beckmann R, Kedrov A
To Be Published
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9tfv
Q-score: 0.449
O'Malley N, Nasrallah C, Churchill A, Bertrand J, Faust B, Wallace BA
To Be Published
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9tg3
Q-score: 0.401
O'Malley N, Nasrallah C, Churchill A, Bertrand J, Faust B, Wallace BA
To Be Published
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9tg6
Q-score: 0.485
O'Malley N, Nasrallah C, Faust B, Wallace B
To Be Published
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9tpa
Q-score: 0.471
Hitchman CJ, Lia A, Chiritoiu GN, Munteanu CVA, Ortigosa JR, Ghenea S, Savva C, Wada I, De Benedictis M, Tax G, Bayo Y, Crescioli I, Alonzi DL, Quigley A, Modenutti CP, Petrescu SM, Santino A, Gooptu B, Hosokawa N, Roversi P
bioRxiv (2025) [ DOI: doi:10.1101/2025.01.29.635535 ]
Resolution: 3.1 Å
EM Method: Single-particle
Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J
Nat Commun (2026) 17 pp. 5564- [ DOI: doi:10.1038/s41467-026-74700-x ]
Filter By
Current Database
- EMDB [21881]
- EMPIAR [565]
Current status
- REL [22446]
Sample type
- Complex [19467]
- Protein [17570]
- Ligand [11055]
- RNA [2512]
- DNA [1547]
- Virus [1060]
- Cellular component [997]
- Sample [280]
- Cell [225]
- Tissue [114]
- Other [88]
Organism
- Homo sapiens [8902]
- Synthetic construct [1379]
- Mus musculus [1277]
- Escherichia coli [1194]
- Saccharomyces cerevisiae [958]
- Severe acute respiratory syndrome coronavirus [935]
- Escherichia coli [582]
- Rattus norvegicus [514]
- Oryctolagus cuniculus [409]
- Human immunodeficiency virus 1 [363]
- Saccharomyces cerevisiae [339]
- Lama glama [330]
- Sus scrofa [325]
- Bos taurus [316]
- Xenopus laevis [250]
- Arabidopsis thaliana [225]
- Mycolicibacterium smegmatis [131]
- Leishmania tarentolae [128]
- Gallus gallus [127]
- Bacillus subtilis [123]
- Influenza a virus [113]
- Geobacillus stearothermophilus [113]
- Mycobacterium tuberculosis [111]
- Macaca mulatta [111]
- Drosophila melanogaster [109]
- Escherichia coli [103]
- Staphylococcus aureus [94]
- Pseudomonas aeruginosa [94]
- Danio rerio [90]
- Ovis aries [76]
- Chlamydomonas reinhardtii [73]
- Chaetomium thermophilum [73]
- Vicugna pacos [71]
- Pseudomonas aeruginosa [70]
- Chaetomium thermophilum [68]
- Caenorhabditis elegans [66]
- Trypanosoma brucei [65]
- Thermus thermophilus [64]
- Enterobacteria phage t4 [60]
- Mycobacterium tuberculosis [60]
- Plasmodium falciparum [55]
- Bacillus sp. (strain ps3) [54]
- Tetrahymena thermophila [49]
- Severe acute respiratory syndrome coronavirus [48]
- Lassa mammarenavirus [46]
- Schizosaccharomyces pombe [46]
- Parengyodontium album [46]
- Aequorea victoria [45]
- Clostridioides difficile [44]
- Bacillus subtilis [44]
- Mycoplasma pneumoniae [43]
- Saccharolobus solfataricus [41]
- Spinacia oleracea [41]
- Oryza sativa [39]
- Trypanosoma brucei [39]
- Vibrio cholerae [39]
- Plasmodium falciparum [38]
- Cricetulus griseus [37]
- Aquifex aeolicus [37]
- Escherichia coli [37]
- Macaca fascicularis [37]
- Legionella pneumophila [36]
- Saccharomyces cerevisiae [36]
- Torpedo marmorata [36]
- Amanita phalloides [35]
- Adeno-associated dependoparvovirus a [34]
- Orthobornavirus bornaense [34]
- Simian virus 40 [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Salmonella enterica [34]
- Escherichia virus t7 [33]
- Euglena gracilis [33]
- Dictyostelium discoideum [33]
- Pyrococcus furiosus [32]
- Anthocerotibacter panamensis [32]
- Klebsiella pneumoniae [32]
- Human herpesvirus 1 [31]
- Azotobacter vinelandii [31]
- Rous sarcoma virus [30]
- Mycolicibacterium smegmatis [29]
- Thermococcus profundus [29]
- Hepatitis b virus [28]
- Dengue virus [28]
- (no species) [28]
- Eastern equine encephalitis virus [27]
- Azotobacter vinelandii [27]
- Influenza a virus [27]
- Clostridium botulinum [26]
- Enterobacteria phage t4 [26]
- Salmonella enterica [26]
- Acetivibrio thermocellus [25]
- Listeria innocua [24]
- Pyrococcus furiosus [24]
- Dna molecule [24]
- Human immunodeficiency virus 1 [24]
- Escherichia coli [24]
- Escherichia coli [23]
- Strongylocentrotus purpuratus [23]
- Streptococcus thermophilus [22]
- Clostridium perfringens [22]
EM Method
- Single-particle [20420]
- Helical reconstruction [986]
- Subtomogram averaging [298]
- Electron Crystallography [95]
- Tomography [82]
Resolution
- < 2Å [257]
- ≥ 2Å and < 3Å [5964]
- ≥ 3Å and < 4Å [10659]
- ≥ 4Å and < 5Å [2326]
- ≥ 5Å and < 6Å [486]
- ≥ 6Å and < 8Å [825]
- ≥ 8Å and < 12Å [539]
- ≥ 12Å and < 16Å [167]
- ≥ 16Å and < 20Å [135]
- ≥ 20Å and < 30Å [294]
- ≥ 30Å [114]
Model molecular weight
- 0-50 kDa [309]
- 50-100 kDa [1055]
- 100-250 kDa [5140]
- 250-500 kDa [4361]
- 500-1000 kDa [2319]
- 1-2 MDa [1082]
- 2-5 MDa [1019]
- 5-10 MDa [281]
- > 10 MDa [221]
Release Date
- 2026 [2839]
- 2025 [5019]
- 2024 [4141]
- 2023 [2882]
- 2022 [2386]
- 2021 [1757]
- 2020 [1437]
- 2019 [890]
- 2018 [406]
- 2017 [257]
- 2016 [175]
- 2015 [62]
- 2014 [50]
- 2013 [36]
- 2012 [20]
- 2011 [22]
- 2010 [17]
- 2009 [13]
- 2007 [11]
- 2006 [18]
- 2005 [5]
- 2003 [1]
- 2002 [2]
Author by name
- Liu Y [484]
- Zhang Y [467]
- Li Y [458]
- Zhang X [457]
- Wang X [442]
- Wang Y [427]
- Ward AB [368]
- Gao Y [344]
- Wang J [343]
- Zhang Z [332]
- Zhang J [330]
- Li Z [323]
- Wang H [302]
- Zhang L [292]
- Li H [276]
- Li X [262]
- Liu S [256]
- Skiniotis G [253]
- Wang L [252]
- Zhao Y [247]
- Chen Y [240]
- Li S [232]
- Zhang S [227]
- Lyumkis D [222]
- Marks AR [219]
- Zhou ZH [215]
- Chen J [209]
- Li J [208]
- Papasergi-scott MM [207]
- Beckmann R [206]
- Chen X [204]
- Yuan Q [198]
- Miotto MC [197]
- Shi Y [192]
- Seven AB [189]
- Zhang H [189]
- Hu Y [188]
- Gmeiner P [186]
- He F [185]
- Xu Y [185]
- Yang Y [185]
- Wang Q [184]
- Klinge S [183]
- Liu X [183]
- Liu C [181]
- Kobilka BK [179]
- Xu C [178]
- Lee J [177]
- Wang Z [175]
- Liu Z [174]
- Panova O [174]
- Wang C [174]
- Li W [173]
- Liu J [172]
- Dridi H [171]
- Reiken S [171]
- Rubinstein JL [171]
- Weninger G [170]
- Liu L [169]
- Hilger D [165]
- Zhou J [163]
- Hildebrand PW [162]
- Zhou Y [162]
- Batebi H [160]
- Brown A [160]
- Casiraghi M [160]
- Eskici G [160]
- Maul L [160]
- Perez-hernandez G [160]
- Tchagou C [160]
- Wu M [158]
- Du J [157]
- Wang M [157]
- Zhu X [157]
- Zhu Y [157]
- Wang W [154]
- Wu J [154]
- Chen M [153]
- Chen Z [152]
- Zhang R [152]
- Cramer P [151]
- Williamson JR [151]
- Yang Z [151]
- Vanden Broeck A [150]
- Wang S [149]
- Raunser S [148]
- Zhou L [148]
- Wronska A [147]
- Berninghausen O [146]
- Cheng J [145]
- Huang J [145]
- Kwong PD [145]
- Zhang W [145]
- Han S [140]
- Zhao J [140]
- Zhang B [139]
- Dong X [138]
- Yang F [138]
- Li L [137]
- Sun J [137]
Author by ORCID
- Skiniotis G [196]
- Lyumkis D [172]
- Ward AB [161]
- Zhou ZH [154]
- Gao Y [154]
- Papasergi-scott MM [154]
- Miotto MC [152]
- He F [143]
- Brown A [141]
- Gmeiner P [139]
- Klinge S [139]
- Vanden Broeck A [134]
- Kobilka BK [133]
- Zhou L [127]
- Doran MH [127]
- Weninger G [125]
- Kishikawa JI [122]
- Hilger D [121]
- Beneke T [120]
- Batebi H [120]
- Wheeler RJ [120]
- Panova O [120]
- Perez-hernandez G [120]
- Hildebrand PW [120]
- Gluenz E [120]
- Fochler S [120]
- Beckmann R [117]
- Rubinstein JL [105]
- Hu Y [104]
- Wu M [104]
- Cottrell CA [102]
- Kwong PD [102]
- Raunser S [101]
- Williamson JR [101]
- Wronska A [101]
- Ho MC [100]
- Ranson NA [98]
- Yang CH [93]
- Hummer G [90]
- Plevka P [87]
- Fort C [85]
- Lee SY [84]
- Sazanov LA [83]
- Dridi H [82]
- Yokoyama K [82]
- Gao GF [81]
- Chiu W [81]
- Letts JA [81]
- Xia X [80]
- Scheres SHW [80]
- Fuzik T [79]
- Hite RK [79]
- Schief WR [78]
- Stahlberg H [78]
- Du J [78]
- Teng F [77]
- Baker D [77]
- Kotecha A [77]
- Lander GC [77]
- Venugopal H [76]
- Itoh Y [76]
- Hardwick SW [76]
- Stagno J [76]
- Aiyer S [75]
- Lu W [75]
- Amunts A [75]
- Torres JL [73]
- Aricescu AR [73]
- Yang F [72]
- Marks AR [72]
- Cramer P [71]
- Frost A [71]
- Hattne J [70]
- Gil-carton D [70]
- Arragain B [69]
- Carrique L [68]
- Hillen HS [68]
- Dutzler R [68]
- Paulino C [66]
- Zhou R [66]
- Borgnia MJ [66]
- Chirgadze DY [66]
- Cusack S [66]
- Chang YC [65]
- Malinauskas T [65]
- Goedert M [65]
- Zhou J [65]
- Tian H [65]
- Degenhardt MFS [65]
- Yang Y [65]
- Zhang S [65]
- Guo R [65]
- He Z [65]
- Han F [65]
- Li N [65]
- Kato T [64]
- Tsai MD [64]
- Tan YZ [63]
- Steyaert J [63]
- Wang H [63]
Journal
- NAT COMMUN [4751]
- TO BE PUBLISHED [2327]
- NATURE [1882]
- BIORXIV [1389]
- NAT STRUCT MOL BIOL [1367]
- PNAS [1171]
- SCIENCE [1122]
- SCI ADV [864]
- MOL CELL [792]
- ELIFE [703]
- CELL [659]
- STRUCTURE [483]
- CELL REP [437]
- NUCLEIC ACIDS RES [404]
- COMMUN BIOL [289]
- ACTA CRYSTALLOGR D STRUCT BIOL [258]
- NAT CHEM BIOL [229]
- CELL RES [216]
- J BIOL CHEM [208]
- EMBO J [203]
- J MOL BIOL [172]
- NAT MICROBIOL [159]
- PLOS PATHOG [157]
- J VIROL [145]
- J AM CHEM SOC [103]
- PROTEIN SCI [101]
- J STRUCT BIOL [100]
- CELL DISCOV [97]
- SCI REP [87]
- MBIO [84]
- PLOS BIOL [82]
- IMMUNITY [78]
- NAT METHODS [68]
- CELL HOST MICROBE [67]
- EMBO REP [67]
- NAT PLANTS [64]
- J STRUCT BIOL X [61]
- ISCIENCE [55]
- SCI TRANSL MED [55]
- NEURON [53]
- J CLIN INV [51]
- PROTEIN CELL [45]
- J MED CHEM [43]
- RES SQ [43]
- LIFE SCI ALLIANCE [42]
- INT J MOL SCI [40]
- FEBS J [39]
- VIRUSES [38]
- ACS NANO [34]
- PNAS NEXUS [34]
- EBIOMEDICINE [33]
- IUCRJ [30]
- COMMUN CHEM [29]
- PLOS ONE [29]
- BLOOD [28]
- J CELL BIOL [28]
- BIOCHEMISTRY [27]
- DEV CELL [27]
- SCI IMMUNOL [27]
- CURR BIOL [26]
- NPJ VACCINES [26]
- ACTA NEUROPATHOL [25]
- INT J BIOL MACROMOL [24]
- FEBS LETT [23]
- J.MOL.CELL.CARDIOL. [23]
- ADV SCI [22]
- ANGEW CHEM INT ED ENGL [22]
- ACS CHEM BIOL [21]
- ACS CENT SCI [19]
- FRONT MOL BIOSCI [19]
- BIOCHEM J [18]
- NAT CELL BIOL [18]
- NATL SCI REV [18]
- RNA [18]
- SIGNAL TRANSDUCT TARGET THER [18]
- NAT NEUROSCI [17]
- PLANT COMMUN. [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- GENES DEV [16]
- MOL PLANT [16]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
- NAT IMMUNOL [15]
- J.THROMB.HAEMOST. [14]
- PLANT CELL [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [13]
- FRONT IMMUNOL [13]
- MOL MICROBIOL [13]
- ACTA PHARMACOL.SIN. [12]
- BIOMOLECULES [12]
- CELL REP MED [12]
- J EXP MED [12]
- NAT CATAL [12]
- NAT CHEM [12]
- BIOPHYS J [11]
- CELL REP PHYS SCI [10]
- NAT CARDIOVASC RES [10]
- NAT NANOTECHNOL [10]
- NPJ VIRUSES [10]
- SMALL [10]
- CELL DEATH DIFFER. [9]
Software
- CRYOSPARC [8950]
- RELION [6630]
- CTFFIND [1175]
- GCTF [479]
- CISTEM [264]
- COOT [240]
- UCSF CHIMERAX [188]
- FREALIGN [163]
- PHENIX [163]
- WARP [137]
- SPIDER [94]
- EMAN2 [89]
- EMAN [85]
- SPHIRE [85]
- CRYOLO [76]
- IMOD [76]
- UCSF CHIMERA [68]
- DYNAMO [63]
- AIMLESS [43]
- CHIMERA [42]
- MATLAB [36]
- XMIPP [35]
- JSPR [34]
- ISOLDE [32]
- APPION [28]
- PEET [19]
- AV3 [18]
- CTFTILT [18]
- IMAGIC [17]
- PYTOM [17]
- SIMPLE [16]
- MOLREP [15]
- POINTLESS [15]
- AUTO3DEM [13]
- EMAN1 [11]
- SCIPION [11]
- EMCLARITY [10]
- FREALIX [10]
- REFMAC [10]
- TOPAZ [10]
- EMAN1, EMAN2 [9]
- EMAN1, FREALIGN [9]
- FOCUS [9]
- IHRSR [9]
- SPIDER, FREALIGN [9]
- TOM TOOLBOX [9]
- MPSA [7]
- SPARX [7]
- SPRING [7]
- SUBTOM [7]
- TOM [7]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- EMREADY [6]
- IMAGIC-5 [6]
- CTFFIND3 [5]
- CTFFIND4 [5]
- CTFPHASEFLIP [5]
- EMAN2, RELION1.2 [5]
- IMAGIC, SPIDER [5]
- IMIRS [5]
- J3DR [5]
- MPSA, EMAN, EMAN2 [5]
- PHASER [5]
- SITUS [5]
- UNBLUR, CTFFIND4, FREALIGN [5]
- CCP4 PACKAGE [4]
- JSPR, EMAN, EMAN2 [4]
- M [4]
- RSREF2.0 [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN [4]
- STOPGAP [4]
- XDS [4]
- XMIPP, FREALIGN [4]
- XSCALE [4]
- AMIRAFPM [3]
- CHIMERA, FLEX-EM [3]
- CHIMERA, FLEX-EM, MODELLER, TEMPY [3]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMAN2/SPARX [3]
- EMPFT, POR, P3DR [3]
- IMAGIC-5, SPIDER [3]
- JALIGN [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- MOTIONCORR2 [3]
- NAMD [3]
- NOVACTF [3]
- PFT EM3DR [3]
- SITUS,CHIMERA [3]
- CHIMERA, COOT [2]
- CHIMERA, FLEXEM [2]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- CRYOS [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DEEPEMHANCER [2]
- EM3DR2, P3DR [2]
- EMAN, EMAN2 [2]
- EMAN, SPIDER [2]
- EMBL-ICOS, MRC [2]
Microscope
- FEI TITAN KRIOS [11903]
- TFS KRIOS [6297]
- FEI TALOS ARCTICA [1083]
- TFS GLACIOS [902]
- JEOL CRYO ARM 300 [303]
- FEI POLARA 300 [288]
- FEI TECNAI F20 [194]
- FEI TITAN [151]
- FEI TECNAI ARCTICA [130]
- FEI TECNAI F30 [109]
- TFS TALOS [99]
- FEI TECNAI SPIRIT [81]
- FEI TECNAI 20 [58]
- JEOL CRYO ARM 200 [42]
- JEOL 3200FSC [38]
- FEI TECNAI 12 [37]
- FEI/PHILIPS CM300FEG/T [20]
- FEI/PHILIPS CM200FEG [16]
- JEOL 2100F [15]
- JEOL 2010F [14]
- JEOL 1230 [10]
- JEOL 1400/HR YPS FEG [10]
- FEI/PHILIPS EM420 [9]
- JEOL 2200FS [9]
- JEOL 3200FS [8]
- TFS TALOS F200C [8]
- TFS TITAN THEMIS [8]
- TFS TALOS L120C [7]
- JEOL 1400 [5]
- FEI MORGAGNI [4]
- FEI/PHILIPS CM120T [4]
- JEOL 2100 [4]
- JEOL 2200FSC [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS CM200T [3]
- FEI/PHILIPS CM300FEG/HE [3]
- JEOL 3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM12 [1]
- HITACHI H-9500SD [1]
- JEOL 1200EX [1]
- JEOL 1200EXII [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
- SHUIMU TOTEM 300S [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [21588]
- LAB6 [189]
- OTHER [87]
- TUNGSTEN HAIRPIN [17]
Film or detector model
- GATAN K3 6K X 4K [6120]
- GATAN K3 BIOQUANTUM 6K X 4K [5228]
- GATAN K2 SUMMIT 4K X 4K [3883]
- FEI FALCON IV 4K X 4K [2633]
- FEI FALCON III 4K X 4K [1400]
- TFS FALCON 4I 4K X 4K [675]
- GATAN K2 QUANTUM 4K X 4K [612]
- FEI FALCON II 4K X 4K [338]
- GATAN K3 BIOCONTINUUM 6K X 4K [250]
- GATAN ULTRASCAN 4000 4K X 4K [121]
- KODAK SO-163 FILM [92]
- OTHER [85]
- FEI CETA 4K X 4K [72]
- FEI EAGLE 4K X 4K [63]
- TVIPS TEMCAM-F416 4K X 4K [60]
- GATAN K2 BASE 4K X 4K [55]
- GATAN K2 4K X 4K [35]
- DIRECT ELECTRON DE-20 5K X 3K [25]
- FEI EAGLE 2K X 2K [25]
- DIRECT ELECTRON DE-64 8K X 8K [18]
- FEI FALCON I 4K X 4K [16]
- DIRECT ELECTRON APOLLO 4K X 4K [13]
- GATAN ULTRASCAN 1000 2K X 2K [12]
- GENERIC GATAN 4K X 4K [11]
- TVIPS TEMCAM-F415 4K X 4K [11]
- DECTRIS SINGLA 1K X 1K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN K2 IS 4K X 4K [8]
- GENERIC CCD [5]
- TVIPS TEMCAM-F816 8K X 8K [5]
- DIRECT ELECTRON DE-16 4K X 4K [4]
- TVIPS TEMCAM-F224 2K X 2K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- GATAN ALPINE 2.3K X 3.2K [3]
- KODAK 4489 FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC TVIPS [2]
- GENERIC TVIPS 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- GATAN MULTISCAN [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN 2K X 2K [1]
EMPIAR Experiment type
- EMDB [517]
- FIB-SEM [23]
- CLEM [8]
- SBF-SEM [8]
- EXCEPTION [6]
- SSET [3]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [467]
- MICROGRAPHS - SINGLE FRAME [143]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [46]
- TILT SERIES [24]
- RECONSTRUCTED VOLUMES [19]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [10]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [5]
- SUBTOMOGRAMS [2]
- MODEL [1]
- STITCHED MAPS [1]
External links
- PDB [21139]
- UniProt [16120]
- PDBe-Kb [14980]
- AlphaFold DB [14588]
- InterPro [13196]
- Gene Ontology [12530]
- Pfam [11642]
- ChEBI [9948]
- ChEMBL [9001]
- DrugBank [8170]
- Complex Portal [4688]
- EMPIAR [2510]
- EMDB [516]
- SCOP2 [282]
- CATH [168]
- BioImage Archive [8]
