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Filter By
Current Database
- EMDB [22725]
- EMPIAR [577]
Current status
- REL [23302]
Sample type
- Complex [20132]
- Protein [18123]
- Ligand [11364]
- RNA [2604]
- DNA [1619]
- Cellular component [1110]
- Virus [1102]
- Sample [280]
- Cell [240]
- Tissue [134]
- Other [91]
Organism
- Homo sapiens [9173]
- Synthetic construct [1432]
- Mus musculus [1308]
- Escherichia coli [1251]
- Saccharomyces cerevisiae [1002]
- Severe acute respiratory syndrome coronavirus [950]
- Escherichia coli [598]
- Rattus norvegicus [527]
- Oryctolagus cuniculus [478]
- Human immunodeficiency virus 1 [369]
- Saccharomyces cerevisiae [366]
- Lama glama [336]
- Sus scrofa [334]
- Bos taurus [313]
- Xenopus laevis [257]
- Arabidopsis thaliana [250]
- Mycolicibacterium smegmatis [131]
- Leishmania tarentolae [128]
- Gallus gallus [127]
- Bacillus subtilis [124]
- Mycobacterium tuberculosis [119]
- Drosophila melanogaster [115]
- Macaca mulatta [114]
- Influenza a virus [113]
- Geobacillus stearothermophilus [113]
- Escherichia coli [104]
- Pseudomonas aeruginosa [98]
- Staphylococcus aureus [95]
- Danio rerio [90]
- Pseudomonas aeruginosa [85]
- Vicugna pacos [76]
- Ovis aries [76]
- Chlamydomonas reinhardtii [74]
- Chaetomium thermophilum [73]
- Chaetomium thermophilum [71]
- Caenorhabditis elegans [71]
- Trypanosoma brucei [65]
- Thermus thermophilus [64]
- Mycobacterium tuberculosis [61]
- Enterobacteria phage t4 [60]
- Plasmodium falciparum [55]
- Bacillus sp. (strain ps3) [54]
- Severe acute respiratory syndrome coronavirus [51]
- Parengyodontium album [49]
- Tetrahymena thermophila [49]
- Bacillus subtilis [47]
- Lassa mammarenavirus [46]
- Schizosaccharomyces pombe [46]
- Aequorea victoria [45]
- Clostridioides difficile [44]
- Mycoplasma pneumoniae [43]
- Oryza sativa [42]
- Saccharolobus solfataricus [41]
- Spinacia oleracea [41]
- Vibrio cholerae [41]
- Trypanosoma brucei [39]
- Plasmodium falciparum [39]
- Macaca fascicularis [39]
- Dictyostelium discoideum [38]
- Escherichia coli [38]
- Cricetulus griseus [37]
- Aquifex aeolicus [37]
- Legionella pneumophila [37]
- Klebsiella pneumoniae [37]
- Saccharomyces cerevisiae [36]
- Torpedo marmorata [36]
- Mycolicibacterium smegmatis [35]
- Adeno-associated dependoparvovirus a [34]
- Orthobornavirus bornaense [34]
- Simian virus 40 [34]
- Amanita phalloides [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Salmonella enterica [34]
- Escherichia virus t7 [33]
- Euglena gracilis [33]
- Pyrococcus furiosus [32]
- Anthocerotibacter panamensis [32]
- Human herpesvirus 1 [31]
- Azotobacter vinelandii [31]
- Rous sarcoma virus [30]
- Thermococcus profundus [29]
- Dengue virus [28]
- (no species) [28]
- Eastern equine encephalitis virus [27]
- Azotobacter vinelandii [27]
- Escherichia coli [27]
- Influenza a virus [27]
- Salmonella enterica [27]
- Clostridium botulinum [26]
- Enterobacteria phage t4 [26]
- Dna molecule [26]
- Hepatitis b virus [25]
- Acetivibrio thermocellus [25]
- Listeria innocua [24]
- Pyrococcus furiosus [24]
- Human immunodeficiency virus 1 [24]
- Escherichia coli [24]
- Clostridium perfringens [23]
- Strongylocentrotus purpuratus [23]
- Unidentified adenovirus [22]
EM Method
- Single-particle [21170]
- Helical reconstruction [1044]
- Subtomogram averaging [331]
- Electron Crystallography [98]
- Tomography [82]
Resolution
- < 2Å [273]
- ≥ 2Å and < 3Å [6207]
- ≥ 3Å and < 4Å [11081]
- ≥ 4Å and < 5Å [2415]
- ≥ 5Å and < 6Å [505]
- ≥ 6Å and < 8Å [848]
- ≥ 8Å and < 12Å [548]
- ≥ 12Å and < 16Å [171]
- ≥ 16Å and < 20Å [143]
- ≥ 20Å and < 30Å [302]
- ≥ 30Å [117]
Model molecular weight
- 0-50 kDa [330]
- 50-100 kDa [1028]
- 100-250 kDa [4895]
- 250-500 kDa [4201]
- 500-1000 kDa [2175]
- 1-2 MDa [1054]
- 2-5 MDa [1314]
- 5-10 MDa [290]
- > 10 MDa [223]
Release Date
- 2026 [3797]
- 2025 [4944]
- 2024 [4149]
- 2023 [2886]
- 2022 [2378]
- 2021 [1733]
- 2020 [1430]
- 2019 [880]
- 2018 [413]
- 2017 [258]
- 2016 [177]
- 2015 [62]
- 2014 [50]
- 2013 [36]
- 2012 [20]
- 2011 [22]
- 2010 [17]
- 2009 [13]
- 2007 [11]
- 2006 [18]
- 2005 [5]
- 2003 [1]
- 2002 [2]
Author by name
- Liu Y [536]
- Li Y [485]
- Wang X [475]
- Zhang Y [461]
- Wang Y [446]
- Zhang X [445]
- Wang J [375]
- Ward AB [372]
- Li Z [356]
- Zhang Z [348]
- Gao Y [345]
- Zhang J [329]
- Wang H [318]
- Zhang L [309]
- Li X [300]
- Li H [295]
- Wang L [281]
- Liu S [277]
- Zhang S [273]
- Chen Y [252]
- Skiniotis G [252]
- Zhao Y [245]
- Li S [240]
- Li J [226]
- Lyumkis D [222]
- Marks AR [219]
- Zhou ZH [219]
- Beckmann R [212]
- Hu Y [209]
- Liu X [208]
- Chen X [207]
- Papasergi-scott MM [207]
- Shi Y [206]
- Yang Y [200]
- Liu C [199]
- Yuan Q [198]
- Liu J [197]
- Miotto MC [197]
- Lee J [192]
- Wang C [192]
- Chen J [191]
- Xu Y [191]
- Zhang H [190]
- Seven AB [189]
- Liu Z [188]
- Klinge S [186]
- Wang Q [186]
- He F [185]
- Gmeiner P [183]
- Wang W [183]
- Xu C [182]
- Zhou J [182]
- Kobilka BK [178]
- Li W [177]
- Wang Z [177]
- Zhu Y [177]
- Panova O [174]
- Wang M [174]
- Yang W [173]
- Cramer P [171]
- Dridi H [171]
- Reiken S [171]
- Rubinstein JL [171]
- Weninger G [170]
- Wu M [170]
- Huang J [169]
- Liu L [168]
- Hilger D [165]
- Wu J [163]
- Hildebrand PW [162]
- Kotecha A [162]
- Batebi H [160]
- Casiraghi M [160]
- Chen M [160]
- Eskici G [160]
- Maul L [160]
- Perez-hernandez G [160]
- Tchagou C [160]
- Brown A [159]
- Du J [159]
- Zhu X [158]
- Zhou Y [156]
- Yang Z [155]
- Cheng J [152]
- Williamson JR [151]
- Zhang R [151]
- Vanden Broeck A [150]
- Berninghausen O [149]
- Raunser S [149]
- Yang F [149]
- Zhou L [149]
- Wang S [148]
- Chen Z [147]
- Kwong PD [147]
- Wronska A [147]
- Zhang B [146]
- Li L [142]
- Li M [141]
- Han S [140]
- Zhang W [140]
Author by ORCID
- Skiniotis G [233]
- Papasergi-scott MM [194]
- Gao Y [193]
- He F [183]
- Ward AB [180]
- Gmeiner P [180]
- Lyumkis D [177]
- Kobilka BK [174]
- Zhou ZH [169]
- Klinge S [166]
- Hilger D [161]
- Batebi H [160]
- Panova O [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Brown A [157]
- Miotto MC [152]
- Vanden Broeck A [142]
- Raunser S [137]
- Beckmann R [131]
- Doran MH [128]
- Ho MC [127]
- Kwong PD [125]
- Weninger G [125]
- Beneke T [123]
- Wheeler RJ [120]
- Gluenz E [120]
- Fochler S [120]
- Cottrell CA [117]
- Fuzik T [112]
- Kotecha A [111]
- Wang CH [111]
- Kishikawa JI [111]
- Zhou L [108]
- Plevka P [108]
- Du J [107]
- Hummer G [102]
- Ranson NA [102]
- Williamson JR [101]
- Wronska A [101]
- Lu W [99]
- Rubinstein JL [98]
- Hu Y [96]
- Wu M [96]
- Gao GF [94]
- Yang CH [93]
- Carrique L [92]
- Schief WR [92]
- Chiu W [92]
- Hardwick SW [90]
- Baker D [89]
- Steyaert J [88]
- Yokoyama K [88]
- Aricescu AR [88]
- Venugopal H [87]
- Xia X [87]
- Henderson R [87]
- Lee SY [86]
- Fort C [85]
- Dridi H [82]
- Scheres SHW [82]
- Cheng J [82]
- Frost A [81]
- Cheng Y [80]
- Letts JA [80]
- Hite RK [80]
- Lander GC [80]
- Chirgadze DY [79]
- Degenhardt MFS [79]
- Edwards RJ [78]
- Malinauskas T [76]
- Stagno J [76]
- Aiyer S [75]
- Hattne J [75]
- Yang F [74]
- Stahlberg H [74]
- Pardon E [74]
- Martynowycz MW [74]
- Borgnia MJ [73]
- Torres JL [73]
- Mao Y [72]
- Marks AR [72]
- Hallberg BM [72]
- Gil-carton D [72]
- Itoh Y [71]
- Acharya P [71]
- Chang YC [71]
- Amunts A [71]
- Berninghausen O [71]
- Urlaub H [71]
- Dutzler R [70]
- Paulino C [69]
- Wang YX [69]
- Arragain B [68]
- Cramer P [67]
- Tan YZ [67]
- Thoms M [67]
- Lau B [67]
- Carnathan DG [67]
- Cusack S [66]
Journal
- NAT COMMUN [4975]
- TO BE PUBLISHED [2415]
- NATURE [1943]
- NAT STRUCT MOL BIOL [1445]
- BIORXIV [1401]
- PNAS [1210]
- SCIENCE [1123]
- SCI ADV [948]
- MOL CELL [850]
- ELIFE [710]
- CELL [675]
- STRUCTURE [487]
- NUCLEIC ACIDS RES [446]
- CELL REP [442]
- COMMUN BIOL [306]
- ACTA CRYSTALLOGR D STRUCT BIOL [267]
- NAT CHEM BIOL [245]
- EMBO J [234]
- J BIOL CHEM [213]
- CELL RES [202]
- J MOL BIOL [185]
- NAT MICROBIOL [170]
- PLOS PATHOG [158]
- J VIROL [147]
- J AM CHEM SOC [107]
- PROTEIN SCI [106]
- J STRUCT BIOL [104]
- CELL DISCOV [93]
- SCI REP [87]
- MBIO [85]
- PLOS BIOL [82]
- IMMUNITY [78]
- EMBO REP [71]
- NAT METHODS [69]
- CELL HOST MICROBE [67]
- J STRUCT BIOL X [67]
- NAT PLANTS [65]
- ISCIENCE [55]
- SCI TRANSL MED [55]
- NEURON [52]
- PROTEIN CELL [52]
- J CLIN INV [51]
- INT J MOL SCI [46]
- RES SQ [45]
- J MED CHEM [43]
- LIFE SCI ALLIANCE [42]
- FEBS J [39]
- VIRUSES [38]
- SIGNAL TRANSDUCT TARGET THER [36]
- ACS NANO [34]
- IUCRJ [34]
- PNAS NEXUS [34]
- EBIOMEDICINE [33]
- ACTA NEUROPATHOL [29]
- BLOOD [29]
- COMMUN CHEM [29]
- PLOS ONE [29]
- J CELL BIOL [28]
- BIOCHEMISTRY [27]
- DEV CELL [27]
- SCI IMMUNOL [27]
- VITA [27]
- CURR BIOL [26]
- NPJ VACCINES [26]
- MOL PLANT [25]
- INT J BIOL MACROMOL [24]
- FEBS LETT [23]
- J.MOL.CELL.CARDIOL. [23]
- ACS CHEM BIOL [22]
- ADV SCI [22]
- ANGEW CHEM INT ED ENGL [22]
- ACS CENT SCI [19]
- FRONT MOL BIOSCI [19]
- NAT CELL BIOL [19]
- BIOCHEM J [18]
- NATL SCI REV [18]
- RNA [18]
- NAT NEUROSCI [17]
- PLANT COMMUN. [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- GENES DEV [16]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
- NAT IMMUNOL [15]
- J.THROMB.HAEMOST. [14]
- NAT CATAL [14]
- PLANT CELL [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [13]
- FRONT IMMUNOL [13]
- MOL MICROBIOL [13]
- BIOMOLECULES [12]
- BIOPHYS J [12]
- CELL DEATH DIFFER. [12]
- CELL REP MED [12]
- J EXP MED [12]
- NAT CHEM [12]
- CELL REP PHYS SCI [11]
- ACTA PHARMACOL.SIN. [10]
- J MOL CELL BIOL [10]
- NAT CARDIOVASC RES [10]
- NAT NANOTECHNOL [10]
Software
- CRYOSPARC [9564]
- RELION [6869]
- CTFFIND [1383]
- GCTF [574]
- CISTEM [269]
- COOT [244]
- PHENIX [225]
- UCSF CHIMERAX [218]
- FREALIGN [166]
- WARP [166]
- SPIDER [94]
- IMOD [93]
- EMAN2 [90]
- EMAN [85]
- SPHIRE [85]
- CRYOLO [79]
- DYNAMO [75]
- UCSF CHIMERA [69]
- AIMLESS [43]
- CHIMERA [42]
- ISOLDE [37]
- MATLAB [36]
- XMIPP [35]
- JSPR [34]
- APPION [28]
- PYTOM [27]
- SIMPLE [20]
- PEET [19]
- AV3 [18]
- CTFTILT [18]
- IMAGIC [17]
- MOLREP [15]
- POINTLESS [15]
- AUTO3DEM [13]
- EMAN1 [11]
- MOTIONCORR2 [11]
- SCIPION [11]
- EMCLARITY [10]
- FREALIX [10]
- REFMAC [10]
- TOPAZ [10]
- CTFPHASEFLIP [9]
- EMAN1, EMAN2 [9]
- EMAN1, FREALIGN [9]
- FOCUS [9]
- IHRSR [9]
- SPIDER, FREALIGN [9]
- TOM TOOLBOX [9]
- PHASER [8]
- MPSA [7]
- SPARX [7]
- SPRING [7]
- SUBTOM [7]
- TOM [7]
- XDS [7]
- XSCALE [7]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- EMREADY [6]
- IMAGIC-5 [6]
- CCP4 PACKAGE [5]
- CTFFIND3 [5]
- CTFFIND4 [5]
- EMAN2, RELION1.2 [5]
- IMAGIC, SPIDER [5]
- IMIRS [5]
- J3DR [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- UNBLUR, CTFFIND4, FREALIGN [5]
- JSPR, EMAN, EMAN2 [4]
- M [4]
- RSREF2.0 [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN [4]
- STOPGAP [4]
- XMIPP, FREALIGN [4]
- AMIRAFPM [3]
- CHIMERA, FLEX-EM [3]
- CHIMERA, FLEX-EM, MODELLER, TEMPY [3]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMAN2/SPARX [3]
- EMPFT, POR, P3DR [3]
- IMAGIC-5, SPIDER [3]
- JALIGN [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- NAMD [3]
- NOVACTF [3]
- PFT EM3DR [3]
- SITUS,CHIMERA [3]
- ARP/WARP [2]
- CHIMERA, COOT [2]
- CHIMERA, FLEXEM [2]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- CRYOS [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DEEPEMHANCER [2]
- EM3DR2, P3DR [2]
- EMAN, EMAN2 [2]
- EMAN, SPIDER [2]
Microscope
- FEI TITAN KRIOS [11879]
- TFS KRIOS [7048]
- FEI TALOS ARCTICA [1115]
- TFS GLACIOS [952]
- JEOL CRYO ARM 300 [316]
- FEI POLARA 300 [284]
- FEI TECNAI F20 [194]
- FEI TITAN [151]
- FEI TECNAI ARCTICA [137]
- FEI TECNAI F30 [111]
- TFS TALOS [109]
- FEI TECNAI SPIRIT [78]
- FEI TECNAI 20 [61]
- JEOL CRYO ARM 200 [44]
- JEOL 3200FSC [38]
- FEI TECNAI 12 [37]
- FEI/PHILIPS CM300FEG/T [20]
- FEI/PHILIPS CM200FEG [16]
- JEOL 2100F [15]
- JEOL 2010F [14]
- TFS TITAN THEMIS [11]
- JEOL 1230 [10]
- JEOL 1400/HR YPS FEG [10]
- FEI/PHILIPS EM420 [9]
- JEOL 2200FS [9]
- TFS TALOS F200C [9]
- JEOL 3200FS [8]
- TFS TALOS L120C [7]
- FEI MORGAGNI [6]
- JEOL 1400 [5]
- FEI/PHILIPS CM120T [4]
- JEOL 2100 [4]
- JEOL 2200FSC [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- FEI/PHILIPS CM12 [1]
- HITACHI H-9500SD [1]
- JEOL 1200EX [1]
- JEOL 1200EXII [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
- SHUIMU TOTEM 300S [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [22428]
- LAB6 [189]
- OTHER [89]
- TUNGSTEN HAIRPIN [19]
Film or detector model
- GATAN K3 6K X 4K [6384]
- GATAN K3 BIOQUANTUM 6K X 4K [5356]
- GATAN K2 SUMMIT 4K X 4K [3932]
- FEI FALCON IV 4K X 4K [2816]
- FEI FALCON III 4K X 4K [1445]
- TFS FALCON 4I 4K X 4K [796]
- GATAN K2 QUANTUM 4K X 4K [621]
- FEI FALCON II 4K X 4K [342]
- GATAN K3 BIOCONTINUUM 6K X 4K [290]
- GATAN ULTRASCAN 4000 4K X 4K [121]
- KODAK SO-163 FILM [92]
- OTHER [90]
- FEI CETA 4K X 4K [75]
- FEI EAGLE 4K X 4K [63]
- TVIPS TEMCAM-F416 4K X 4K [60]
- GATAN K2 BASE 4K X 4K [51]
- GATAN K2 4K X 4K [35]
- DIRECT ELECTRON DE-20 5K X 3K [25]
- FEI EAGLE 2K X 2K [25]
- DIRECT ELECTRON DE-64 8K X 8K [18]
- FEI FALCON I 4K X 4K [17]
- DIRECT ELECTRON APOLLO 4K X 4K [15]
- GATAN ULTRASCAN 1000 2K X 2K [12]
- GENERIC GATAN 4K X 4K [11]
- TVIPS TEMCAM-F415 4K X 4K [11]
- DECTRIS SINGLA 1K X 1K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN K2 IS 4K X 4K [8]
- GENERIC CCD [5]
- TVIPS TEMCAM-F816 8K X 8K [5]
- DIRECT ELECTRON DE-16 4K X 4K [4]
- TVIPS TEMCAM-F224 2K X 2K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- GATAN ALPINE 2.3K X 3.2K [3]
- KODAK 4489 FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC TVIPS [2]
- GENERIC TVIPS 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- GATAN MULTISCAN [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN 2K X 2K [1]
EMPIAR Experiment type
- EMDB [527]
- FIB-SEM [24]
- CLEM [8]
- SBF-SEM [8]
- EXCEPTION [7]
- SSET [3]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [477]
- MICROGRAPHS - SINGLE FRAME [148]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [46]
- TILT SERIES [24]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [11]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [5]
- SUBTOMOGRAMS [2]
- MODEL [1]
- STITCHED MAPS [1]
External links
- PDB [21025]
- UniProt [15850]
- PDBe-Kb [14669]
- AlphaFold DB [14315]
- InterPro [12642]
- Gene Ontology [12476]
- Pfam [11474]
- ChEBI [9562]
- ChEMBL [8685]
- DrugBank [7843]
- Complex Portal [4655]
- EMPIAR [2493]
- EMDB [526]
- SCOP2 [269]
- CATH [161]
- BioImage Archive [8]
CryoEM
Q-score:
0.333
Similar entry percentile: 4%
Similar entry percentile: 4%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.333
Similar entry percentile: 2%
Similar entry percentile: 2%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.512
Similar entry percentile: 43%
Similar entry percentile: 43%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.461
Similar entry percentile: 48%
Similar entry percentile: 48%
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.78 Å
EM Method: Single-particle
Resolution: 2.78 Å
EM Method: Single-particle
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.34 Å
EM Method: Single-particle
Resolution: 3.34 Å
EM Method: Single-particle
Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK
bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]
CryoEM
Q-score:
0.475
Similar entry percentile: 57%
Similar entry percentile: 57%
Rasmussen A, Hemmelmann N, Bahner J, Hove TT, Flegler VJ, Kraft C, Hedrich R, Rasmussen T, Bottcher B
To Be Published
CryoEM
Q-score:
0.528
Similar entry percentile: 52%
Similar entry percentile: 52%
Rasmussen A, Hemmelmann N, Bahner J, Hove TT, Flegler VJ, Kraft C, Hedrich R, Rasmussen T, Bottcher B
To Be Published
CryoEM
Q-score:
0.639
Similar entry percentile: 92%
Similar entry percentile: 92%
Kralova A, Hanke L
To Be Published
CryoEM
Q-score:
0.442
Similar entry percentile: 63%
Similar entry percentile: 63%
Duyvesteyn HME, Stuart DI, Ren J
To Be Published
Filter By
Current Database
- EMDB [22725]
- EMPIAR [577]
Current status
- REL [23302]
Sample type
- Complex [20132]
- Protein [18123]
- Ligand [11364]
- RNA [2604]
- DNA [1619]
- Cellular component [1110]
- Virus [1102]
- Sample [280]
- Cell [240]
- Tissue [134]
- Other [91]
Organism
- Homo sapiens [9173]
- Synthetic construct [1432]
- Mus musculus [1308]
- Escherichia coli [1251]
- Saccharomyces cerevisiae [1002]
- Severe acute respiratory syndrome coronavirus [950]
- Escherichia coli [598]
- Rattus norvegicus [527]
- Oryctolagus cuniculus [478]
- Human immunodeficiency virus 1 [369]
- Saccharomyces cerevisiae [366]
- Lama glama [336]
- Sus scrofa [334]
- Bos taurus [313]
- Xenopus laevis [257]
- Arabidopsis thaliana [250]
- Mycolicibacterium smegmatis [131]
- Leishmania tarentolae [128]
- Gallus gallus [127]
- Bacillus subtilis [124]
- Mycobacterium tuberculosis [119]
- Drosophila melanogaster [115]
- Macaca mulatta [114]
- Influenza a virus [113]
- Geobacillus stearothermophilus [113]
- Escherichia coli [104]
- Pseudomonas aeruginosa [98]
- Staphylococcus aureus [95]
- Danio rerio [90]
- Pseudomonas aeruginosa [85]
- Vicugna pacos [76]
- Ovis aries [76]
- Chlamydomonas reinhardtii [74]
- Chaetomium thermophilum [73]
- Chaetomium thermophilum [71]
- Caenorhabditis elegans [71]
- Trypanosoma brucei [65]
- Thermus thermophilus [64]
- Mycobacterium tuberculosis [61]
- Enterobacteria phage t4 [60]
- Plasmodium falciparum [55]
- Bacillus sp. (strain ps3) [54]
- Severe acute respiratory syndrome coronavirus [51]
- Parengyodontium album [49]
- Tetrahymena thermophila [49]
- Bacillus subtilis [47]
- Lassa mammarenavirus [46]
- Schizosaccharomyces pombe [46]
- Aequorea victoria [45]
- Clostridioides difficile [44]
- Mycoplasma pneumoniae [43]
- Oryza sativa [42]
- Saccharolobus solfataricus [41]
- Spinacia oleracea [41]
- Vibrio cholerae [41]
- Trypanosoma brucei [39]
- Plasmodium falciparum [39]
- Macaca fascicularis [39]
- Dictyostelium discoideum [38]
- Escherichia coli [38]
- Cricetulus griseus [37]
- Aquifex aeolicus [37]
- Legionella pneumophila [37]
- Klebsiella pneumoniae [37]
- Saccharomyces cerevisiae [36]
- Torpedo marmorata [36]
- Mycolicibacterium smegmatis [35]
- Adeno-associated dependoparvovirus a [34]
- Orthobornavirus bornaense [34]
- Simian virus 40 [34]
- Amanita phalloides [34]
- Salpingoeca rosetta (strain atcc 50818 / bsb-021) [34]
- Salmonella enterica [34]
- Escherichia virus t7 [33]
- Euglena gracilis [33]
- Pyrococcus furiosus [32]
- Anthocerotibacter panamensis [32]
- Human herpesvirus 1 [31]
- Azotobacter vinelandii [31]
- Rous sarcoma virus [30]
- Thermococcus profundus [29]
- Dengue virus [28]
- (no species) [28]
- Eastern equine encephalitis virus [27]
- Azotobacter vinelandii [27]
- Escherichia coli [27]
- Influenza a virus [27]
- Salmonella enterica [27]
- Clostridium botulinum [26]
- Enterobacteria phage t4 [26]
- Dna molecule [26]
- Hepatitis b virus [25]
- Acetivibrio thermocellus [25]
- Listeria innocua [24]
- Pyrococcus furiosus [24]
- Human immunodeficiency virus 1 [24]
- Escherichia coli [24]
- Clostridium perfringens [23]
- Strongylocentrotus purpuratus [23]
- Unidentified adenovirus [22]
EM Method
- Single-particle [21170]
- Helical reconstruction [1044]
- Subtomogram averaging [331]
- Electron Crystallography [98]
- Tomography [82]
Resolution
- < 2Å [273]
- ≥ 2Å and < 3Å [6207]
- ≥ 3Å and < 4Å [11081]
- ≥ 4Å and < 5Å [2415]
- ≥ 5Å and < 6Å [505]
- ≥ 6Å and < 8Å [848]
- ≥ 8Å and < 12Å [548]
- ≥ 12Å and < 16Å [171]
- ≥ 16Å and < 20Å [143]
- ≥ 20Å and < 30Å [302]
- ≥ 30Å [117]
Model molecular weight
- 0-50 kDa [330]
- 50-100 kDa [1028]
- 100-250 kDa [4895]
- 250-500 kDa [4201]
- 500-1000 kDa [2175]
- 1-2 MDa [1054]
- 2-5 MDa [1314]
- 5-10 MDa [290]
- > 10 MDa [223]
Release Date
- 2026 [3797]
- 2025 [4944]
- 2024 [4149]
- 2023 [2886]
- 2022 [2378]
- 2021 [1733]
- 2020 [1430]
- 2019 [880]
- 2018 [413]
- 2017 [258]
- 2016 [177]
- 2015 [62]
- 2014 [50]
- 2013 [36]
- 2012 [20]
- 2011 [22]
- 2010 [17]
- 2009 [13]
- 2007 [11]
- 2006 [18]
- 2005 [5]
- 2003 [1]
- 2002 [2]
Author by name
- Liu Y [536]
- Li Y [485]
- Wang X [475]
- Zhang Y [461]
- Wang Y [446]
- Zhang X [445]
- Wang J [375]
- Ward AB [372]
- Li Z [356]
- Zhang Z [348]
- Gao Y [345]
- Zhang J [329]
- Wang H [318]
- Zhang L [309]
- Li X [300]
- Li H [295]
- Wang L [281]
- Liu S [277]
- Zhang S [273]
- Chen Y [252]
- Skiniotis G [252]
- Zhao Y [245]
- Li S [240]
- Li J [226]
- Lyumkis D [222]
- Marks AR [219]
- Zhou ZH [219]
- Beckmann R [212]
- Hu Y [209]
- Liu X [208]
- Chen X [207]
- Papasergi-scott MM [207]
- Shi Y [206]
- Yang Y [200]
- Liu C [199]
- Yuan Q [198]
- Liu J [197]
- Miotto MC [197]
- Lee J [192]
- Wang C [192]
- Chen J [191]
- Xu Y [191]
- Zhang H [190]
- Seven AB [189]
- Liu Z [188]
- Klinge S [186]
- Wang Q [186]
- He F [185]
- Gmeiner P [183]
- Wang W [183]
- Xu C [182]
- Zhou J [182]
- Kobilka BK [178]
- Li W [177]
- Wang Z [177]
- Zhu Y [177]
- Panova O [174]
- Wang M [174]
- Yang W [173]
- Cramer P [171]
- Dridi H [171]
- Reiken S [171]
- Rubinstein JL [171]
- Weninger G [170]
- Wu M [170]
- Huang J [169]
- Liu L [168]
- Hilger D [165]
- Wu J [163]
- Hildebrand PW [162]
- Kotecha A [162]
- Batebi H [160]
- Casiraghi M [160]
- Chen M [160]
- Eskici G [160]
- Maul L [160]
- Perez-hernandez G [160]
- Tchagou C [160]
- Brown A [159]
- Du J [159]
- Zhu X [158]
- Zhou Y [156]
- Yang Z [155]
- Cheng J [152]
- Williamson JR [151]
- Zhang R [151]
- Vanden Broeck A [150]
- Berninghausen O [149]
- Raunser S [149]
- Yang F [149]
- Zhou L [149]
- Wang S [148]
- Chen Z [147]
- Kwong PD [147]
- Wronska A [147]
- Zhang B [146]
- Li L [142]
- Li M [141]
- Han S [140]
- Zhang W [140]
Author by ORCID
- Skiniotis G [233]
- Papasergi-scott MM [194]
- Gao Y [193]
- He F [183]
- Ward AB [180]
- Gmeiner P [180]
- Lyumkis D [177]
- Kobilka BK [174]
- Zhou ZH [169]
- Klinge S [166]
- Hilger D [161]
- Batebi H [160]
- Panova O [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Brown A [157]
- Miotto MC [152]
- Vanden Broeck A [142]
- Raunser S [137]
- Beckmann R [131]
- Doran MH [128]
- Ho MC [127]
- Kwong PD [125]
- Weninger G [125]
- Beneke T [123]
- Wheeler RJ [120]
- Gluenz E [120]
- Fochler S [120]
- Cottrell CA [117]
- Fuzik T [112]
- Kotecha A [111]
- Wang CH [111]
- Kishikawa JI [111]
- Zhou L [108]
- Plevka P [108]
- Du J [107]
- Hummer G [102]
- Ranson NA [102]
- Williamson JR [101]
- Wronska A [101]
- Lu W [99]
- Rubinstein JL [98]
- Hu Y [96]
- Wu M [96]
- Gao GF [94]
- Yang CH [93]
- Carrique L [92]
- Schief WR [92]
- Chiu W [92]
- Hardwick SW [90]
- Baker D [89]
- Steyaert J [88]
- Yokoyama K [88]
- Aricescu AR [88]
- Venugopal H [87]
- Xia X [87]
- Henderson R [87]
- Lee SY [86]
- Fort C [85]
- Dridi H [82]
- Scheres SHW [82]
- Cheng J [82]
- Frost A [81]
- Cheng Y [80]
- Letts JA [80]
- Hite RK [80]
- Lander GC [80]
- Chirgadze DY [79]
- Degenhardt MFS [79]
- Edwards RJ [78]
- Malinauskas T [76]
- Stagno J [76]
- Aiyer S [75]
- Hattne J [75]
- Yang F [74]
- Stahlberg H [74]
- Pardon E [74]
- Martynowycz MW [74]
- Borgnia MJ [73]
- Torres JL [73]
- Mao Y [72]
- Marks AR [72]
- Hallberg BM [72]
- Gil-carton D [72]
- Itoh Y [71]
- Acharya P [71]
- Chang YC [71]
- Amunts A [71]
- Berninghausen O [71]
- Urlaub H [71]
- Dutzler R [70]
- Paulino C [69]
- Wang YX [69]
- Arragain B [68]
- Cramer P [67]
- Tan YZ [67]
- Thoms M [67]
- Lau B [67]
- Carnathan DG [67]
- Cusack S [66]
Journal
- NAT COMMUN [4975]
- TO BE PUBLISHED [2415]
- NATURE [1943]
- NAT STRUCT MOL BIOL [1445]
- BIORXIV [1401]
- PNAS [1210]
- SCIENCE [1123]
- SCI ADV [948]
- MOL CELL [850]
- ELIFE [710]
- CELL [675]
- STRUCTURE [487]
- NUCLEIC ACIDS RES [446]
- CELL REP [442]
- COMMUN BIOL [306]
- ACTA CRYSTALLOGR D STRUCT BIOL [267]
- NAT CHEM BIOL [245]
- EMBO J [234]
- J BIOL CHEM [213]
- CELL RES [202]
- J MOL BIOL [185]
- NAT MICROBIOL [170]
- PLOS PATHOG [158]
- J VIROL [147]
- J AM CHEM SOC [107]
- PROTEIN SCI [106]
- J STRUCT BIOL [104]
- CELL DISCOV [93]
- SCI REP [87]
- MBIO [85]
- PLOS BIOL [82]
- IMMUNITY [78]
- EMBO REP [71]
- NAT METHODS [69]
- CELL HOST MICROBE [67]
- J STRUCT BIOL X [67]
- NAT PLANTS [65]
- ISCIENCE [55]
- SCI TRANSL MED [55]
- NEURON [52]
- PROTEIN CELL [52]
- J CLIN INV [51]
- INT J MOL SCI [46]
- RES SQ [45]
- J MED CHEM [43]
- LIFE SCI ALLIANCE [42]
- FEBS J [39]
- VIRUSES [38]
- SIGNAL TRANSDUCT TARGET THER [36]
- ACS NANO [34]
- IUCRJ [34]
- PNAS NEXUS [34]
- EBIOMEDICINE [33]
- ACTA NEUROPATHOL [29]
- BLOOD [29]
- COMMUN CHEM [29]
- PLOS ONE [29]
- J CELL BIOL [28]
- BIOCHEMISTRY [27]
- DEV CELL [27]
- SCI IMMUNOL [27]
- VITA [27]
- CURR BIOL [26]
- NPJ VACCINES [26]
- MOL PLANT [25]
- INT J BIOL MACROMOL [24]
- FEBS LETT [23]
- J.MOL.CELL.CARDIOL. [23]
- ACS CHEM BIOL [22]
- ADV SCI [22]
- ANGEW CHEM INT ED ENGL [22]
- ACS CENT SCI [19]
- FRONT MOL BIOSCI [19]
- NAT CELL BIOL [19]
- BIOCHEM J [18]
- NATL SCI REV [18]
- RNA [18]
- NAT NEUROSCI [17]
- PLANT COMMUN. [17]
- BIOCHEM BIOPHYS RES COMMUN [16]
- GENES DEV [16]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [15]
- NAT IMMUNOL [15]
- J.THROMB.HAEMOST. [14]
- NAT CATAL [14]
- PLANT CELL [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [13]
- FRONT IMMUNOL [13]
- MOL MICROBIOL [13]
- BIOMOLECULES [12]
- BIOPHYS J [12]
- CELL DEATH DIFFER. [12]
- CELL REP MED [12]
- J EXP MED [12]
- NAT CHEM [12]
- CELL REP PHYS SCI [11]
- ACTA PHARMACOL.SIN. [10]
- J MOL CELL BIOL [10]
- NAT CARDIOVASC RES [10]
- NAT NANOTECHNOL [10]
Software
- CRYOSPARC [9564]
- RELION [6869]
- CTFFIND [1383]
- GCTF [574]
- CISTEM [269]
- COOT [244]
- PHENIX [225]
- UCSF CHIMERAX [218]
- FREALIGN [166]
- WARP [166]
- SPIDER [94]
- IMOD [93]
- EMAN2 [90]
- EMAN [85]
- SPHIRE [85]
- CRYOLO [79]
- DYNAMO [75]
- UCSF CHIMERA [69]
- AIMLESS [43]
- CHIMERA [42]
- ISOLDE [37]
- MATLAB [36]
- XMIPP [35]
- JSPR [34]
- APPION [28]
- PYTOM [27]
- SIMPLE [20]
- PEET [19]
- AV3 [18]
- CTFTILT [18]
- IMAGIC [17]
- MOLREP [15]
- POINTLESS [15]
- AUTO3DEM [13]
- EMAN1 [11]
- MOTIONCORR2 [11]
- SCIPION [11]
- EMCLARITY [10]
- FREALIX [10]
- REFMAC [10]
- TOPAZ [10]
- CTFPHASEFLIP [9]
- EMAN1, EMAN2 [9]
- EMAN1, FREALIGN [9]
- FOCUS [9]
- IHRSR [9]
- SPIDER, FREALIGN [9]
- TOM TOOLBOX [9]
- PHASER [8]
- MPSA [7]
- SPARX [7]
- SPRING [7]
- SUBTOM [7]
- TOM [7]
- XDS [7]
- XSCALE [7]
- EMAN2, SPIDER, BESPOKE-2D-ALIGNMENT, BESPOKE-X-AND-Y-SHIFTING [6]
- EMREADY [6]
- IMAGIC-5 [6]
- CCP4 PACKAGE [5]
- CTFFIND3 [5]
- CTFFIND4 [5]
- EMAN2, RELION1.2 [5]
- IMAGIC, SPIDER [5]
- IMIRS [5]
- J3DR [5]
- MPSA, EMAN, EMAN2 [5]
- SITUS [5]
- UNBLUR, CTFFIND4, FREALIGN [5]
- JSPR, EMAN, EMAN2 [4]
- M [4]
- RSREF2.0 [4]
- SPIDER PACKAGE [4]
- SPIDER, EMAN [4]
- STOPGAP [4]
- XMIPP, FREALIGN [4]
- AMIRAFPM [3]
- CHIMERA, FLEX-EM [3]
- CHIMERA, FLEX-EM, MODELLER, TEMPY [3]
- CHIMERA, SITUS [3]
- CTFFIND4, RELION, BSOFT [3]
- EMAN2/SPARX [3]
- EMPFT, POR, P3DR [3]
- IMAGIC-5, SPIDER [3]
- JALIGN [3]
- MODELLER, CHIMERA, FLEX-EM [3]
- NAMD [3]
- NOVACTF [3]
- PFT EM3DR [3]
- SITUS,CHIMERA [3]
- ARP/WARP [2]
- CHIMERA, COOT [2]
- CHIMERA, FLEXEM [2]
- CHIMERA, VEDA UROX , MODELLER FLEX-EM [2]
- CRYOS [2]
- CTFFIND4, SIMPLE, EMAN2, RELION [2]
- DEEPEMHANCER [2]
- EM3DR2, P3DR [2]
- EMAN, EMAN2 [2]
- EMAN, SPIDER [2]
Microscope
- FEI TITAN KRIOS [11879]
- TFS KRIOS [7048]
- FEI TALOS ARCTICA [1115]
- TFS GLACIOS [952]
- JEOL CRYO ARM 300 [316]
- FEI POLARA 300 [284]
- FEI TECNAI F20 [194]
- FEI TITAN [151]
- FEI TECNAI ARCTICA [137]
- FEI TECNAI F30 [111]
- TFS TALOS [109]
- FEI TECNAI SPIRIT [78]
- FEI TECNAI 20 [61]
- JEOL CRYO ARM 200 [44]
- JEOL 3200FSC [38]
- FEI TECNAI 12 [37]
- FEI/PHILIPS CM300FEG/T [20]
- FEI/PHILIPS CM200FEG [16]
- JEOL 2100F [15]
- JEOL 2010F [14]
- TFS TITAN THEMIS [11]
- JEOL 1230 [10]
- JEOL 1400/HR YPS FEG [10]
- FEI/PHILIPS EM420 [9]
- JEOL 2200FS [9]
- TFS TALOS F200C [9]
- JEOL 3200FS [8]
- TFS TALOS L120C [7]
- FEI MORGAGNI [6]
- JEOL 1400 [5]
- FEI/PHILIPS CM120T [4]
- JEOL 2100 [4]
- JEOL 2200FSC [4]
- JEOL 3100FFC [4]
- FEI/PHILIPS CM200T [3]
- JEOL 3000SFF [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/ST [2]
- FEI/PHILIPS CM300FEG/HE [2]
- FEI/PHILIPS CM12 [1]
- HITACHI H-9500SD [1]
- JEOL 1200EX [1]
- JEOL 1200EXII [1]
- JEOL 4000 [1]
- JEOL KYOTO-3000SFF [1]
- SHUIMU TOTEM 300S [1]
- TFS TUNDRA [1]
Electron Source
- FIELD EMISSION GUN [22428]
- LAB6 [189]
- OTHER [89]
- TUNGSTEN HAIRPIN [19]
Film or detector model
- GATAN K3 6K X 4K [6384]
- GATAN K3 BIOQUANTUM 6K X 4K [5356]
- GATAN K2 SUMMIT 4K X 4K [3932]
- FEI FALCON IV 4K X 4K [2816]
- FEI FALCON III 4K X 4K [1445]
- TFS FALCON 4I 4K X 4K [796]
- GATAN K2 QUANTUM 4K X 4K [621]
- FEI FALCON II 4K X 4K [342]
- GATAN K3 BIOCONTINUUM 6K X 4K [290]
- GATAN ULTRASCAN 4000 4K X 4K [121]
- KODAK SO-163 FILM [92]
- OTHER [90]
- FEI CETA 4K X 4K [75]
- FEI EAGLE 4K X 4K [63]
- TVIPS TEMCAM-F416 4K X 4K [60]
- GATAN K2 BASE 4K X 4K [51]
- GATAN K2 4K X 4K [35]
- DIRECT ELECTRON DE-20 5K X 3K [25]
- FEI EAGLE 2K X 2K [25]
- DIRECT ELECTRON DE-64 8K X 8K [18]
- FEI FALCON I 4K X 4K [17]
- DIRECT ELECTRON APOLLO 4K X 4K [15]
- GATAN ULTRASCAN 1000 2K X 2K [12]
- GENERIC GATAN 4K X 4K [11]
- TVIPS TEMCAM-F415 4K X 4K [11]
- DECTRIS SINGLA 1K X 1K [10]
- DIRECT ELECTRON DE-10 5K X 4K [9]
- GATAN K2 IS 4K X 4K [8]
- GENERIC CCD [5]
- TVIPS TEMCAM-F816 8K X 8K [5]
- DIRECT ELECTRON DE-16 4K X 4K [4]
- TVIPS TEMCAM-F224 2K X 2K [4]
- DIRECT ELECTRON DE-12 4K X 3K [3]
- GATAN ALPINE 2.3K X 3.2K [3]
- KODAK 4489 FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [2]
- GENERIC TVIPS [2]
- GENERIC TVIPS 2K X 2K [2]
- GENERIC TVIPS 4K X 4K [2]
- GATAN MULTISCAN [1]
- GATAN ORIUS SC1000 4K X 2.7K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC FILM [1]
- GENERIC GATAN 2K X 2K [1]
EMPIAR Experiment type
- EMDB [527]
- FIB-SEM [24]
- CLEM [8]
- SBF-SEM [8]
- EXCEPTION [7]
- SSET [3]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [477]
- MICROGRAPHS - SINGLE FRAME [148]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [46]
- TILT SERIES [24]
- RECONSTRUCTED VOLUMES [20]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [11]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [6]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [5]
- SUBTOMOGRAMS [2]
- MODEL [1]
- STITCHED MAPS [1]
External links
- PDB [21025]
- UniProt [15850]
- PDBe-Kb [14669]
- AlphaFold DB [14315]
- InterPro [12642]
- Gene Ontology [12476]
- Pfam [11474]
- ChEBI [9562]
- ChEMBL [8685]
- DrugBank [7843]
- Complex Portal [4655]
- EMPIAR [2493]
- EMDB [526]
- SCOP2 [269]
- CATH [161]
- BioImage Archive [8]