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Peptidase

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Structure for peptidase homologue M38.982: urease

Summary Gene structure Alignment Tree Sequences Sequence features Distribution Structure Literature Pharma

 

PDB Organism Resolution Comment
2KAU_C Klebsiella aerogenes 2.00 Å mature
TERTIARY STRUCTURE DATA
Comment Resolution PDB PDBe SCOP CATH PDBSum Proteopedia Reference
Bacillus pasteurii
mature  peptidase 1.85 Å 1IE7 1IE7 1IE7 1IE7 1IE7 1IE7 Benini et al., 2001
mature  peptidase 2.10 Å 1S3T 1S3T 1S3T 1S3T 1S3T 1S3T Benini et al., 2004
mature  peptidase 1.65 Å 1UBP 1UBP 1UBP 1UBP 1UBP 1UBP
mature  peptidase 2.00 Å 2UBP 2UBP 2UBP 2UBP 2UBP 2UBP Benini et al., 1999
mature  peptidase 2.00 Å 3UBP 3UBP 3UBP 3UBP 3UBP 3UBP Benini et al., 1999
mature  peptidase 1.50 Å 4AC7 4AC7 4AC7 4AC7 4AC7 4AC7 Benini et al., 2013
mature  peptidase 1.58 Å 4CEU 4CEU 4CEU 4CEU 4CEU 4CEU Benini et al., 2014
mature  peptidase 1.59 Å 4CEX 4CEX 4CEX 4CEX 4CEX 4CEX Benini et al., 2014
mature  peptidase 1.55 Å 4UBP 4UBP 4UBP 4UBP 4UBP 4UBP Benini et al., 2000
mature  peptidase 1.65 Å 5A6T 5A6T 5A6T 5A6T 5A6T 5A6T Mazzei et al., 2016
complex with 2,5-dihydroxybenzensulfonate 1.75 Å 5FSD 5FSD 5FSD 5FSD 5FSD 5FSD
complex with 1,4-benzoquinone 2.07 Å 5FSE 5FSE 5FSE 5FSE 5FSE 5FSE
Canavalia ensiformis
mature  peptidase 2.05 Å 3LA4 3LA4 3LA4 3LA4 3LA4 3LA4 Balasubramanian & Ponnuraj, 2010
mature  peptidase 2.20 Å 4GOA 4GOA 4GOA 4GOA 4GOA 4GOA
mature  peptidase 1.49 Å 4GY7 4GY7 4GY7 4GY7 4GY7 4GY7
mature  peptidase 1.52 Å 4H9M 4H9M 4H9M 4H9M 4H9M 4H9M
Helicobacter mustelae
mature  peptidase 3.00 Å 3QGA 3QGA 3QGA 3QGA 3QGA 3QGA
mature  peptidase 3.00 Å 3QGK 3QGK 3QGK 3QGK 3QGK 3QGK
Helicobacter pylori
mature  peptidase 3.00 Å 1E9Y 1E9Y 1E9Y 1E9Y 1E9Y 1E9Y Ha et al., 2001
mature  peptidase 3.00 Å 1E9Z 1E9Z 1E9Z 1E9Z 1E9Z 1E9Z Ha et al., 2001
Klebsiella aerogenes
mature  peptidase 2.20 Å 1A5K 1A5K 1A5K 1A5K 1A5K 1A5K Pearson et al., 1998
Lys217Glu mutant 2.20 Å 1A5K 1A5K 1A5K 1A5K 1A5K 1A5K Pearson et al., 1998
mature  peptidase 2.20 Å 1A5L 1A5L 1A5L 1A5L 1A5L 1A5L Pearson et al., 1998
Lys217Cys mutant 2.20 Å 1A5L 1A5L 1A5L 1A5L 1A5L 1A5L Pearson et al., 1998
mature  peptidase 2.00 Å 1A5M 1A5M 1A5M 1A5M 1A5M 1A5M Pearson et al., 1998
Lys217Ala mutant 2.00 Å 1A5M 1A5M 1A5M 1A5M 1A5M 1A5M Pearson et al., 1998
mature  peptidase 2.40 Å 1A5N 1A5N 1A5N 1A5N 1A5N 1A5N Pearson et al., 1998
Lys217Ala mutant chemically rescued by formate and nickel 2.40 Å 1A5N 1A5N 1A5N 1A5N 1A5N 1A5N Pearson et al., 1998
mature  peptidase 2.50 Å 1A5O 1A5O 1A5O 1A5O 1A5O 1A5O Pearson et al., 1998
Lys217Cys mutant chemically rescued by formate and nickel 2.50 Å 1A5O 1A5O 1A5O 1A5O 1A5O 1A5O Pearson et al., 1998
mature  peptidase 2.50 Å 1EF2 1EF2 1EF2 1EF2 1EF2 1EF2 Yamaguchi et al., 1999
mature  peptidase 2.50 Å 1EF2 1EF2 1EF2 1EF2 1EF2 1EF2 Yamaguchi et al., 1999
mature  peptidase 2.00 Å 1EJR 1EJR 1EJR 1EJR 1EJR 1EJR Pearson et al., 2000
mature  peptidase 2.00 Å 1EJR 1EJR 1EJR 1EJR 1EJR 1EJR Pearson et al., 2000
mature  peptidase 2.00 Å 1EJS 1EJS 1EJS 1EJS 1EJS 1EJS Pearson et al., 2000
mature  peptidase 2.00 Å 1EJS 1EJS 1EJS 1EJS 1EJS 1EJS Pearson et al., 2000
mature  peptidase 2.00 Å 1EJT 1EJT 1EJT 1EJT 1EJT 1EJT Pearson et al., 2000
mature  peptidase 2.00 Å 1EJT 1EJT 1EJT 1EJT 1EJT 1EJT Pearson et al., 2000
mature  peptidase 2.00 Å 1EJU 1EJU 1EJU 1EJU 1EJU 1EJU Pearson et al., 2000
mature  peptidase 2.00 Å 1EJU 1EJU 1EJU 1EJU 1EJU 1EJU Pearson et al., 2000
mature  peptidase 2.40 Å 1EJV 1EJV 1EJV 1EJV 1EJV 1EJV Pearson et al., 2000
mature  peptidase 2.40 Å 1EJV 1EJV 1EJV 1EJV 1EJV 1EJV Pearson et al., 2000
mature  peptidase 1.90 Å 1EJW 1EJW 1EJW 1EJW 1EJW 1EJW
mature  peptidase 1.90 Å 1EJW 1EJW 1EJW 1EJW 1EJW 1EJW
mature  peptidase 1.60 Å 1EJX 1EJX 1EJX 1EJX 1EJX 1EJX
mature  peptidase 1.60 Å 1EJX 1EJX 1EJX 1EJX 1EJX 1EJX
mature  peptidase 2.00 Å 1FWA 1FWA 1FWA 1FWA 1FWA 1FWA Pearson et al., 1997
Cys319Ala mutant at pH 7.5 2.00 Å 1FWA 1FWA 1FWA 1FWA 1FWA 1FWA Pearson et al., 1997
mature  peptidase 2.00 Å 1FWB 1FWB 1FWB 1FWB 1FWB 1FWB Pearson et al., 1997
Cys319Ala mutant at pH 6.5 2.00 Å 1FWB 1FWB 1FWB 1FWB 1FWB 1FWB Pearson et al., 1997
mature  peptidase 2.00 Å 1FWC 1FWC 1FWC 1FWC 1FWC 1FWC Pearson et al., 1997
Cys319Ala mutant at pH 8.5 2.00 Å 1FWC 1FWC 1FWC 1FWC 1FWC 1FWC Pearson et al., 1997
mature  peptidase 2.00 Å 1FWD 1FWD 1FWD 1FWD 1FWD 1FWD Pearson et al., 1997
Cys319Ala mutant at pH 9.4 2.00 Å 1FWD 1FWD 1FWD 1FWD 1FWD 1FWD Pearson et al., 1997
mature  peptidase 2.00 Å 1FWE 1FWE 1FWE 1FWE 1FWE 1FWE Pearson et al., 1997
Cys319Ala mutant complex with acetohydroxamic acid 2.00 Å 1FWE 1FWE 1FWE 1FWE 1FWE 1FWE Pearson et al., 1997
mature  peptidase 2.00 Å 1FWF 1FWF 1FWF 1FWF 1FWF 1FWF Pearson et al., 1997
Cys319Asp mutant 2.00 Å 1FWF 1FWF 1FWF 1FWF 1FWF 1FWF Pearson et al., 1997
mature  peptidase 2.00 Å 1FWG 1FWG 1FWG 1FWG 1FWG 1FWG Pearson et al., 1997
Cys319Ser mutant 2.00 Å 1FWG 1FWG 1FWG 1FWG 1FWG 1FWG Pearson et al., 1997
mature  peptidase 2.00 Å 1FWH 1FWH 1FWH 1FWH 1FWH 1FWH Pearson et al., 1997
Cys319Tyr mutant 2.00 Å 1FWH 1FWH 1FWH 1FWH 1FWH 1FWH Pearson et al., 1997
mature  peptidase 2.00 Å 1FWI 1FWI 1FWI 1FWI 1FWI 1FWI Park et al., 1996
His134Ala mutant 2.00 Å 1FWI 1FWI 1FWI 1FWI 1FWI 1FWI Park et al., 1996
mature  peptidase 2.20 Å 1FWJ 1FWJ 1FWJ 1FWJ 1FWJ 1FWJ Pearson et al., 1997
mature  peptidase 2.20 Å 1FWJ 1FWJ 1FWJ 1FWJ 1FWJ 1FWJ Pearson et al., 1997
mature  peptidase 2.30 Å 1KRA 1KRA 1KRA 1KRA 1KRA 1KRA Jabri & Karplus, 1996
apoenzyme 2.30 Å 1KRA 1KRA 1KRA 1KRA 1KRA 1KRA Jabri & Karplus, 1996
mature  peptidase 2.50 Å 1KRB 1KRB 1KRB 1KRB 1KRB 1KRB Jabri & Karplus, 1996
apoenzyme 2.50 Å 1KRB 1KRB 1KRB 1KRB 1KRB 1KRB Jabri & Karplus, 1996
mature  peptidase 2.50 Å 1KRC 1KRC 1KRC 1KRC 1KRC 1KRC Jabri & Karplus, 1996
apoenzyme 2.50 Å 1KRC 1KRC 1KRC 1KRC 1KRC 1KRC Jabri & Karplus, 1996
mature  peptidase 2.00 Å 2KAU 2KAU 2KAU 2KAU 2KAU 2KAU Jabri et al., 1995
mature  peptidase 2.00 Å 2KAU 2KAU 2KAU 2KAU 2KAU 2KAU Jabri et al., 1995
mature  peptidase 1.55 Å 4EP8 4EP8 4EP8 4EP8 4EP8 4EP8 Warkentin et al., 2012
mature  peptidase 1.55 Å 4EP8 4EP8 4EP8 4EP8 4EP8 4EP8 Warkentin et al., 2012
mature  peptidase 1.75 Å 4EPB 4EPB 4EPB 4EPB 4EPB 4EPB Warkentin et al., 2012
mature  peptidase 1.75 Å 4EPB 4EPB 4EPB 4EPB 4EPB 4EPB Warkentin et al., 2012
mature  peptidase 1.70 Å 4EPD 4EPD 4EPD 4EPD 4EPD 4EPD Warkentin et al., 2012
mature  peptidase 1.70 Å 4EPD 4EPD 4EPD 4EPD 4EPD 4EPD Warkentin et al., 2012
mature  peptidase 2.05 Å 4EPE 4EPE 4EPE 4EPE 4EPE 4EPE Warkentin et al., 2012
mature  peptidase 2.05 Å 4EPE 4EPE 4EPE 4EPE 4EPE 4EPE Warkentin et al., 2012

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