Literature for peptidase S53.009: kumamolisin-As

(Topics flags: S Structure, I Inhibitor, P Specificity, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

2017
1. Yao,J., Luo,H. and Wang,X.
   Understanding the catalytic mechanism and the substrate specificity of an engineered gluten hydrolase by QM/MM molecular dynamics and free energy simulations
   J Chem Inf Model57, 1179-1186. PubMed  Europe PubMed DOI
2015
2. Zhang,Y.Z., Ran,L.Y., Li,C.Y. and Chen,X.L.
   Diversity, structures, and collagen-degrading mechanisms of bacterial collagenolytic proteases
   Appl Environ Microbiol81, 6098-6107. PubMed  Europe PubMed DOI  V
2012
3. Gordon,S.R., Stanley,E.J., Wolf,S., Toland,A., Wu,S.J., Hadidi,D., Mills,J.H., Baker,D., Pultz,I.S. and Siegel,J.B.
   Computational design of an alpha-gliadin peptidase
   J Am Chem Soc134, 20513-20520. PubMed  Europe PubMed DOI
4. Nakayama,T.
   Kumamolisin-As
   [ISSN:978-0-12-407742-3]3, 3344-3347. DOI
2010
5. Xu,Q., Li,L. and Guo,H.
   Understanding the mechanism of deacylation reaction catalyzed by the serine carboxyl peptidase kumamolisin-As: Insights from QM/MM free energy simulations
   J Phys Chem B114, 10594-10600. PubMed  Europe PubMed DOI
2007
6. Xu,Q., Guo,H.B., Wlodawer,A., Nakayama,T. and Guo,H.
   The QM/MM molecular dynamics and free energy simulations of the acylation reaction catalyzed by the serine-carboxyl peptidase kumamolisin-As
   Biochemistry46, 3784-3792. PubMed  Europe PubMed DOI
2006
7. Catara,G., Fiume,I., Iuliano,F., Maria,G., Ruggiero,G., Palmieri,G., Capasso,A. and Rossi,M.
   A new kumamolisin-like protease from Alicyclobacillus acidocaldarius: an enzyme active under extreme acidic conditions
   Biocatal Biotransformation24, 358-370. DOI  P
8. [YEAR:1-8-2006]Guo,H., Wlodawer,A., Nakayama,T., Xu,Q. and Guo,H.
   Catalytic role of proton transfers in the formation of a tetrahedral adduct in a serine carboxyl peptidase
   Biochemistry45, 9129-9137. PubMed  Europe PubMed DOI  I
9. Okubo,A., Li,M., Ashida,M., Oyama,H., Gustchina,A., Oda,K., Dunn,B.M., Wlodawer,A. and Nakayama,T.
   Processing, catalytic activity and crystal structures of kumamolisin-As with an engineered active site
   FEBS J273, 2563-2576. PubMed  Europe PubMed DOI  S
2005
10. [YEAR:16-11-2005]Guo,H., Wlodawer,A. and Guo,H.
    A general acid-base mechanism for the stabilization of a tetrahedral adduct in a serine-carboxyl peptidase: a computational study
    J Am Chem Soc127, 15662-15663. PubMed  Europe PubMed DOI
2004
11. [YEAR:10-3-2004]Wlodawer,A., Li,M., Gustchina,A., Tsuruoka,N., Ashida,M., Minakata,H., Oyama,H., Oda,K., Nishino,T. and Nakayama,T.
    Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
    J Biol Chem279, 21500-21510. PubMed  Europe PubMed DOI  S
2003
12. Tsuruoka,N., Nakayama,T., Ashida,M., Hemmi,H., Nakao,M., Minakata,H., Oyama,H., Oda,K. and Nishino,T.
    Collagenolytic serine-carboxyl proteinase from Alicyclobacillus sendaiensis strain NTAP-1: purification, characterization, gene cloning, and heterologous expression
    Appl Environ Microbiol69, 162-169. PubMed  Europe PubMed DOI
13. Tsuruoka,N., Isono,Y., Shida,O., Hemmi,H., Nakayama,T. and Nishino,T.
    Alicyclobacillus sendaiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan
    Int J Syst Evol Microbiol53, 1081-1084. PubMed  Europe PubMed DOI