Literature for clan AA

(Topics flags: S Structure, V Review. To select only the references relevant to a single topic, click the link above. See explanation.)

2019

Ahsan,M. and Senapati,S. Water plays a cocatalytic role in epoxide ring opening reaction in aspartate proteases: a QM/MM study J Phys Chem B (2019) 123, 7955-7964. PubMed Europe PubMed DOI
Windsor,I.W., Gold,B. and Raines,R.T. An n - >pi* interaction in the bound substrate of aspartic proteases replicates the oxyanion hole ACS Catal (2019) 9, 1464-1471. PubMed Europe PubMed DOI PMC EPMC

2013

Sussman,F., Villaverde,M.C., Dominguez,J.L. and Danielson,U.H. On the active site protonation state in aspartic proteases: implications for drug design Curr Pharm Des (2013) 19, 4257-4275. PubMed Europe PubMed DOI

2012

Rawlings,N.D. and Barrett,A.J. Introduction: aspartic and glutamic peptidases and their clans [ISSN:978-0-12-407744-7] (2012) 3, 3-19. DOI
Wlodawer,A., Gustchina,A. and James,M.N.G. Catalytic pathways of aspartic peptidases [ISSN:978-0-12-407744-7] (2012) 3, 19-27. DOI

2009

Llorens,C., Futami,R., Renaud,G. and Moya,A. Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases Biol Direct (2009) 4, 3-3. PubMed Europe PubMed DOI PMC EPMC V
Rawlings,N.D. and Bateman,A. Pepsin homologues in bacteria BMC Genomics (2009) 10, 437-437. PubMed Europe PubMed DOI PMC EPMC

2007

Hulko,M., Lupas,A.N. and Martin,J. Inherent chaperone-like activity of aspartic proteases reveals a distant evolutionary relation to double-psi barrel domains of AAA-ATPases Protein Sci (2007) 16, 644-653. PubMed Europe PubMed DOI PMC EPMC

2006

[YEAR:3-9-2006]Sirkis,R., Gerst,J.E. and Fass,D. Ddi1, a eukaryotic protein with the retroviral protease fold J Mol Biol (3-9-2006) 364, 376-387. PubMed Europe PubMed DOI S

2005

[YEAR:23-3-2005]Cascella,M., Micheletti,C., Rothlisberger,U. and Carloni,P. Evolutionarily conserved functional mechanics across pepsin-like and retroviral aspartic proteases J Am Chem Soc (23-3-2005) 127, 3734-3742. PubMed Europe PubMed DOI

2004

James,M.N.G. Catalytic pathway of aspartic peptidases [ISSN:0-12-079610-4] (2004) 2, 12-19. V
Rawlings,N.D. and Barrett,A.J. Introduction: aspartic peptidases and their clans [ISSN:0-12-079610-4] (2004) 2, 3-12. V

2001

Andreeva,N.S. and Rumsh,L.D. Analysis of crystal structures of aspartic proteinases: on the role of amino acid residues adjacent to the catalytic site of pepsin-like enzymes Protein Sci (2001) 10, 2439-2450. PubMed Europe PubMed DOI PMC EPMC
Northrop,D.B. Follow the protons: a low-barrier hydrogen bond unifies the mechanisms of the aspartic proteases Acc Chem Res (2001) 34, 790-797. PubMed Europe PubMed DOI
[YEAR:4-6-2001]Oh,S., Chang,W. and Suh,J. An aspartic protease analogue: intermolecular catalysis of peptide hydrolysis by carboxyl groups Bioorg Med Chem Lett (4-6-2001) 11, 1469-1472. PubMed Europe PubMed DOI

2000

[YEAR:26-4-2000]Park,H., Suh,J. and Lee,S. Ab initio studies on the catalytic mechanism of aspartic proteinases. Nucleophilic versus general acid/general base mechanism J Am Chem Soc (26-4-2000) 122, 3901-3908. DOI

1999

Castillo,R.M., Mizuguchi,K., Dhanaraj,V., Albert,A., Blundell,T.L. and Murzin,A.G. A six-stranded double-psi beta barrel is shared by several protein superfamilies Structure (1999) 7, 227-236. PubMed Europe PubMed DOI

1991

Rao,J.K., Erickson,J.W. and Wlodawer,A. Structural and evolutionary relationships between retroviral and eucaryotic aspartic proteinases Biochemistry (1991) 30, 4663-4671. PubMed Europe PubMed

1990

Rao,J.K.M. and Wlodawer,A. Is the pseudo-dyad in retroviral proteinase monomers structural or evolutionary? FEBS Lett (1990) 260, 201-205. PubMed Europe PubMed

1989

Miller,M., Jaskolski,M., Rao,J.K., Leis,J. and Wlodawer,A. Crystal structure of a retroviral protease proves relationship to aspartic protease family Nature (1989) 337, 576-579. PubMed Europe PubMed DOI S
Polgar,L. Mechanisms of Protease Action (1989)