Literature for peptidase A28.001: DNA-damage inducible protein 1

(Topics flags: S Structure, T Target, I Inhibitor. To select only the references relevant to a single topic, click the link above. See explanation.)

2024
1. Conti,B.A., Ruiz,P.D., Broton,C., Blobel,N.J., Kottemann,M.C., Sridhar,S., Lach,F.P., Wiley,T.F., Sasi,N.K., Carroll,T. and Smogorzewska,A.
   RTF2 controls replication repriming and ribonucleotide excision at the replisome
   Nat Commun15, 1943-1943. PubMed  Europe PubMed DOI
2. Fabijan,A., Polis,B., Zawadzka-Fabijan,A., Korabiewska,I., Zakrzewski,K., Nowoslawska,E. and Chojnacki,M.
   Domains in Action: Understanding Ddi1's Diverse Functions in the Ubiquitin-Proteasome System
   Int J Mol Sci25, PubMed  Europe PubMed DOI
3. Waite,K.A., Vontz,G., Lee,S.Y. and Roelofs,J.
   Proteasome condensate formation is driven by multivalent interactions with shuttle factors and ubiquitin chains
   Proc Natl Acad Sci U S A121, e2310756121-e2310756121. PubMed  Europe PubMed DOI
2020
4. El Dika,M.
   New insights into the regulation of DNA-protein crosslink repair by the aspartic protease Ddi1 in yeast
   DNA Repair (Amst)90, 102854-102854. PubMed  Europe PubMed DOI
5. Motyan,J.A., Miczi,M. and Tozser,J.
   Dimer interface organization is a main determinant of intermonomeric interactions and correlates with evolutionary relationships of retroviral and retroviral-like Ddi1 and Ddi2 proteases
   Int J Mol Sci21, PubMed  Europe PubMed DOI
6. Serbyn,N., Noireterre,A., Bagdiul,I., Plank,M., Michel,A.H., Loewith,R., Kornmann,B. and Stutz,F.
   The aspartic protease Ddi1 contributes to DNA-protein crosslink repair in yeast
   Mol Cell77, 1066-1079. PubMed  Europe PubMed DOI
7. Spasskaya,D.S., Nadolinskaia,N.I., Tutyaeva,V.V., Lysov,Y.P., Karpov,V.L. and Karpov,D.S.
   Yeast Rpn4 Links the Proteasome and DNA Repair via RAD52 Regulation
   Int J Mol Sci21, PubMed  Europe PubMed DOI
8. Suo,D., Wang,L., Zeng,T., Zhang,H., Li,L., Liu,J., Yun,J., Guan,X.Y. and Li,Y.
   NRIP3 upregulation confers resistance to chemoradiotherapy in ESCC via RTF2 removal by accelerating ubiquitination and degradation of RTF2
   Oncogenesis9, 75-75. PubMed  Europe PubMed DOI
9. Yip,M.C.J., Bodnar,N.O. and Rapoport,T.A.
   Ddi1 is a ubiquitin-dependent protease
   Proc Natl Acad Sci U S A117, 7776-7781. PubMed  Europe PubMed DOI
2019
10. Chen,X., Ebelle,D.L., Wright,B.J., Sridharan,V., Hooper,E. and Walters,K.J.
    Structure of hRpn10 bound to UBQLN2 UBL illustrates basis for complementarity between shuttle factors and substrates at the proteasome
    J Mol Biol431, 939-955. PubMed  Europe PubMed DOI  S
11. Svoboda,M., Konvalinka,J., Trempe,J.F. and Grantz Saskova,K.
    The yeast proteases Ddi1 and Wss1 are both involved in the DNA replication stress response
    DNA Repair (Amst)80, 45-51. PubMed  Europe PubMed DOI
2018
12. Bouvier,L.A., Niemirowicz,G.T., Salas-Sarduy,E., Cazzulo,J.J. and Alvarez,V.E.
    DNA-damage inducible protein 1 is a conserved metacaspase substrate that is cleaved and further destabilized in yeast under specific metabolic conditions
    FEBS J285, 1097-1110. PubMed  Europe PubMed DOI
13. Kumar,S. and Suguna,K.
    Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein
    FEBS Open Bio8, 1379-1394. PubMed  Europe PubMed DOI  S
14. Onchieku,N.M., Mogire,R., Ndung'u,L., Mwitari,P., Kimani,F., Matoke-Muhia,D., Kiboi,D. and Magoma,G.
    Deciphering the targets of retroviral protease inhibitors in Plasmodium berghei
    PLoS ONE13, e0201556-e0201556. PubMed  Europe PubMed DOI  I
15. Xiang,Y., Halin,J., Fan,Z., Hu,S., Wang,M., Qiu,L., Zhang,Z., Mattjus,P. and Zhang,Y.
    Topovectorial mechanisms control the juxtamembrane proteolytic processing of Nrf1 to remove its N-terminal polypeptides during maturation of the CNC-bZIP factor
    Toxicol Appl Pharmacol360, 160-184. PubMed  Europe PubMed DOI
2017
16. Oh,K.H., Haney,J.J., Wang,X., Chuang,C.F., Richmond,J.E. and Kim,H.
    ERG-28 controls BK channel trafficking in the ER to regulate synaptic function and alcohol response in C. elegans
    elife6, PubMed  Europe PubMed DOI
2016
17. Lehrbach,N.J. and Ruvkun,G.
    Proteasome dysfunction triggers activation of SKN-1A/Nrf1 by the aspartic protease DDI-1
    elife5, PubMed  Europe PubMed DOI  T
18. Sha,Z. and Goldberg,A.L.
    Reply to Vangala et al.: Complete inhibition of the proteasome reduces new proteasome production by causing Nrf1 aggregation
    Curr Biol26, R836-R836. PubMed  Europe PubMed DOI
19. Trempe,J.F., Saskova,K.G., Siva,M., Ratcliffe,C.D., Veverka,V., Hoegl,A., Menade,M., Feng,X., Shenker,S., Svoboda,M., Kozisek,M., Konvalinka,J. and Gehring,K.
    Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family
    Sci Rep6, 33671-33671. PubMed  Europe PubMed DOI  S
2015
20. Nowicka,U., Zhang,D., Walker,O., Krutauz,D., Castaneda,C.A., Chaturvedi,A., Chen,T.Y., Reis,N., Glickman,M.H. and Fushman,D.
    DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin
    Structure23, 542-557. PubMed  Europe PubMed DOI
2013
21. Perteguer,M.J., Gomez-Puertas,P., Canavate,C., Dagger,F., Garate,T. and Valdivieso,E.
    Ddi1-like protein from Leishmania major is an active aspartyl proteinase
    Cell Stress Chaperones18, 171-181. PubMed  Europe PubMed DOI
2012
22. Berry,C.
    Ddi1 and related proteins
    [ISSN:978-0-12-407744-7]3, 255-258. DOI
2011
23. Morawe,T., Honemann-Capito,M., von Stein,W. and Wodarz,A.
    Loss of the extraproteasomal ubiquitin receptor Rings lost impairs ring canal growth in Drosophila oogenesis
    J Cell Biol193, 71-80. PubMed  Europe PubMed DOI
24. White,R.E., Powell,D.J. and Berry,C.
    HIV proteinase inhibitors target the Ddi1-like protein of Leishmania parasites
    FASEB J25, 1729-1736. PubMed  Europe PubMed DOI
25. White,R.E., Dickinson,J.R., Semple,C.A., Powell,D.J. and Berry,C.
    The retroviral proteinase active site and the N-terminus of Ddi1 are required for repression of protein secretion
    FEBS Lett585, 139-142. PubMed  Europe PubMed DOI
2008
26. Auesukaree,C., Fuchigami,I., Homma,T., Kaneko,Y. and Harashima,S.
    Ddi1p and Rad23p play a cooperative role as negative regulators in the PHO pathway in Saccharomyces cerevisiae
    Biochem Biophys Res Commun365, 821-825. PubMed  Europe PubMed DOI
27. Gabriely,G., Kama,R., Gelin-Licht,R. and Gerst,J.E.
    Different domains of the UBL-UBA ubiquitin receptor, Ddi1/Vsm1, are involved in its multiple cellular roles
    Mol Biol Cell19, 3625-3637. PubMed  Europe PubMed DOI
2006
28. Diaz-Martinez,L.A., Kang,Y., Walters,K.J. and Clarke,D.J.
    Yeast UBL-UBA proteins have partially redundant functions in cell cycle control
    Cell Div1, 28-28. PubMed  Europe PubMed DOI
29. Ivantsiv,Y., Kaplun,L., Tzirkin-Goldin,R., Shabek,N. and Raveh,D.
    Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes
    Mol Cell Biol26, 1579-1588. PubMed  Europe PubMed DOI
30. [YEAR:3-9-2006]Sirkis,R., Gerst,J.E. and Fass,D.
    Ddi1, a eukaryotic protein with the retroviral protease fold
    J Mol Biol364, 376-387. PubMed  Europe PubMed DOI  S
2005
31. Kaplun,L., Tzirkin,R., Bakhrat,A., Shabek,N., Ivantsiv,Y. and Raveh,D.
    The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease
    Mol Cell Biol25, 5355-5362. PubMed  Europe PubMed DOI
2001
32. Bertolaet,B.L., Clarke,D.J., Wolff,M., Watson,M.H., Henze,M., Divita,G. and Reed,S.I.
    UBA domains of DNA damage-inducible proteins interact with ubiquitin
    Nat Struct Biol8, 417-422. PubMed  Europe PubMed DOI
33. [YEAR:7-8-2001]Krylov,D.M. and Koonin,E.V.
    A novel family of predicted retroviral-like aspartyl proteases with a possible key role in eukaryotic cell cycle control
    Curr Biol11, R584-R587. PubMed  Europe PubMed
1999
34. Lustgarten,V. and Gerst,J.E.
    Yeast VSM1 encodes a v-SNARE binding protein that may act as a negative regulator of constitutive exocytosis
    Mol Cell Biol19, 4480-4494. PubMed  Europe PubMed
1997
35. Liu,Y. and Xiao,W.
    Bidirectional regulation of two DNA-damage-inducible genes, MAG1 and DDI1, from Saccharomyces cerevisiae
    Mol Microbiol23, 777-789. PubMed  Europe PubMed