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Subtomogram average of Immature Rotavirus TLP penton
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8co6
Q-score: 0.268
Shah PNM, Gilchrist JB, Forsberg BO, Burt A, Howe A, Mosalaganti S, Wan W, Radecke J, Chaban Y, Sutton G, Stuart DI, Boyce M
Cell Host Microbe (2023) 31 pp. 604-615.e4 [ Pubmed: 36996819 DOI: doi:10.1016/j.chom.2023.03.004 ]
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus A)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus A)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus A)
SPA of Trypsin untreated Rotavirus TLP spike
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8bp8
Q-score: 0.567
Shah PNM, Gilchrist JB, Forsberg BO, Burt A, Howe A, Mosalaganti S, Wan W, Radecke J, Chaban Y, Sutton G, Stuart DI, Boyce M
Cell Host Microbe (2023) 31 pp. 604-615.e4 [ Pubmed: 36996819 DOI: doi:10.1016/j.chom.2023.03.004 ]
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus A)
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus A)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus A)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ogy
Q-score: 0.537
Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH
Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]
- Dna/rna (5'-d(*(gtg))-r(p*gp*c)-3') (1 kDa, Macromolecule from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
- Rna (5'-r(p*ap*gp*cp*c)-3') (1 kDa, RNA from Rotavirus A)
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ogz
Q-score: 0.517
Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH
Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]
- Rna (5'-r(p*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
- Rna (5'-r(p*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Uridine 5'-triphosphate (484 Da, Ligand)
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6oj3
Q-score: 0.3
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6oj4
Q-score: 0.508
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj5
Q-score: 0.076
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj6
Q-score: 0.349
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Transcript (3 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Template (4 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))