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Omicron spike variant BA.1 with Bn03
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 8i4h
Q-score: 0.201
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Ba.1 (Complex from Homo sapiens)
- Bn03 (27 kDa, Protein from Homo sapiens)
- Omicron ba.1 spike with bn03 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (Complex)
Omicron spike variant XBB with Bn03
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 8i4e
Q-score: 0.181
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (27 kDa, Protein from Homo sapiens)
- Xbb (Complex from Homo sapiens)
- Bn03 (Complex)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron spike variant XBB with n3130v-Fc
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8i4f
Q-score: 0.302
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xbb (Complex from Homo sapiens)
- Bn03 (Complex)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- N3130v-fc (42 kDa, Protein from Homo sapiens)
Omicron spike variant BQ.1.1 with n3130v-Fc
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8i4g
Q-score: 0.266
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ DOI: doi:10.1038/s41392-023-01534-0 Pubmed: 37422451 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3130v-fc (Complex)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bq.1.1 (Complex from Homo sapiens)
- N3130v-fc (42 kDa, Protein from Homo sapiens)
Structure of apo Lassa virus polymerase
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6klc
Q-score: 0.362
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Manganese (ii) ion (54 Da, Ligand)
- Lassa virus polymerase (250 kDa, Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Structure of apo Machupo virus polymerase
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 6kld
Q-score: 0.46
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Manganese (ii) ion (54 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Machupo virus polymerase (250 kDa, Complex from Machupo mammarenavirus)
Apo Machupo virus polymerase homodimer
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Machupo virus polymerase (500 kDa, Complex from Machupo mammarenavirus)
- Machupo virus polymerase (Protein from Machupo mammarenavirus)
Monomeric structure of Machupo virus polymerase bound to vRNA promoter
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6kle
Q-score: 0.27
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Rna (5'-r(*gp*cp*cp*up*ap*gp*gp*ap*up*cp*cp*ap*cp*up*gp*up*gp*cp*g)-3') (6 kDa, RNA from synthetic construct)
- Manganese (ii) ion (54 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Machupo virus polymerase bound to vrna promoter (270 kDa, Complex from Machupo mammarenavirus)
Dimeric structure of Machupo virus polymerase bound to vRNA promoter
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6klh
Q-score: 0.321
Peng R, Xu X, Jing J, Wang M, Peng Q, Liu S, Wu Y, Bao X, Wang P, Qi J, Gao GF, Shi Y
Nature (2020) 579 pp. 615-619 [ Pubmed: 32214249 DOI: doi:10.1038/s41586-020-2114-2 ]
- Rna (5'-r(*gp*cp*cp*up*ap*gp*gp*ap*up*cp*cp*ap*cp*up*gp*up*gp*cp*g)-3') (6 kDa, RNA from synthetic construct)
- Manganese (ii) ion (54 Da, Ligand)
- Machupo virus polymerase bound to vrna promoter (540 kDa, Complex from Machupo mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
Structure of LbCas12a-crRNA complex bound to AcrVA4 (form A complex)
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 6kl9
Q-score: 0.434
Peng R, Li Z, Xu Y, He S, Peng Q, Wu LA, Wu Y, Qi J, Wang P, Shi Y, Gao GF
PNAS (2019) 116 pp. 18928-18936 [ DOI: doi:10.1073/pnas.1909400116 Pubmed: 31467167 ]
- Lbcas12a-crrna complex bound to acrva4 (form a complex) (170 kDa, Complex from Lachnospiraceae bacterium)
- Rna (42-mer) (13 kDa, RNA from synthetic construct)
- Lbcas12a (143 kDa, Protein from Lachnospiraceae bacterium)
- Acrva4 (27 kDa, Protein from Moraxella bovoculi)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)