Electron Microscopy Data Bank

EMD-23619

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Sub-tomographic averaged structure of the paracrystalline PFR distal zone in T. brucei

Release date: July 28, 2021
Resolution: 28.5 Å
EM Method: Subtomogram averaging

Zhang J, Wang H, Imhof S, Zhou X, Liao S, Atanasov I, Hui WH, Hill KL, Zhou ZH

Cell Discov (2021) 7 pp. 51-51 [ Pubmed: 34257277 DOI: doi:10.1038/s41421-021-00281-2 ]

Sample:

Sub-tomographic averaged structure of the paracrystalline pfr distal zone in t. brucei (Cellular component from Trypanosoma brucei brucei)

EMD-23620

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Sub-tomographic averaged structure of the central pain complex in T. brucei

Release date: July 28, 2021
Resolution: 28.0 Å
EM Method: Subtomogram averaging

Zhang J, Wang H, Imhof S, Zhou X, Liao S, Atanasov I, Hui WH, Hill KL, Zhou ZH

Cell Discov (2021) 7 pp. 51-51 [ Pubmed: 34257277 DOI: doi:10.1038/s41421-021-00281-2 ]

Sample:

Sub-tomographic averaged structure of the central pain complex in t. brucei (Cellular component from Trypanosoma brucei brucei)

EMD-23621

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A tomogram of the T. brucei flagellum in its bloodstream form

Release date: July 28, 2021
Resolution: 20.424 Å
EM Method: Tomography

Zhang J, Wang H, Imhof S, Zhou X, Liao S, Atanasov I, Hui WH, Hill KL, Zhou ZH

Cell Discov (2021) 7 pp. 51-51 [ Pubmed: 34257277 DOI: doi:10.1038/s41421-021-00281-2 ]

Sample:

A tomogram of the t. brucei flagellum in its bloodstream form (Cellular component from Trypanosoma brucei brucei)

EMD-20012

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T. Brucei Axoneme in bloodstream form revealed by cryo electron tomography with Volta phase plate.

Release date: Dec. 11, 2019
Resolution: 21.0 Å
EM Method: Subtomogram averaging

Imhof S, Zhang J, Wang H, Bui KH, Nguyen H, Atanasov I, Hui WH, Yang SK, Zhou ZH, Hill KL

eLife (2019) 8 [ DOI: doi:10.7554/eLife.52058 Pubmed: 31710293 ]

Sample:

Flagellum skeleton of bloodstream form t.brucei axoneme + paraflafellar rod. (Cellular component from Trypanosoma brucei brucei)

EMD-20013

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T.brucei Axoneme in procyclic form revealed by cryo electron tomography with Volta phase plate.

Release date: Dec. 11, 2019
Resolution: 35.0 Å
EM Method: Subtomogram averaging

Imhof S, Zhang J, Wang H, Bui KH, Nguyen H, Atanasov I, Hui WH, Yang SK, Zhou ZH, Hill KL

eLife (2019) 8 [ DOI: doi:10.7554/eLife.52058 Pubmed: 31710293 ]

Sample:

Flagellum skeleton of procyclic form t.brucei axoneme + paraflafellar rod. (Cellular component from Trypanosoma brucei brucei)

EMD-20014

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T. Brucei Axoneme in DRC11-knockdown procyclic form revealed by cryo electron tomography with Volta phase plate.

Release date: Dec. 11, 2019
Resolution: 35.6 Å
EM Method: Subtomogram averaging

Imhof S, Zhang J, Wang H, Bui KH, Nguyen H, Atanasov I, Hui WH, Yang SK, Zhou ZH, Hill KL

eLife (2019) 8 [ DOI: doi:10.7554/eLife.52058 Pubmed: 31710293 ]

Sample:

Flagellum skeleton of drc11-knockdown procyclic form t.brucei axoneme + paraflafellar rod. (Cellular component from Trypanosoma brucei brucei)

EMD-20059

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In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state

Release date: May 22, 2019
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ogy
Q-score: 0.537

Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH

Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]

Sample:

Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
Dna/rna (5'-d(*(gtg))-r(p*gp*c)-3') (1 kDa, Macromolecule from Rotavirus A)
Rna (5'-r(p*ap*gp*cp*c)-3') (1 kDa, RNA from Rotavirus A)
Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
Rotavirus a (Virus from Rotavirus A)

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EMD-20060

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In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state

Release date: May 22, 2019
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ogz
Q-score: 0.517

Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH

Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]

Sample:

Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
Rna (5'-r(p*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
Rna (5'-r(p*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
Rotavirus a (Virus from Rotavirus A)
Guanosine-5'-triphosphate (523 Da, Ligand)
Uridine 5'-triphosphate (484 Da, Ligand)

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EMD-9328

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Pre-fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate

Release date: Nov. 28, 2018
Resolution: 21.6 Å
EM Method: Subtomogram averaging

Si Z, Zhang J, Shivakoti S, Atanasov I, Tao CL, Hui WH, Zhou K, Yu X, Li W, Luo M, Bi GQ, Zhou ZH

PLoS Pathog (2018) 14 pp. e1007452-e1007452 [ DOI: doi:10.1371/journal.ppat.1007452 Pubmed: 30507948 ]

Sample:

Human herpesvirus 5 strain ad169 (300 kDa, Virus from Human herpesvirus 5 strain AD169)

EMD-9329

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Post-fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate

Release date: Nov. 28, 2018
Resolution: 26.0 Å
EM Method: Subtomogram averaging

Si Z, Zhang J, Shivakoti S, Atanasov I, Tao CL, Hui WH, Zhou K, Yu X, Li W, Luo M, Bi GQ, Zhou ZH

PLoS Pathog (2018) 14 pp. e1007452-e1007452 [ DOI: doi:10.1371/journal.ppat.1007452 Pubmed: 30507948 ]

Sample:

Human herpesvirus 5 strain ad169 (300 kDa, Virus from Human herpesvirus 5 strain AD169)

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