Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Structure of double-stranded target DNA engaged Csy complex from Pseudomonas aeruginosa (PA-14)
Rollins MF, Chowdhury S, Carter J, Golden SM, Miettinen HM, Santiago-Frangos A, Faith D, Lawrence MC, Wiedenheft B, Lander GC
Mol Cell (2019) [ DOI: doi:10.1016/j.molcel.2019.02.001 ]
- Crispr target dna (44-mer) (13 kDa, DNA from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Non-complementary r-loop dna strand (10 kDa, DNA from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Double-stranded target dna engaged csy complex from pseudomonas aeruginosa (pa-14) (360 kDa, Complex from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa UCBPP-PA14)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5xlo
Q-score: 0.337
Peng R, Xu Y, Zhu T, Li N, Qi J, Chai Y, Wu M, Zhang X, Shi Y, Wang P, Wang J, Gao N, Gao GF
Cell Res (2017) 27 pp. 853-864 [ DOI: doi:10.1038/cr.2017.79 Pubmed: 28574055 ]
- Uncharacterized protein acrf1 (8 kDa, Protein from Pseudomonas phage JBD30)
- Crispr-associated protein csy3 (Complex)
- Crrna with 32nt spacer sequence (19 kDa, RNA from Pseudomonas aeruginosa)
- Acrf1 (Complex)
- Crrna with 20nt spacer sequence (Complex)
- Anti-crispr proteins acrf1/2 bound to csy surveillance complex with a 32nt spacer crrna backbone region (400 kDa, Complex from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5xlp
Q-score: 0.26
Peng R, Xu Y, Zhu T, Li N, Qi J, Chai Y, Wu M, Zhang X, Shi Y, Wang P, Wang J, Gao N, Gao GF
Cell Res (2017) 27 pp. 853-864 [ DOI: doi:10.1038/cr.2017.79 Pubmed: 28574055 ]
- Uncharacterized protein acrf1 (8 kDa, Protein from Pseudomonas phage JBD30)
- Rna (Complex)
- Acrf1 (Complex)
- Crrna with 20nt spacer sequence (15 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Anti-crispr proteins acrf1/2 bound to csy surveillance complex with a 20nt spacer sequence backbone region (300 kDa, Complex from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Man crispr-associated protein csy3 (Complex)
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound target dsDNA
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6b44
Q-score: 0.478
Guo TW, Bartesaghi A, Yang H, Falconieri V, Rao P, Merk A, Eng ET, Raczkowski AM, Fox T, Earl LA, Patel DJ, Subramaniam S
Cell (2017) 171 pp. 414-426.e12 [ DOI: doi:10.1016/j.cell.2017.09.006 Pubmed: 28985564 ]
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Target dna strand (41-mer) (15 kDa, DNA from synthetic construct)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Non-target dna strand (5'-d(p*cp*ap*gp*tp*cp*ap*tp*cp*ap*cp*cp*ap*a)-3') (8 kDa, DNA from synthetic construct)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Type i-f crispr crrna-guided csy surveillance complex with bound target dsdna (350 kDa, Complex from Pseudomonas aeruginosa)
- Pseudomonas aeruginosa strain smc4485 crispr repeat sequence (19 kDa, RNA from Pseudomonas aeruginosa)
Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6b45
Q-score: 0.413
Guo TW, Bartesaghi A, Yang H, Falconieri V, Rao P, Merk A, Eng ET, Raczkowski AM, Fox T, Earl LA, Patel DJ, Subramaniam S
Cell (2017) 171 pp. 414-426.e12 [ DOI: doi:10.1016/j.cell.2017.09.006 Pubmed: 28985564 ]
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Type i-f crispr crrna-guided csy surveillance complex (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Pseudomonas aeruginosa strain smc4485 crispr repeat sequence (19 kDa, RNA from Pseudomonas aeruginosa)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6b46
Q-score: 0.487
Guo TW, Bartesaghi A, Yang H, Falconieri V, Rao P, Merk A, Eng ET, Raczkowski AM, Fox T, Earl LA, Patel DJ, Subramaniam S
Cell (2017) 171 pp. 414-426.e12 [ DOI: doi:10.1016/j.cell.2017.09.006 Pubmed: 28985564 ]
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Type i-f crispr crrna-guided csy surveillance complex with bound anti-crispr protein acrf1 (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Anti-crispr protein acrf1 (8 kDa, Protein from Pseudomonas phage JBD30)
- Pseudomonas aeruginosa strain smc4485 crispr repeat sequence (19 kDa, RNA from Pseudomonas aeruginosa)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6b47
Q-score: 0.425
Guo TW, Bartesaghi A, Yang H, Falconieri V, Rao P, Merk A, Eng ET, Raczkowski AM, Fox T, Earl LA, Patel DJ, Subramaniam S
Cell (2017) 171 pp. 414-426.e12 [ DOI: doi:10.1016/j.cell.2017.09.006 Pubmed: 28985564 ]
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Type i-f crispr crrna-guided csy surveillance complex with bound anti-crispr protein acrf2 (350 kDa, Complex from Pseudomonas aeruginosa)
- Anti-crispr protein acrf2 (10 kDa, Protein from Pseudomonas phage D3112)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Pseudomonas aeruginosa strain smc4485 crispr repeat sequence (19 kDa, RNA from Pseudomonas aeruginosa)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6b48
Q-score: 0.41
Guo TW, Bartesaghi A, Yang H, Falconieri V, Rao P, Merk A, Eng ET, Raczkowski AM, Fox T, Earl LA, Patel DJ, Subramaniam S
Cell (2017) 171 pp. 414-426.e12 [ DOI: doi:10.1016/j.cell.2017.09.006 Pubmed: 28985564 ]
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Pseudomonas aeruginosa strain smc4485 crispr repeat sequence (19 kDa, RNA from Pseudomonas aeruginosa)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Type i-f crispr crrna-guided csy surveillance complex with bound anti-crispr protein acrf10 (350 kDa, Complex from Pseudomonas aeruginosa)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Anti-crispr protein acrf10 (11 kDa, Protein from Shewanella xiamenensis)
Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B
Cell (2017) 169 pp. 47-57.e11 [ Pubmed: 28340349 DOI: doi:10.1016/j.cell.2017.03.012 ]
- Anti-crispr protein acr30-35 (8 kDa, Protein from Pseudomonas phage JBD30)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Anti-crisprs acrf1 and acrf2 bound p. aeruginosa crrna-guided crispr surveillance(csy)complex. (450 kDa, Complex from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa UCBPP-PA14)
- Anti-crispr protein 30 (10 kDa, Protein from Pseudomonas phage D3112)