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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND citation_journal_name:"TO BE PUBLISHED" AND natural_source_ncbi_code:"9615"

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EMD-19195

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Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Release date: Jan. 24, 2024
Resolution: 2.69243 Å
EM Method: Single-particle
Fitted PDBs: 8rjb
Q-score: 0.608

Lewis AJO, Hegde RS

To Be Published

Sample:

60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l13 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Nascent chain (23 kDa, Protein from Bos taurus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el30 (12 kDa, Protein from Oryctolagus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
P-site trna (24 kDa, RNA from Sus scrofa)
Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein l26 (21 kDa, Protein from Oryctolagus cuniculus)
El40 (11 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)

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EMD-19197

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Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Release date: Jan. 24, 2024
Resolution: 2.90061 Å
EM Method: Single-particle
Fitted PDBs: 8rjc
Q-score: 0.568

Lewis AJO, Hegde RS

To Be Published

Sample:

60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l13 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Nascent chain (23 kDa, Protein from Bos taurus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit gamma (21 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
Calnexin (67 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus)
60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
P-site trna (24 kDa, RNA from Sus scrofa)
Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
El40 (11 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)

[Show more]

EMD-19198

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Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Release date: Jan. 24, 2024
Resolution: 2.78574 Å
EM Method: Single-particle
Fitted PDBs: 8rjd

Lewis AJO, Hegde RS

To Be Published

Sample:

60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
Nascent chain (23 kDa, Protein from Bos taurus)
28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el30 (12 kDa, Protein from Oryctolagus)
60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit gamma (21 kDa, Protein from Canis lupus familiaris)
Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
Calnexin (67 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein ul23 n-terminal domain-containing protein (17 kDa, Protein from Oryctolagus)
Ribosomal protein l26 (17 kDa, Protein from Oryctolagus)
60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
P-site trna (24 kDa, RNA from Sus scrofa)
Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus)
5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
El40 (11 kDa, Protein from Oryctolagus cuniculus)
Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: