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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND citation_journal_name:"TO BE PUBLISHED" AND natural_source_ncbi_code:"11676"
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
To Be Published
Sample:
- Transframe peptide (993 Da, Protein from Human immunodeficiency virus 1)
- Antigen peptide transporter 1 (81 kDa, Protein from Homo sapiens)
- Antigen peptide transporter 2 (75 kDa, Protein from Homo sapiens)
- Transporter associated with antigen processing bound to the 9-mer peptide ilkepvhgv (156 kDa, Complex from Homo sapiens)
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody FP3
Cottrell CA, Pratap PP, Ward AB
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Fp3 heavy chain (11 kDa, Protein from Macaca mulatta)
- Fp3 light chain (8 kDa, Protein from Macaca mulatta)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Fp3 heavy chain, fp3 light chain (Complex from Macaca mulatta)
- Bg505 boost 2 in complex with nhp polyclonal antibody fp3 (470 kDa, Complex)
- Surface protein gp120, transmembrane protein gp41 (Complex from Human immunodeficiency virus 1)
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody N289
Cottrell CA, Pratap PP, Ward AB
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 boost 2 in complex with nhp polyclonal antibody n289 (470 kDa, Complex)
- N289 heavy chain (9 kDa, Protein from Macaca mulatta)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- N289 light chain (8 kDa, Protein from Macaca mulatta)
- N289 heavy chain, n289 light chain (Complex from Macaca mulatta)
- Surface protein gp120, transmembrane protein gp41 (Complex from Human immunodeficiency virus 1)
BG505 GT1.1 SOSIP in complex with NHP Fabs 21N13, 21M20 and RM20A3
Release date: May 29, 2024
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8sw4
Q-score: 0.567
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8sw4
Q-score: 0.567
Caniels T, Ozorowski G, Ward AB, Sanders RW
To Be Published
Sample:
- Rm20a3 light chain variable region (11 kDa, Protein from Macaca)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rm20a3 heavy chain variable region (13 kDa, Protein from Macaca)
- Bg505 gt1.1 sosip in complex with 21n13 fab, 21m20 fab and rm20a3 fab (770 kDa, Complex from Macaca)
- 21m20 heavy chain variable region (13 kDa, Protein from Macaca)
- 21n13 light chain variable region (11 kDa, Protein from Macaca)
- 21m20 light chain variable region (11 kDa, Protein from Macaca)
- Bg505 gt1.1 sosip gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- 21n13 heavy chain variable region (14 kDa, Protein from Macaca)
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF1
Cottrell CA, Pratap PP, Ward AB
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- If1 light chain (8 kDa, Protein from Macaca mulatta)
- If1 heavy chain, if1 light chain (Complex from Macaca mulatta)
- If1 heavy chain (10 kDa, Protein from Macaca mulatta)
- Surface protein gp120, transmembrane protein gp41 (Complex from Human immunodeficiency virus 1)
- Bg505 boost 2 in complex with nhp polyclonal antibody if1 (470 kDa, Complex)
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody IF3
Cottrell CA, Pratap PP, Ward AB
To Be Published
Sample:
- Nhp polyclonal antibody if3 light chain (9 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Nhp polyclonal antibody if3 heavy chain, nhp polyclonal antibody if3 light chain (Complex from Macaca mulatta)
- Surface protein gp120, transmembrane protein gp41 (Complex from Human immunodeficiency virus 1)
- Nhp polyclonal antibody if3 heavy chain (9 kDa, Protein from Macaca mulatta)
- Bg505 boost 2 in complex with nhp polyclonal antibody if3 (470 kDa, Complex)
BG505 Boost2 SOSIP.664 in complex with NHP polyclonal antibody Base4
Cottrell CA, Pratap PP, Ward AB
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 boost 2 in complex with nhp polyclonal antibody base4 (470 kDa, Complex)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Base4 heavy chain (9 kDa, Protein from Macaca mulatta)
- Surface protein gp120, transmembrane protein gp41 (Complex from Human immunodeficiency virus 1)
- Base4 light chain (7 kDa, Protein from Macaca mulatta)
- Base4 heavy chain, base4 light chain (Complex from Macaca mulatta)
Release date: Jan. 3, 2024
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 8u1d
Q-score: 0.359
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 8u1d
Q-score: 0.359
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dh1285 light chain (25 kDa, Protein from Macaca mulatta)
- Envelope glycoprotein gp120 (72 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp120 (Complex from Human immunodeficiency virus 1)
- Dh1285 heavy chain (26 kDa, Protein from Macaca mulatta)
- Dh1285 heavy chain, dh1285 light chain (Complex from Macaca mulatta)
- The complex of vaccine elicited cd4 binding site neutralizing antibody dh1285 fab with ch505m5chimer.6r.sosip.664v4.1 env (308 kDa, Complex)
Release date: Aug. 16, 2023
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7t9t
Q-score: 0.382
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7t9t
Q-score: 0.382
To Be Published
Sample:
- Envelope glycoprotein gp160 (51 kDa, Protein from Human immunodeficiency virus 1)
- Trimeric hiv-1 env in complex with ch235.12 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Ch235.12 fab light chain (23 kDa, Protein from Homo sapiens)
- Ch235.12 fab heavy chain (24 kDa, Protein from Homo sapiens)
Release date: Aug. 2, 2023
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7tcn
Q-score: 0.346
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7tcn
Q-score: 0.346
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Trimeric hiv-1 env in complex with ch235.12 (Complex from Human immunodeficiency virus 1)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Ch235.12 fab light chain (23 kDa, Protein from Homo sapiens)
- Glycoprotein 41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Ch235.12 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (54 kDa, Protein from Human immunodeficiency virus 1)