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initial_angle_assignment_type:"MAXIMUM LIKELIHOOD" AND xref_links:"pdb" AND assembly_molecular_weight:{2000000 TO 5000000] AND author_name:"Hegde RS"
Release date: Jan. 24, 2024
Resolution: 2.69243 Å
EM Method: Single-particle
Fitted PDBs: 8rjb
Q-score: 0.608
Resolution: 2.69243 Å
EM Method: Single-particle
Fitted PDBs: 8rjb
Q-score: 0.608
To Be Published
Sample:
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (23 kDa, Protein from Bos taurus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Oryctolagus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Sus scrofa)
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l26 (21 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)
Release date: Jan. 24, 2024
Resolution: 2.90061 Å
EM Method: Single-particle
Fitted PDBs: 8rjc
Q-score: 0.568
Resolution: 2.90061 Å
EM Method: Single-particle
Fitted PDBs: 8rjc
Q-score: 0.568
To Be Published
Sample:
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (23 kDa, Protein from Bos taurus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit gamma (21 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Calnexin (67 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Sus scrofa)
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)
To Be Published
Sample:
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Stress-associated endoplasmic reticulum protein (7 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- Large ribosomal subunit protein ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (23 kDa, Protein from Bos taurus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Oryctolagus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit gamma (21 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Calnexin (67 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul23 n-terminal domain-containing protein (17 kDa, Protein from Oryctolagus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Sus scrofa)
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Oryctolagus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to sec61, the trap complex, and ramp4 (Complex from Canis lupus familiaris)
Release date: July 5, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bpo
Q-score: 0.549
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bpo
Q-score: 0.549
Hopfler M, Absmeier E, Peak-Chew SY, Vartholomaiou E, Passmore LA, Gasic I, Hegde RS
Mol Cell (2023) 83 pp. 2290- [ DOI: doi:10.1016/j.molcel.2023.05.020 Pubmed: 37295431 ]
Sample:
- 60s ribosomal protein l27 (15 kDa, Protein from rabbit)
- Ubiquitin-60s ribosomal protein l40 (11 kDa, Protein from rabbit)
- 60s ribosomal protein l28 (15 kDa, Protein from rabbit)
- Ribosomal protein l3 (46 kDa, Protein from rabbit)
- Ribosomal protein l10 (24 kDa, Protein from rabbit)
- 60s ribosomal protein l19 (23 kDa, Protein from rabbit)
- 60s ribosomal protein l14 (23 kDa, Protein from rabbit)
- Ribosomal protein l15 (24 kDa, Protein from rabbit)
- 60s ribosomal protein l23 (14 kDa, Protein from rabbit)
- 60s ribosomal protein l37a (10 kDa, Protein from rabbit)
- 60s ribosomal protein l36 (12 kDa, Protein from rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l37 (11 kDa, Protein from rabbit)
- 60s ribosomal protein l36a-like (12 kDa, Protein from rabbit)
- 60s ribosomal protein l4 (47 kDa, Protein from rabbit)
- 60s ribosomal protein l35 (14 kDa, Protein from rabbit)
- 60s ribosomal protein l13 (24 kDa, Protein from rabbit)
- 60s ribosomal protein l17 (21 kDa, Protein from rabbit)
- Ribosomal protein l18 (21 kDa, Protein from rabbit)
- 60s ribosomal protein l30 (12 kDa, Protein from rabbit)
- 60s ribosomal protein l7a (36 kDa, Protein from rabbit)
- 60s ribosomal protein l12 (17 kDa, Protein from rabbit)
- Ribosomal protein l32 (15 kDa, Protein from rabbit)
- Ribosomal protein l26 (17 kDa, Protein from rabbit)
- Rabbit 80s ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (ttc5) and s-phase cyclin a associated protein residing in the er (scaper) (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from rabbit)
- 60s ribosomal protein l7 (29 kDa, Protein from rabbit)
- 60s ribosomal protein l9 (21 kDa, Protein from rabbit)
- 60s ribosomal protein l18a (20 kDa, Protein from rabbit)
- 5s ribosomal rna (38 kDa, RNA from rabbit)
- 60s ribosomal protein l21 (18 kDa, Protein from rabbit)
- 60s ribosomal protein l22 (14 kDa, Protein from rabbit)
- 60s ribosomal protein l38 (8 kDa, Protein from rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from rabbit)
- 60s ribosomal protein l39-like (6 kDa, Protein from rabbit)
- Tetratricopeptide repeat protein 5 (54 kDa, Protein from Homo sapiens)
- 5.8s ribosomal rna (50 kDa, RNA from rabbit)
- 60s ribosomal protein l8 (28 kDa, Protein from rabbit)
- 60s ribosomal protein l11 (20 kDa, Protein from rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from rabbit)
- 60s ribosomal protein l31 (14 kDa, Protein from rabbit)
- Nascent polypeptide-associated complex subunit alpha n-terminal region (2 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from rabbit)
- 60s ribosomal protein l13a (23 kDa, Protein from rabbit)
- 60s ribosomal protein l34 (13 kDa, Protein from rabbit)
- Tubulin beta chain (7 kDa, Protein from Homo sapiens)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from rabbit)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from rabbit)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from rabbit)
- S phase cyclin a-associated protein in the endoplasmic reticulum (159 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l27a (16 kDa, Protein from rabbit)
- Ribosomal protein l24 (17 kDa, Protein from rabbit)
Release date: Oct. 19, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7tm3
Q-score: 0.434
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7tm3
Q-score: 0.434
Smalinskaite L, Kim MK, Lewis AJO, Keenan RJ, Hegde RS
Nature (2022) 611 pp. 161-166 [ Pubmed: 36261528 DOI: doi:10.1038/s41586-022-05336-2 ]
Sample:
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (23 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome translating a stalled, two-tmd nascent chain (derived from rhodopsin), and bound to components of the multi-pass translocon (Complex)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Pat complex subunit asterix (12 kDa, Protein from Canis lupus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Transmembrane protein 147 (25 kDa, Protein from Canis lupus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Nicalin (63 kDa, Protein from Canis lupus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Coiled-coil domain containing 47 (55 kDa, Protein from Canis lupus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 gamma (7 kDa, Protein from Canis lupus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
Release date: Oct. 19, 2022
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7tut
Q-score: 0.325
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7tut
Q-score: 0.325
Smalinskaite L, Kim MK, Lewis AJO, Keenan RJ, Hegde RS
Nature (2022) 611 pp. 161-166 [ DOI: doi:10.1038/s41586-022-05336-2 Pubmed: 36261528 ]
Sample:
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El14 (23 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 gamma (7 kDa, Protein from Canis lupus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Transmembrane protein 147 (25 kDa, Protein from Canis lupus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Pat complex subunit asterix (12 kDa, Protein from Canis lupus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- Obligate partner of tmco1 insertase (14 kDa, Protein from Canis lupus)
- 80s ribosome translating a stalled, four-tmd nascent chain (derived from rhodopsin), and bound to components of the multi-pass translocon (Complex)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (28 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- Calcium load-activated calcium channel (21 kDa, Protein from Canis lupus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (20 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- El35 (14 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Coiled-coil domain containing 47 (55 kDa, Protein from Canis lupus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Nicalin (63 kDa, Protein from Canis lupus)
- El23 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (46 kDa, Protein from Oryctolagus cuniculus)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome stalled on a poly(A) tail
Release date: Dec. 4, 2019
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Chandrasekaran V, Juszkiewicz S, Choi J, Puglisi JD, Brown A, Shao S, Ramakrishnan V, Hegde RS
Nat Struct Mol Biol (2019) 26 pp. 1132-1140 [ Pubmed: 31768042 DOI: doi:10.1038/s41594-019-0331-x ]
Sample:
- El34 (13 kDa, Protein from Rabbit)
- Us14 (6 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- Ribosomal protein s27a (18 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Polya mrna (3 kDa, RNA from Homo sapiens)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Rabbit)
- Es19 (16 kDa, Protein from Rabbit)
- Trna (lys3) (24 kDa, RNA from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (14 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- El31 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (22 kDa, Protein from Rabbit)
- Wd_repeats_region domain-containing protein (35 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- Spermidine (145 Da, Ligand)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Poly-lysine nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Es13 (17 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- Polya mrna (Complex from Homo sapiens)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)
- Us5 (26 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (28 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- Rabbit 80s ribosome stalled on polya mrna (4 MDa, Complex)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Rabbit)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosomal_l28e domain-containing protein (15 kDa, Protein from Rabbit)
- Ribosomal_s13_n domain-containing protein (17 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Rabbit)
- S10_plectin domain-ontaining protein (18 kDa, Protein from Rabbit)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Rabbit)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Rabbit)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Rabbit)
- Ul22 (21 kDa, Protein from Rabbit)
- Trash domain-containing protein (17 kDa, Protein from Rabbit)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Release date: Nov. 27, 2019
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 6t59
Q-score: -0.068
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 6t59
Q-score: -0.068
Lin Z, Gasic I, Chandrasekaran V, Peters N, Shao S, Mitchison TJ, Hegde RS
Science (2020) 367 pp. 100-104 [ Pubmed: 31727855 DOI: doi:10.1126/science.aaz4352 ]
Sample:
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Rabbit)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Rabbit)
- Rabbit 80s ribosome synthesizing beta-tubulin in complex with ttc5 (4 MDa, Complex)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ul6 (21 kDa, Protein from Rabbit)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Transcription factor btf3 (22 kDa, Protein from Oryctolagus cuniculus)
- Tetratricopeptide repeat protein 5 (48 kDa, Protein from Homo sapiens)
- El29 (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- El34 (13 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Rabbit)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Tubulin beta (7 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- Nascent polypeptide-associated complex subunit alpha n-terminal region (2 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Rabbit)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Tetratricopeptide repeat protein 5 (Complex from Homo sapiens)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Release date: Oct. 17, 2018
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6hcf
Q-score: 0.425
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6hcf
Q-score: 0.425
Juszkiewicz S, Chandrasekaran V, Lin Z, Kraatz S, Ramakrishnan V, Hegde RS
Mol Cell (2018) 72 pp. 469-481.e7 [ DOI: doi:10.1016/j.molcel.2018.08.037 Pubmed: 30293783 ]
Sample:
- Us3 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Atp binding cassette subfamily e member 1 (67 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Erf1(aaq) (49 kDa, Protein from Homo sapiens)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Mrna (7 kDa, RNA from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Iron/sulfur cluster (351 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (1 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Oryctolagus cuniculus)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (Complex from Homo sapiens)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome stalled on globin mrna at the stop codon (4 MDa, Complex)
- Ribosome (Complex from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Release date: Oct. 17, 2018
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6hcj
Q-score: 0.335
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6hcj
Q-score: 0.335
Juszkiewicz S, Chandrasekaran V, Lin Z, Kraatz S, Ramakrishnan V, Hegde RS
Mol Cell (2018) 72 pp. 469-481.e7 [ DOI: doi:10.1016/j.molcel.2018.08.037 Pubmed: 30293783 ]
Sample:
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul1 (24 kDa, Protein from Rabbit)
- Mrna (6 kDa, RNA from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (28 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- P/e trna (24 kDa, RNA from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (22 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- A/p rna (23 kDa, RNA from Oryctolagus cuniculus)
- Es10 (18 kDa, Protein from Rabbit)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- El30 (12 kDa, Protein from Rabbit)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- Ul30 (29 kDa, Protein from Rabbit)
- Nascent chain (1 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Rabbit)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome translating globin mrna in the rotated state with a/p and p/e trnas (4 MDa, Complex from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us3 (26 kDa, Protein from Rabbit)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Rabbit)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Rabbit)
- El34 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Rabbit)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (14 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- Ul22 (21 kDa, Protein from Rabbit)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Rabbit)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)