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The reconstruction of biotin-bound streptavidin at 3.2 Angstrom resolution
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6j6j
Q-score: 0.517
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Streptavidin with biotin (52 kDa, Complex from Streptomyces avidinii)
- Water (18 Da, Ligand)
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
- Biotin (244 Da, Ligand)
The reconstruction of apo-state streptavidin at 3.3 Angstrom resolution
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6j6k
Q-score: 0.497
Fan X, Wang J, Zhang X, Yang Z, Zhang JC, Zhao L, Peng HL, Lei J, Wang HW
Nat Commun (2019) 10 pp. 2386-2386 [ Pubmed: 31160591 DOI: doi:10.1038/s41467-019-10368-w ]
- Streptavidin (12 kDa, Protein from Streptomyces avidinii)
- Streptavidin (52 kDa, Complex from Streptomyces avidinii)
Structure of the human frataxin-bound iron-sulfur cluster assembly complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6nzu
Q-score: 0.546
Fox NG, Yu X, Feng X, Bailey HJ, Martelli A, Nabhan JF, Strain-Damerell C, Bulawa C, Yue WW, Han S
Nat Commun (2019) 10 pp. 2210-2210 [ Pubmed: 31101807 DOI: doi:10.1038/s41467-019-09989-y ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Frataxin, mitochondrial (14 kDa, Protein from Homo sapiens)
- Lyr motif-containing protein 4 (10 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- The human frataxin-bound iron-sulfur cluster assembly complex (186 kDa, Complex from Homo sapiens)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
- Cysteine desulfurase, mitochondrial (44 kDa, Protein from Homo sapiens)
- Iron-sulfur cluster assembly enzyme iscu, mitochondrial (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of the centromeric nucleosome with native alpha satellite DNA
Resolution: 3.395 Å
EM Method: Single-particle
Fitted PDBs: 6o1d
Q-score: 0.482
Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P
Nat Commun (2019) 10 pp. 2301-2301 [ DOI: doi:10.1038/s41467-019-10247-4 Pubmed: 31127102 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Cenp-a nucleosome with native alpha satellite dna sequence (Complex from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from Homo sapiens)
- Histone h3-like centromeric protein a (18 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
CryoEM Density of Acetylated Microtubules
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2q
Q-score: 0.428
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Acetylated microtubule (Tissue from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2r
Q-score: 0.461
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Deacetylated microtubule (Tissue from Sus scrofa)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
Cryo-EM structure of nucleosome in complex with a single chain antibody fragment
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6dzt
Q-score: 0.589
Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P
Nat Commun (2019) 10 pp. 2301-2301 [ DOI: doi:10.1038/s41467-019-10247-4 Pubmed: 31127102 ]
- Histone h3 (15 kDa, Protein from Drosophila melanogaster)
- Scfv (29 kDa, Protein from Mus musculus)
- Nucleosome-antibody complex (Complex from Drosophila melanogaster)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h4 (11 kDa, Protein from Drosophila melanogaster)
- Histone h2a (13 kDa, Protein from Drosophila melanogaster)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h2b (13 kDa, Protein from Drosophila melanogaster)
Cryo-EM structure of the CENP-A nucleosome (W601) in complex with a single chain antibody fragment
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 6e0c
Q-score: 0.59
Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P
Nat Commun (2019) 10 pp. 2301-2301 [ DOI: doi:10.1038/s41467-019-10247-4 Pubmed: 31127102 ]
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Scfv (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3-like centromeric protein a (18 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from Escherichia coli)
- Cenp-a nucleosome (w601) complex (Complex from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from Escherichia coli)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6e0p
Q-score: 0.57
Zhou BR, Yadav KNS, Borgnia M, Hong J, Cao B, Olins AL, Olins DE, Bai Y, Zhang P
Nat Commun (2019) 10 pp. 2301-2301 [ DOI: doi:10.1038/s41467-019-10247-4 Pubmed: 31127102 ]
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Scfv (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Cenp-a nucleosome and antibody complex (Complex from Homo sapiens)
- Histone h3-like centromeric protein a (18 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jb1
Q-score: 0.406
Ding D, Wang M, Wu JX, Kang Y, Chen L
Cell Rep (2019) 27 pp. 1848-1857.e4 [ DOI: doi:10.1016/j.celrep.2019.04.050 Pubmed: 31067468 ]
- Repaglinide (452 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Atp-binding cassette sub-family c member 8 isoform x2 (177 kDa, Protein from Mesocricetus auratus)
- Atp-sensitive inward rectifier potassium channel 11 (43 kDa, Protein from Mus musculus)
- Phosphatidylethanolamine (734 Da, Ligand)
- Digitonin (1 kDa, Ligand)
- Katp (Complex from Mus musculus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)