Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
In situ structure of polymerase complex of mammalian reovirus in the elongation state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7yed
Q-score: 0.498
Bao K, Zhang X, Li D, Sun W, Sun Z, Wang J, Zhu P
PNAS (2022) 119 pp. e2203054119-e2203054119 [ Pubmed: 36469786 DOI: doi:10.1073/pnas.2203054119 ]
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3)
- Rna helicase (141 kDa, Protein from Mammalian orthoreovirus 3)
- Rna (5'-r(p*up*up*up*ap*ap*ap*ap*ap*up*up*up*up*ap*ap*ap*ap*up*ap*ap*up*u)-3') (6 kDa, RNA from Mammalian orthoreovirus 3)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (36-mer) (11 kDa, RNA from Mammalian orthoreovirus 3)
- Mu-2 protein (83 kDa, Protein from Mammalian orthoreovirus 3)
- Rna (Complex)
- Mammalian orthoreovirus 3 (Virus from Mammalian orthoreovirus 3)
- Mammalian orthoreovirus 3 (Complex)
- Lambda-2 protein (143 kDa, Protein from Mammalian orthoreovirus 3)
- Zinc ion (65 Da, Ligand)
- S-adenosylmethionine (398 Da, Ligand)
- Uridine 5'-triphosphate (484 Da, Ligand)
In situ structure of polymerase complex of mammalian reovirus in virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yfe
Q-score: 0.422
Bao K, Zhang X, Li D, Sun W, Sun Z, Wang J, Zhu P
PNAS (2022) 119 pp. e2203054119-e2203054119 [ Pubmed: 36469786 DOI: doi:10.1073/pnas.2203054119 ]
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3)
- Rna helicase (141 kDa, Protein from Mammalian orthoreovirus 3)
- Mammalian orthoreovirus 3 (Virus)
- Rna (5'-r(p*ap*cp*gp*ap*up*up*ap*gp*c)-3') (2 kDa, RNA from Mammalian orthoreovirus 3)
- Rna (5'-r(p*gp*cp*u)-3') (911 Da, RNA from Mammalian orthoreovirus 3)
- Mu-2 protein (83 kDa, Protein from Mammalian orthoreovirus 3)
- Rna (Complex)
- Lambda-2 protein (143 kDa, Protein from Mammalian orthoreovirus 3)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*ap*up*cp*gp*u)-3') (1 kDa, RNA from Mammalian orthoreovirus 3)
- Mammalian orthoreovirus 3 (Complex from Mammalian orthoreovirus 3)
Golden Shiner Reovirus Core Polar Vertex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8fjk
Q-score: 0.467
Stevens A, Cui Y, Shivakoti S, Zhou ZH
Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]
- Rna (52-mer) (16 kDa, RNA from Golden shiner reovirus)
- Major inner capsid protein vp3 (9 kDa, Protein from AQRV-C)
- Rna (60-mer) (19 kDa, RNA from Golden shiner reovirus)
- Major inner capsid protein vp3 (124 kDa, Protein from Golden shiner reovirus)
- Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)
- Outer capsid protein vp1 (141 kDa, Protein from AQRV-C)
- Rna (18-mer) (5 kDa, RNA from Golden shiner reovirus)
- Rna (38-mer) (12 kDa, RNA from Golden shiner reovirus)
- Rna (30-mer) (9 kDa, RNA from Golden shiner reovirus)
- Rna (40-mer) (12 kDa, RNA from Golden shiner reovirus)
- Rna-directed rna polymerase vp2 (141 kDa, Protein from Golden shiner reovirus)
- Zinc ion (65 Da, Ligand)
- Microtubule-associated protein vp5 (79 kDa, Protein from Golden shiner reovirus)
- Clamp protein vp6 (44 kDa, Protein from AQRV-C)
Golden Shiner Reovirus Core Tropical Vertex
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8fjl
Q-score: 0.465
Stevens A, Cui Y, Shivakoti S, Zhou ZH
Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]
- Rna (52-mer) (16 kDa, RNA from Golden shiner reovirus)
- Outer capsid protein vp1 (141 kDa, Protein from Golden shiner reovirus)
- Clamp protein vp6 (44 kDa, Protein from Golden shiner reovirus)
- Rna (60-mer) (19 kDa, RNA from Golden shiner reovirus)
- Major inner capsid protein vp3 (124 kDa, Protein from Golden shiner reovirus)
- Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)
- Major inner capsid protein vp3 (9 kDa, Protein from Golden shiner reovirus)
- Rna (38-mer) (8 kDa, RNA from Golden shiner reovirus)
- Rna (39-mer) (12 kDa, RNA from Golden shiner reovirus)
- Rna-directed rna polymerase vp2 (141 kDa, Protein from Golden shiner reovirus)
- Zinc ion (65 Da, Ligand)
- Microtubule-associated protein vp5 (79 kDa, Protein from Golden shiner reovirus)
- Rna (30-mer) (12 kDa, RNA from Golden shiner reovirus)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7elh
Q-score: 0.478
Pan M, Alvarez-Cabrera AL, Kang JS, Wang L, Fan C, Zhou ZH
Nat Commun (2021) 12 pp. 4176-4176 [ DOI: doi:10.1038/s41467-021-24455-4 Pubmed: 34234134 ]
- Minor core protein mu2 (83 kDa, Protein from Mammalian orthoreovirus 3)
- Phosphate ion (94 Da, Ligand)
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Transcript rna (1 kDa, RNA from Mammalian orthoreovirus 3 Dearing)
- Rna (60-mer) (19 kDa, RNA from Mammalian orthoreovirus 3 Dearing)
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3)
- Lambda 1 (19 kDa, Protein from Mammalian orthoreovirus 3)
- Lambda 1 (122 kDa, Protein from Mammalian orthoreovirus 3)
In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ogy
Q-score: 0.537
Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH
Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]
- Rna (5'-r(p*ap*gp*cp*c)-3') (1 kDa, RNA from Rotavirus A)
- Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
- Dna/rna (5'-d(*(gtg))-r(p*gp*c)-3') (1 kDa, Macromolecule from Rotavirus A)
In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ogz
Q-score: 0.517
Ding K, Celma CC, Zhang X, Chang T, Shen W, Atanasov I, Roy P, Zhou ZH
Nat Commun (2019) 10 pp. 2216-2216 [ DOI: doi:10.1038/s41467-019-10236-7 Pubmed: 31101900 ]
- Rna-dependent rna polymerase of rotavirus a (125 kDa, Protein from Rotavirus A)
- Rotavirus a (Virus from Rotavirus A)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A)
- Uridine 5'-triphosphate (484 Da, Ligand)
- Rna (5'-r(p*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
- Rna (5'-r(p*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*ap*up*a)-3') (5 kDa, RNA from Rotavirus A)
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj6
Q-score: 0.349
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Template (4 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Transcript (3 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))