Edit your search query here and hit Return to execute it:
subtomogram_extraction_method:Manuall*

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Cellular component [8]
  • Complex [6]
  • Cell [3]
  • Protein [3]
  • Virus [1]

Organism

  • Homo sapiens [6]
  • Campylobacter jejuni [4]
  • Yersinia enterocolitica [3]
  • Legionella pneumophila [2]
  • Nipah virus [1]
  • Vibrio cholerae [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Subtomogram averaging [18]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [12]

Release Date

  • 2026 [3]
  • 2021 [7]
  • 2020 [4]
  • 2019 [1]
  • 2018 [3]

Author by name

  • Beeby M [4]
  • Gulbronson CJ [4]
  • Henderson LD [4]
  • Hendrixson DR [4]
  • Matthews-palmer TRS [4]
  • Ribardo DA [4]
  • Berger C [3]
  • Diepold A [3]
  • Kudryashev M [3]
  • Lopez-iglesias C [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Ashkenazi A [2]
  • Bartesaghi A [2]
  • Borgnia MJ [2]
  • Bouvette J [2]
  • Carter SD [2]
  • Chetrit D [2]
  • Christie PJ [2]
  • De Maziere A [2]
  • Du X [2]
  • Hu B [2]
  • Huang R [2]
  • Jensen GJ [2]
  • Klemm B [2]
  • Klemm BP [2]
  • Klumperman J [2]
  • Klumpermann J [2]
  • Liu HF [2]
  • Liu J [2]
  • Mello JFR [2]
  • Pan Y [2]
  • Roy CR [2]
  • Schaaper RM [2]
  • Sikkema AP [2]
  • Tran NH [2]
  • Walter P [2]
  • Wang H [2]
  • Zhang J [2]
  • Zhang M [2]
  • Zhang Y [2]
  • Zhou Y [2]
  • Zou T [2]
  • Da Fonseca Rezende E Mello J [2]
  • Aguilar HC [1]
  • Autin L [1]
  • Beurskens FJ [1]
  • Chicano A [1]
  • Crosas E [1]
  • Daban JR [1]
  • Dick RA [1]
  • Engel BD [1]
  • Ercanli N [1]
  • Gros P [1]
  • Hinsley AC [1]
  • Howes SC [1]
  • Koning RI [1]
  • Koster AJ [1]
  • Lee JF [1]
  • Melero R [1]
  • Obr M [1]
  • Oton J [1]
  • Parren PWHI [1]
  • Ricana C [1]
  • Schur FKM [1]
  • Schuurman J [1]
  • Sharp TH [1]
  • Ugurlar D [1]
  • Upadhye VV [1]
  • De Jong Rn [1]
  • De Kreuk Bj [1]

Author by ORCID

  • Beeby M [4]
  • Hendrixson DR [4]
  • Gulbronson CJ [4]
  • Henderson LD [4]
  • Matthews-palmer TRS [4]
  • Ravelli RBG [3]
  • Berger C [3]
  • Diepold A [3]
  • Du X [2]
  • De Maziere A [2]
  • Borgnia MJ [2]
  • Zhou Y [2]
  • Carter SD [2]
  • Walter P [2]
  • Ashkenazi A [2]
  • Bartesaghi A [2]
  • Christie PJ [2]
  • Tran NH [2]
  • Sikkema AP [2]
  • Jensen GJ [2]
  • Liu J [2]
  • Klemm BP [2]
  • Wang H [2]
  • Roy CR [2]
  • Klumperman J [2]
  • Howes SC [1]
  • Koning RI [1]
  • Ugurlar D [1]
  • Melero R [1]
  • Daban JR [1]
  • Engel BD [1]
  • Sharp TH [1]
  • Oton J [1]
  • Parren PWHI [1]
  • Beurskens FJ [1]
  • Gros P [1]
  • De Jong Rn [1]
  • Schuurman J [1]
  • Koster AJ [1]

Journal

  • MBIO [4]
  • J STRUCT BIOL [3]
  • SCIENCE [3]
  • ACS CHEM BIOL [2]
  • NAT COMMUN [2]
  • NAT MICROBIOL [2]
  • BIORXIV [1]
  • EMBO J [1]

Software

  • IMOD [9]
  • DYNAMO [5]
  • PEET [4]
  • EMAN2 [3]
  • RELION [3]
  • WARP [2]
  • CTFFIND [1]
  • XMIPP [1]

Microscope

  • FEI POLARA 300 [4]
  • FEI TECNAI F20 [4]
  • FEI TITAN KRIOS [4]
  • FEI TECNAI ARCTICA [3]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON II 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [17]
Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file
EMD-49696
Download Map
3D View
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
CryoEM
Release date: Aug. 19, 2026
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9nqy
Q-score: 0.191
Similar entry percentile: 70%

Upadhye VV, Lee JF, Ercanli N, Ricana C, Hinsley AC, Obr M, Autin L, Schur FKM, Aguilar HC, Dick RA

bioRxiv (2026) [ Pubmed: 42523209 DOI: doi:10.64898/2026.07.16.738223 ]

EMD-63484
Download Map
3D View
Subtomogram average of GEM-mCherry-nanobody particles on A549 cell membranes
CryoEM
Release date: March 4, 2026
Resolution: 18.0 Å
EM Method: Subtomogram averaging

Zou T, Zhang J, Zhang Y, Zhang M, Wang H, Pan Y, Wang H

ACS Chem Biol (2026) 21 pp. 302-311 [ DOI: doi:10.1021/acschembio.5c00758 Pubmed: 41564420 ]

EMD-63526
Download Map
3D View
Subtomogram average of GEM-mCherry-nanobody labeled EGFR on A549 cell membranes
CryoEM
Release date: Feb. 4, 2026
Resolution: 38.0 Å
EM Method: Subtomogram averaging

Zou T, Zhang J, Zhang Y, Zhang M, Wang H, Pan Y, Wang H

ACS Chem Biol (2026) 21 pp. 302-311 [ DOI: doi:10.1021/acschembio.5c00758 Pubmed: 41564420 ]

EMD-23060
Download Map
3D View
The stress-sensing domain of activated IRE1a forms helical filaments in narrow ER membrane tubes
CryoEM
Release date: Nov. 10, 2021
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Tran NH, Carter SD, De Maziere A, Ashkenazi A, Klumperman J, Walter P, Jensen GJ

Science (2021) 374 pp. 52-57 [ Pubmed: 34591618 DOI: doi:10.1126/science.abh2474 ]

EMD-23058
Download Map
3D View
The stress-sensing domain of activated IRE1a forms helical filaments in narrow ER membrane tubes
CryoEM
Release date: Oct. 13, 2021
Resolution: 15.0 Å
EM Method: Subtomogram averaging

Tran NH, Carter SD, De Maziere A, Ashkenazi A, Klumperman J, Walter P, Jensen GJ

Science (2021) 374 pp. 52-57 [ Pubmed: 34591618 DOI: doi:10.1126/science.abh2474 ]

EMD-23356
Download Map
3D View
Structure of dNTPase at 3.6 Angstrom Resolution
CryoEM
Release date: March 3, 2021
Resolution: 3.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7lw5

Bouvette J, Liu HF, Du X, Zhou Y, Sikkema AP, da Fonseca Rezende E Mello J, Klemm BP, Huang R, Schaaper RM, Borgnia MJ, Bartesaghi A

Nat Commun (2021) 12 pp. 1957-1957 [ Pubmed: 33785757 DOI: doi:10.1038/s41467-021-22251-8 ]

EMD-23357
Download Map
3D View
Structure of 80S ribosome from EMPIAR-10064 at 5.6 Angstrom Resolution
CryoEM
Release date: March 3, 2021
Resolution: 5.6 Å
EM Method: Subtomogram averaging

Bouvette J, Liu HF, Du X, Zhou Y, Sikkema AP, da Fonseca Rezende E Mello J, Klemm BP, Huang R, Schaaper RM, Borgnia MJ, Bartesaghi A

Nat Commun (2021) 12 pp. 1957-1957 [ Pubmed: 33785757 DOI: doi:10.1038/s41467-021-22251-8 ]

EMD-11905
Download Map
3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - sorting platform
CryoEM
Release date: Feb. 24, 2021
Resolution: 40.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ DOI: doi:10.1016/j.jsb.2021.107701 Pubmed: 33549695 ]

EMD-11906
Download Map
3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - basal body
CryoEM
Release date: Feb. 24, 2021
Resolution: 33.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ DOI: doi:10.1016/j.jsb.2021.107701 Pubmed: 33549695 ]

EMD-11907
Download Map
3D View
In situ subtomogram averaging structure of the type III secretion system of yersinia enterocolitica - needle tip
CryoEM
Release date: Feb. 24, 2021
Resolution: 39.0 Å
EM Method: Subtomogram averaging

Berger C, Ravelli RBG, Lopez-Iglesias C, Kudryashev M, Diepold A, Peters PJ

J Struct Biol (2021) 213 pp. 107701-107701 [ DOI: doi:10.1016/j.jsb.2021.107701 Pubmed: 33549695 ]

Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Cellular component [8]
  • Complex [6]
  • Cell [3]
  • Protein [3]
  • Virus [1]

Organism

  • Homo sapiens [6]
  • Campylobacter jejuni [4]
  • Yersinia enterocolitica [3]
  • Legionella pneumophila [2]
  • Nipah virus [1]
  • Vibrio cholerae [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Subtomogram averaging [18]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [12]

Release Date

  • 2026 [3]
  • 2021 [7]
  • 2020 [4]
  • 2019 [1]
  • 2018 [3]

Author by name

  • Beeby M [4]
  • Gulbronson CJ [4]
  • Henderson LD [4]
  • Hendrixson DR [4]
  • Matthews-palmer TRS [4]
  • Ribardo DA [4]
  • Berger C [3]
  • Diepold A [3]
  • Kudryashev M [3]
  • Lopez-iglesias C [3]
  • Peters PJ [3]
  • Ravelli RBG [3]
  • Ashkenazi A [2]
  • Bartesaghi A [2]
  • Borgnia MJ [2]
  • Bouvette J [2]
  • Carter SD [2]
  • Chetrit D [2]
  • Christie PJ [2]
  • De Maziere A [2]
  • Du X [2]
  • Hu B [2]
  • Huang R [2]
  • Jensen GJ [2]
  • Klemm B [2]
  • Klemm BP [2]
  • Klumperman J [2]
  • Klumpermann J [2]
  • Liu HF [2]
  • Liu J [2]
  • Mello JFR [2]
  • Pan Y [2]
  • Roy CR [2]
  • Schaaper RM [2]
  • Sikkema AP [2]
  • Tran NH [2]
  • Walter P [2]
  • Wang H [2]
  • Zhang J [2]
  • Zhang M [2]
  • Zhang Y [2]
  • Zhou Y [2]
  • Zou T [2]
  • Da Fonseca Rezende E Mello J [2]
  • Aguilar HC [1]
  • Autin L [1]
  • Beurskens FJ [1]
  • Chicano A [1]
  • Crosas E [1]
  • Daban JR [1]
  • Dick RA [1]
  • Engel BD [1]
  • Ercanli N [1]
  • Gros P [1]
  • Hinsley AC [1]
  • Howes SC [1]
  • Koning RI [1]
  • Koster AJ [1]
  • Lee JF [1]
  • Melero R [1]
  • Obr M [1]
  • Oton J [1]
  • Parren PWHI [1]
  • Ricana C [1]
  • Schur FKM [1]
  • Schuurman J [1]
  • Sharp TH [1]
  • Ugurlar D [1]
  • Upadhye VV [1]
  • De Jong Rn [1]
  • De Kreuk Bj [1]

Author by ORCID

  • Beeby M [4]
  • Hendrixson DR [4]
  • Gulbronson CJ [4]
  • Henderson LD [4]
  • Matthews-palmer TRS [4]
  • Ravelli RBG [3]
  • Berger C [3]
  • Diepold A [3]
  • Du X [2]
  • De Maziere A [2]
  • Borgnia MJ [2]
  • Zhou Y [2]
  • Carter SD [2]
  • Walter P [2]
  • Ashkenazi A [2]
  • Bartesaghi A [2]
  • Christie PJ [2]
  • Tran NH [2]
  • Sikkema AP [2]
  • Jensen GJ [2]
  • Liu J [2]
  • Klemm BP [2]
  • Wang H [2]
  • Roy CR [2]
  • Klumperman J [2]
  • Howes SC [1]
  • Koning RI [1]
  • Ugurlar D [1]
  • Melero R [1]
  • Daban JR [1]
  • Engel BD [1]
  • Sharp TH [1]
  • Oton J [1]
  • Parren PWHI [1]
  • Beurskens FJ [1]
  • Gros P [1]
  • De Jong Rn [1]
  • Schuurman J [1]
  • Koster AJ [1]

Journal

  • MBIO [4]
  • J STRUCT BIOL [3]
  • SCIENCE [3]
  • ACS CHEM BIOL [2]
  • NAT COMMUN [2]
  • NAT MICROBIOL [2]
  • BIORXIV [1]
  • EMBO J [1]

Software

  • IMOD [9]
  • DYNAMO [5]
  • PEET [4]
  • EMAN2 [3]
  • RELION [3]
  • WARP [2]
  • CTFFIND [1]
  • XMIPP [1]

Microscope

  • FEI POLARA 300 [4]
  • FEI TECNAI F20 [4]
  • FEI TITAN KRIOS [4]
  • FEI TECNAI ARCTICA [3]
  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON II 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [17]