Filter By
Current Database
- EMDB [46484]
Current status
- REL [46484]
Sample type
- Complex [39771]
- Protein [33563]
- Ligand [19441]
- RNA [4460]
- DNA [3322]
- Virus [3140]
- Sample [2964]
- Cellular component [1801]
- Cell [333]
- Other [206]
- Tissue [49]
- Em label [2]
Organism
- Homo sapiens [17456]
- Synthetic construct [2994]
- Mus musculus [2948]
- Escherichia coli [2833]
- Severe acute respiratory syndrome coronavirus [2411]
- Saccharomyces cerevisiae [2335]
- Escherichia coli [1099]
- Rattus norvegicus [1086]
- Bos taurus [957]
- Human immunodeficiency virus 1 [863]
- Oryctolagus cuniculus [818]
- Saccharomyces cerevisiae [760]
- Sus scrofa [720]
- Xenopus laevis [592]
- Lama glama [580]
- Arabidopsis thaliana [502]
- Macaca mulatta [405]
- Mycolicibacterium smegmatis [324]
- Influenza a virus [271]
- Drosophila melanogaster [260]
- Mycobacterium tuberculosis [257]
- Bacillus subtilis [254]
- Chlamydomonas reinhardtii [175]
- Staphylococcus aureus [172]
- Vicugna pacos [171]
- Thermus thermophilus [164]
- Pseudomonas aeruginosa [159]
- Escherichia coli [158]
- Gallus gallus [154]
- Chaetomium thermophilum [153]
- Danio rerio [151]
- Mycobacterium tuberculosis [144]
- Tetrahymena thermophila [142]
- Leishmania tarentolae [136]
- Saccharomyces cerevisiae [134]
- Caenorhabditis elegans [134]
- Enterobacteria phage t4 [128]
- Bacillus subtilis [123]
- Ovis aries [121]
- Chaetomium thermophilum [116]
- Escherichia virus t7 [113]
- Bacillus sp. (strain ps3) [113]
- Salmonella enterica [109]
- Mycolicibacterium smegmatis [101]
- Streptococcus pyogenes [98]
- Severe acute respiratory syndrome coronavirus [95]
- Plasmodium falciparum [95]
- Trypanosoma brucei [91]
- Pseudomonas aeruginosa [88]
- African swine fever virus [86]
- Hepatitis b virus [85]
- Aequorea victoria [85]
- Spinacia oleracea [80]
- Vibrio cholerae [77]
- Plasmodium falciparum [76]
- Schizosaccharomyces pombe [76]
- Escherichia coli [75]
- Cricetulus griseus [74]
- Human cytomegalovirus [70]
- Thermus thermophilus [70]
- Human herpesvirus 1 [69]
- Monkeypox virus [68]
- Middle east respiratory syndrome-related coronavirus [68]
- Human immunodeficiency virus [67]
- Macaca fascicularis [67]
- Clostridioides difficile [65]
- Thermoplasma acidophilum [65]
- Schizosaccharomyces pombe [65]
- Synechocystis sp. pcc 6803 [62]
- Eastern equine encephalitis virus [61]
- Enterobacteria phage t4 [60]
- Lassa mammarenavirus [57]
- Polytomella sp. pringsheim 198.80 [57]
- Salmonella enterica [57]
- Adeno-associated virus [56]
- Saccharomyces cerevisiae [56]
- Dna molecule [55]
- Enterovirus d [55]
- Klebsiella pneumoniae [55]
- (no species) [54]
- Neurospora crassa [54]
- Pseudomonas phage phi6 [53]
- Escherichia phage lambda [52]
- Legionella pneumophila [51]
- Canis lupus [51]
- Epstein-barr virus (strain gd1) [50]
- Severe acute respiratory syndrome coronavirus [50]
- Trypanosoma brucei [50]
- Clostridium botulinum [48]
- Human coronavirus hku1 [48]
- Zika virus [47]
- Severe acute respiratory syndrome coronavirus [47]
- Equus caballus [47]
- Enterovirus a [46]
- Komagataella phaffii [46]
- Chikungunya virus [45]
- Trichomonas vaginalis [45]
- Sus scrofa [45]
- Pyrococcus furiosus [44]
- Thermotoga maritima [44]
EM Method
- Single-particle [46484]
Resolution
- < 2Å [323]
- ≥ 2Å and < 3Å [10469]
- ≥ 3Å and < 4Å [21239]
- ≥ 4Å and < 5Å [5087]
- ≥ 5Å and < 6Å [1166]
- ≥ 6Å and < 8Å [2339]
- ≥ 8Å and < 12Å [1747]
- ≥ 12Å and < 16Å [812]
- ≥ 16Å and < 20Å [795]
- ≥ 20Å and < 30Å [1995]
- ≥ 30Å [453]
Model molecular weight
- 0-50 kDa [11]
- 50-100 kDa [78]
- 100-250 kDa [347]
- 250-500 kDa [289]
- 500-1000 kDa [169]
- 1-2 MDa [82]
- 2-5 MDa [78]
- 5-10 MDa [13]
- > 10 MDa [14]
Release Date
- 2026 [1725]
- 2025 [10219]
- 2024 [8014]
- 2023 [6505]
- 2022 [5255]
- 2021 [3975]
- 2020 [3360]
- 2019 [1937]
- 2018 [1207]
- 2017 [867]
- 2016 [815]
- 2015 [478]
- 2014 [485]
- 2013 [428]
- 2012 [283]
- 2011 [220]
- 2010 [174]
- 2009 [158]
- 2008 [50]
- 2007 [115]
- 2006 [113]
- 2005 [40]
- 2004 [30]
- 2003 [24]
- 2002 [7]
Author by name
- Ward AB [1679]
- Zhang Y [1668]
- Wang Y [1577]
- Zhang X [1435]
- Wang X [1317]
- Li Y [1113]
- Liu Y [1095]
- Wang J [1022]
- Zhang Z [1011]
- Li X [977]
- Li Z [903]
- Li S [873]
- Zhang L [862]
- Li J [860]
- Zhang J [820]
- Wang L [800]
- Chen Y [794]
- Gao Y [767]
- Wang H [699]
- Li H [695]
- Liu S [666]
- Zhang S [630]
- Chen X [626]
- Chen Z [614]
- Wang C [583]
- Zhou ZH [583]
- Liu J [571]
- Liu Z [565]
- Zhang K [556]
- Liu L [554]
- Wang Q [543]
- Zhang H [537]
- Liu X [536]
- Liu H [535]
- Xu Y [532]
- Beckmann R [531]
- Shi Y [526]
- Yang Y [521]
- Jiang Y [519]
- Zhao Y [514]
- Cottrell CA [505]
- Chen J [497]
- Wang Z [490]
- Burton DR [481]
- Han J [480]
- Yang X [476]
- Zhu Y [473]
- Cheng J [468]
- Huang Y [449]
- Ozorowski G [447]
- Wilson IA [435]
- Zhang C [433]
- Liu C [432]
- Wang S [429]
- Yu X [408]
- Sewall LM [402]
- Torres JL [401]
- Xu C [396]
- Li W [395]
- Sanders RW [393]
- Wang P [390]
- Zhao J [383]
- Wu J [382]
- Zhou Q [380]
- Cheng Y [379]
- Berninghausen O [374]
- Zhang R [372]
- Zhang Q [368]
- Wang M [367]
- Rubinstein JL [365]
- Yang F [365]
- Wu C [364]
- Xu J [361]
- Rao Z [357]
- Wang W [355]
- Yu J [355]
- Sun Y [354]
- Lyumkis D [353]
- Yuan Q [353]
- Zhang B [352]
- Lu Y [350]
- Brown A [348]
- Zhu X [348]
- Chiu W [344]
- Zhou J [342]
- Li D [340]
- Li M [339]
- Chen L [338]
- Li L [338]
- Li T [337]
- Kwong PD [334]
- Zhang W [334]
- Zhou Y [333]
- Xu HE [332]
- Richey ST [329]
- Turner HL [328]
- Wu Y [326]
- Li N [321]
- Skiniotis G [321]
- Zhou L [320]
Author by ORCID
- Skiniotis G [12]
- Xu HE [11]
- Ward AB [10]
- Li H [10]
- Gao GF [10]
- Gao N [10]
- Chiu W [9]
- Rubinstein JL [9]
- Kobilka BK [8]
- Zhang K [8]
- Chai P [8]
- Kwong PD [8]
- He X [7]
- Liu B [7]
- Qi J [7]
- Plevka P [7]
- Blaza JN [6]
- Kurumizaka H [6]
- Robinson CV [6]
- Sexton PM [6]
- Raunser S [6]
- Cheng Y [6]
- Kuhlbrandt W [6]
- Cottrell CA [6]
- Gmeiner P [6]
- Ramakrishnan V [6]
- Shirouzu M [6]
- Xu F [6]
- Zhang P [6]
- Papasergi-scott MM [6]
- Sun JP [6]
- Wilson DN [6]
- Beckmann R [6]
- Wootten D [6]
- Hilger D [5]
- Frank J [5]
- Czarnocki-cieciura M [5]
- Baker D [5]
- Xu Y [5]
- Wang Y [5]
- Skowronek K [5]
- Kollman JM [5]
- Batebi H [5]
- Crispin M [5]
- Fuzik T [5]
- Li M [5]
- Belousoff MJ [5]
- Ranson NA [5]
- Sun M [5]
- Panova O [5]
- Amunts A [5]
- Yamashita K [5]
- Veesler D [5]
- He F [5]
- Gao Y [5]
- Perez-hernandez G [5]
- Hildebrand PW [5]
- Subramaniam S [5]
- Sui SF [4]
- Zhang L [4]
- Schneider C [4]
- Yu EW [4]
- Gu J [4]
- Ke A [4]
- Zheng W [4]
- Danev R [4]
- Brohawn SG [4]
- Ekemezie CL [4]
- Guo H [4]
- Hill CH [4]
- Southworth DR [4]
- Becker T [4]
- Li N [4]
- Noble AJ [4]
- Einsle O [4]
- Sun L [4]
- Deganutti G [4]
- Barford D [4]
- Tian C [4]
- Brown A [4]
- Zhang X [4]
- Li X [4]
- Chang YC [4]
- Gao Y [4]
- Rybak MY [4]
- Roth BL [4]
- Jiang Y [4]
- Brown CR [4]
- Stahlberg H [4]
- Campbell EA [4]
- Schoehn G [4]
- Li F [4]
- Tse E [4]
- King NP [4]
- Lu W [4]
- Steyaert J [4]
- Zhou T [4]
- Burger J [4]
- Jiang D [4]
- Li Y [4]
Journal
- NAT COMMUN [8322]
- TO BE PUBLISHED [4596]
- NATURE [4233]
- NAT STRUCT MOL BIOL [2729]
- PNAS [2591]
- SCIENCE [2415]
- CELL [1972]
- BIORXIV [1792]
- MOL CELL [1601]
- SCI ADV [1514]
- ELIFE [1315]
- STRUCTURE [1262]
- CELL REP [1191]
- NUCLEIC ACIDS RES [998]
- CELL RES [636]
- J VIROL [611]
- EMBO J [579]
- COMMUN BIOL [547]
- J BIOL CHEM [461]
- J MOL BIOL [460]
- PLOS PATHOG [429]
- NAT CHEM BIOL [427]
- CELL DISCOV [423]
- ACTA CRYSTALLOGR D STRUCT BIOL [339]
- NAT MICROBIOL [309]
- J STRUCT BIOL [235]
- MBIO [222]
- IMMUNITY [214]
- NAT PLANTS [211]
- SCI REP [197]
- PLOS BIOL [171]
- EMBO REP [169]
- CELL HOST MICROBE [162]
- PROTEIN CELL [154]
- PROTEIN SCI [153]
- NAT METHODS [147]
- J AM CHEM SOC [143]
- SCI TRANSL MED [127]
- VIRUSES [120]
- NPJ VACCINES [119]
- NEURON [115]
- IUCRJ [95]
- PLOS ONE [94]
- INT J MOL SCI [87]
- ISCIENCE [79]
- PNAS NEXUS [79]
- BIOCHEMISTRY [76]
- J MED CHEM [76]
- LIFE SCI ALLIANCE [76]
- J STRUCT BIOL X [73]
- SCI IMMUNOL [71]
- J CELL BIOL [64]
- ACS NANO [57]
- SIGNAL TRANSDUCT TARGET THER [57]
- J CLIN INV [55]
- RES SQ [55]
- ADV SCI [52]
- INT J BIOL MACROMOL [49]
- RNA [49]
- VIROLOGY [49]
- COMMUN CHEM [47]
- BLOOD [46]
- FEBS J [46]
- ANGEW CHEM INT ED ENGL [45]
- BIOMOLECULES [45]
- BIOCHEM BIOPHYS RES COMMUN [44]
- NAT CATAL [43]
- FRONT MOL BIOSCI [42]
- MOL PLANT [41]
- EBIOMEDICINE [38]
- GENES DEV [37]
- CELL REP METHODS [36]
- EMERG MICROBES INFECT [35]
- CURR BIOL [33]
- FEBS LETT [33]
- PLANT COMMUN. [33]
- NAT IMMUNOL [30]
- DEV CELL [29]
- FRONT IMMUNOL [29]
- BIOCHEM J [28]
- J EXP MED [27]
- NATL SCI REV [27]
- J GEN VIROL [26]
- PLANT CELL [26]
- CELL REP MED [25]
- NAT NANOTECHNOL [25]
- ACS CENT SCI [24]
- ACS CHEM BIOL [24]
- ACTA PHARMACOL.SIN. [24]
- BIOCHIM BIOPHYS ACTA BIOENERG [23]
- NAT MATER [23]
- CELL DEATH DIFFER. [22]
- HLIFE [22]
- SCI BULL (BEIJING) [22]
- J.MOL.CELL.CARDIOL. [21]
- SMALL [21]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [20]
- CURR RES STRUCT BIOL [20]
- NAT CHEM [20]
- BIOPHYS J [19]
Software
- CRYOSPARC [12681]
- RELION [11960]
- CTFFIND [2090]
- GCTF [1076]
- SPIDER [465]
- CISTEM [452]
- CHIMERA [393]
- FREALIGN [376]
- EMAN [316]
- COOT [269]
- EMAN2 [225]
- PHENIX [157]
- WARP [155]
- IMAGIC [143]
- JSPR [142]
- XMIPP [136]
- AUTO3DEM [122]
- UCSF CHIMERA [93]
- UCSF CHIMERAX [91]
- SPHIRE [85]
- EMAN2, SPARX [61]
- SPARX [54]
- CTFFIND3 [53]
- SITUS [48]
- MDFF [41]
- IMAGIC, SPIDER [39]
- SPIDER, APPION [39]
- URO [39]
- SIMPLE [37]
- APPION, SPIDER [32]
- EMFIT [32]
- CTFFIND3, RELION [31]
- SPIDER, FREALIGN [31]
- SCIPION [29]
- EM3DR2 [28]
- BSOFT [26]
- EMAN1 [26]
- MPSA [26]
- IMIRS [25]
- ISOLDE [25]
- CTFFIND4 [24]
- CHIMERA, SITUS [22]
- EMAN2, RELION [22]
- J3DR [22]
- O [22]
- JALIGN [20]
- APPION [19]
- CTFTILT [19]
- EMAN1, EMAN2 [18]
- SPIDER, RELION [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- MRC [17]
- CHIMERA, COOT [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- RELION, CTFFIND3 [15]
- CHIMERA, MDFF [14]
- CRYODRGN [14]
- SPIDER, EMAN [14]
- SPIDER, IMAGIC [14]
- IMAGIC-5, SPIDER [13]
- CHIMERA, FLEX-EM [12]
- EMAN2, SPIDER, XMIPP [11]
- GAP [11]
- JSPR, EMAN2, EMAN [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPIDER PACKAGE [11]
- SPIDER XMIPP [11]
- EMAN, XMIPP [10]
- EMAN2, RELION, 1.3 [10]
- FOCUS [10]
- FREALIX [10]
- MOTIONCORR2 [10]
- SPARX/EMAN2 [10]
- SPIDER, SPARX [10]
- CRYOLO [9]
- EMAN, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- EMREADY [9]
- FLEX-EM [9]
- MPSA, EMAN, EMAN2 [9]
- MRC, IMAGIC, SPIDER [9]
- PFT2, EM3DR2 [9]
- SPIDER, EMAN2 [9]
- VEDA [9]
- XMIPP, SPIDER [9]
- EMAN, EMAN2, MPSA [8]
- EMPFT EM3DR [8]
- IMAGIC, FREALIGN [8]
- IMAGIC, SPIDER, EMAN [8]
- IPET [8]
- JSPR, EMAN, EMAN2 [8]
- MOLREP, CHIMERA [8]
- RELION, FREALIGN [8]
- SPIDER, PACKAGE [8]
- XMIPP, FREALIGN [8]
Microscope
- FEI TITAN KRIOS [26311]
- TFS KRIOS [9197]
- FEI TALOS ARCTICA [2432]
- TFS GLACIOS [1439]
- FEI TECNAI F20 [1294]
- FEI POLARA 300 [838]
- FEI TECNAI SPIRIT [752]
- FEI TECNAI F30 [570]
- JEOL CRYO ARM 300 [567]
- FEI TITAN [515]
- FEI TECNAI ARCTICA [357]
- FEI TECNAI 12 [240]
- FEI/PHILIPS CM200FEG [230]
- FEI TECNAI 20 [220]
- TFS TALOS [188]
- JEOL 3200FSC [138]
- JEOL 2200FS [119]
- JEOL 2010F [108]
- JEOL 2100F [90]
- JEOL CRYO ARM 200 [87]
- FEI/PHILIPS CM300FEG/T [85]
- TFS TALOS L120C [75]
- TFS TALOS F200C [65]
- JEOL 3200FS [50]
- FEI/PHILIPS EM420 [47]
- JEOL 2100 [47]
- TFS TITAN THEMIS [39]
- JEOL 1230 [38]
- FEI MORGAGNI [27]
- FEI/PHILIPS CM120T [26]
- FEI/PHILIPS CM200T [24]
- JEOL 1200EXII [22]
- JEOL 3000SFF [21]
- OTHER [20]
- FEI/PHILIPS CM200FEG/ST [19]
- TFS TUNDRA [19]
- JEOL 4000 [17]
- JEOL 4000EX [17]
- JEOL 1400 [16]
- FEI TECNAI 10 [15]
- JEOL 1200EX [15]
- FEI/PHILIPS CM300FEG/HE [14]
- ZEISS LIBRA120PLUS [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [8]
- JEOL 2010 [8]
- JEOL 2200FSC [8]
- JEOL 100CX [7]
- JEOL 3100FFC [7]
- FEI TECNAI SPHERA [6]
- FEI/PHILIPS CM12 [5]
- JEOL 2000EX [5]
- JEOL KYOTO-3000SFF [5]
- FEI/PHILIPS CM10 [4]
- JEOL 1010 [4]
- FEI/PHILIPS CM300FEG/ST [3]
- HITACHI EF2000 [3]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [44781]
- LAB6 [1261]
- OTHER [270]
- TUNGSTEN HAIRPIN [172]
Film or detector model
- GATAN K3 6K X 4K [12616]
- GATAN K3 BIOQUANTUM 6K X 4K [9214]
- GATAN K2 SUMMIT 4K X 4K [8955]
- FEI FALCON IV 4K X 4K [4118]
- FEI FALCON III 4K X 4K [2737]
- GATAN K2 QUANTUM 4K X 4K [1530]
- FEI FALCON II 4K X 4K [1254]
- KODAK SO-163 FILM [928]
- TFS FALCON 4I 4K X 4K [846]
- TVIPS TEMCAM-F416 4K X 4K [741]
- GATAN ULTRASCAN 4000 4K X 4K [601]
- FEI EAGLE 4K X 4K [475]
- GATAN K3 BIOCONTINUUM 6K X 4K [378]
- OTHER [343]
- FEI CETA 4K X 4K [275]
- GATAN K2 BASE 4K X 4K [192]
- GATAN K2 4K X 4K [180]
- TVIPS TEMCAM-F415 4K X 4K [121]
- DIRECT ELECTRON DE-20 5K X 3K [114]
- GENERIC GATAN 4K X 4K [103]
- GENERIC TVIPS 4K X 4K [71]
- FEI FALCON I 4K X 4K [68]
- GENERIC CCD [62]
- FEI EAGLE 2K X 2K [57]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- TVIPS TEMCAM-F816 8K X 8K [41]
- GATAN K2 IS 4K X 4K [35]
- GATAN ULTRASCAN 1000 2K X 2K [33]
- DIRECT ELECTRON APOLLO 4K X 4K [29]
- DIRECT ELECTRON DE-16 4K X 4K [27]
- DIRECT ELECTRON DE-12 4K X 3K [24]
- GENERIC GATAN [24]
- DIRECT ELECTRON DE-10 5K X 4K [21]
- KODAK 4489 FILM [13]
- DECTRIS SINGLA 1K X 1K [12]
- TVIPS TEMCAM-F224 2K X 2K [12]
- GATAN MULTISCAN [10]
- AGFA SCIENTA FILM [9]
- GENERIC FILM [9]
- GENERIC TVIPS [8]
- GATAN ORIUS SC200 2K X 2K [7]
- TVIPS TEMCAM-F216 2K X 2K [7]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GENERIC CCD 2K X 2K [5]
- DECTRIS ELA 1K X 0.5K [4]
- GENERIC GATAN 2K X 2K [4]
- SIA 15C 3K X 3K [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [1088]
- UniProt [1024]
- PDBe-Kb [936]
- AlphaFold DB [875]
- InterPro [865]
- Gene Ontology [816]
- Pfam [784]
- ChEBI [628]
- ChEMBL [575]
- DrugBank [514]
- Complex Portal [295]
- EMPIAR [93]
- SCOP2 [27]
- CATH [11]
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8v9t
Q-score: 0.385
Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D
Nucleic Acids Res (2025) 53 [ Pubmed: 41312769 DOI: doi:10.1093/nar/gkaf1139 ]
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9clm
Q-score: 0.265
Dubey S, Noinaj N
To Be Published
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 9cmg
Q-score: 0.413
Dubey S, Noinaj N
To Be Published
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9dc4
Q-score: 0.519
Dubey S, Noinaj N
To Be Published
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9dhx
Q-score: 0.555
Sarkar S, Gebert LFR, MacRae IJ
To Be Published
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9mi8
Q-score: 0.314
Sverzhinsky A, Xue H, Langelier MF, Muniz Correa MV, Del Mundo J, Classen S, Hammel M, Rothenberg E, Pascal JM
Nat Commun (2026) [ Pubmed: 41698892 DOI: doi:10.1038/s41467-026-69375-3 ]
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 9na1
Q-score: 0.354
Jones CP, Ferre-D'Amare AR
To Be Published
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 9na7
Q-score: 0.338
Jones CP, Ferre-D'Amare AR
To Be Published
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 9nak
Q-score: 0.324
Jones CP, Ferre-D'Amare AR
To Be Published
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9nam
Q-score: 0.411
Jones CP, Ferre-D'Amare AR
To Be Published
Filter By
Current Database
- EMDB [46484]
Current status
- REL [46484]
Sample type
- Complex [39771]
- Protein [33563]
- Ligand [19441]
- RNA [4460]
- DNA [3322]
- Virus [3140]
- Sample [2964]
- Cellular component [1801]
- Cell [333]
- Other [206]
- Tissue [49]
- Em label [2]
Organism
- Homo sapiens [17456]
- Synthetic construct [2994]
- Mus musculus [2948]
- Escherichia coli [2833]
- Severe acute respiratory syndrome coronavirus [2411]
- Saccharomyces cerevisiae [2335]
- Escherichia coli [1099]
- Rattus norvegicus [1086]
- Bos taurus [957]
- Human immunodeficiency virus 1 [863]
- Oryctolagus cuniculus [818]
- Saccharomyces cerevisiae [760]
- Sus scrofa [720]
- Xenopus laevis [592]
- Lama glama [580]
- Arabidopsis thaliana [502]
- Macaca mulatta [405]
- Mycolicibacterium smegmatis [324]
- Influenza a virus [271]
- Drosophila melanogaster [260]
- Mycobacterium tuberculosis [257]
- Bacillus subtilis [254]
- Chlamydomonas reinhardtii [175]
- Staphylococcus aureus [172]
- Vicugna pacos [171]
- Thermus thermophilus [164]
- Pseudomonas aeruginosa [159]
- Escherichia coli [158]
- Gallus gallus [154]
- Chaetomium thermophilum [153]
- Danio rerio [151]
- Mycobacterium tuberculosis [144]
- Tetrahymena thermophila [142]
- Leishmania tarentolae [136]
- Saccharomyces cerevisiae [134]
- Caenorhabditis elegans [134]
- Enterobacteria phage t4 [128]
- Bacillus subtilis [123]
- Ovis aries [121]
- Chaetomium thermophilum [116]
- Escherichia virus t7 [113]
- Bacillus sp. (strain ps3) [113]
- Salmonella enterica [109]
- Mycolicibacterium smegmatis [101]
- Streptococcus pyogenes [98]
- Severe acute respiratory syndrome coronavirus [95]
- Plasmodium falciparum [95]
- Trypanosoma brucei [91]
- Pseudomonas aeruginosa [88]
- African swine fever virus [86]
- Hepatitis b virus [85]
- Aequorea victoria [85]
- Spinacia oleracea [80]
- Vibrio cholerae [77]
- Plasmodium falciparum [76]
- Schizosaccharomyces pombe [76]
- Escherichia coli [75]
- Cricetulus griseus [74]
- Human cytomegalovirus [70]
- Thermus thermophilus [70]
- Human herpesvirus 1 [69]
- Monkeypox virus [68]
- Middle east respiratory syndrome-related coronavirus [68]
- Human immunodeficiency virus [67]
- Macaca fascicularis [67]
- Clostridioides difficile [65]
- Thermoplasma acidophilum [65]
- Schizosaccharomyces pombe [65]
- Synechocystis sp. pcc 6803 [62]
- Eastern equine encephalitis virus [61]
- Enterobacteria phage t4 [60]
- Lassa mammarenavirus [57]
- Polytomella sp. pringsheim 198.80 [57]
- Salmonella enterica [57]
- Adeno-associated virus [56]
- Saccharomyces cerevisiae [56]
- Dna molecule [55]
- Enterovirus d [55]
- Klebsiella pneumoniae [55]
- (no species) [54]
- Neurospora crassa [54]
- Pseudomonas phage phi6 [53]
- Escherichia phage lambda [52]
- Legionella pneumophila [51]
- Canis lupus [51]
- Epstein-barr virus (strain gd1) [50]
- Severe acute respiratory syndrome coronavirus [50]
- Trypanosoma brucei [50]
- Clostridium botulinum [48]
- Human coronavirus hku1 [48]
- Zika virus [47]
- Severe acute respiratory syndrome coronavirus [47]
- Equus caballus [47]
- Enterovirus a [46]
- Komagataella phaffii [46]
- Chikungunya virus [45]
- Trichomonas vaginalis [45]
- Sus scrofa [45]
- Pyrococcus furiosus [44]
- Thermotoga maritima [44]
EM Method
- Single-particle [46484]
Resolution
- < 2Å [323]
- ≥ 2Å and < 3Å [10469]
- ≥ 3Å and < 4Å [21239]
- ≥ 4Å and < 5Å [5087]
- ≥ 5Å and < 6Å [1166]
- ≥ 6Å and < 8Å [2339]
- ≥ 8Å and < 12Å [1747]
- ≥ 12Å and < 16Å [812]
- ≥ 16Å and < 20Å [795]
- ≥ 20Å and < 30Å [1995]
- ≥ 30Å [453]
Model molecular weight
- 0-50 kDa [11]
- 50-100 kDa [78]
- 100-250 kDa [347]
- 250-500 kDa [289]
- 500-1000 kDa [169]
- 1-2 MDa [82]
- 2-5 MDa [78]
- 5-10 MDa [13]
- > 10 MDa [14]
Release Date
- 2026 [1725]
- 2025 [10219]
- 2024 [8014]
- 2023 [6505]
- 2022 [5255]
- 2021 [3975]
- 2020 [3360]
- 2019 [1937]
- 2018 [1207]
- 2017 [867]
- 2016 [815]
- 2015 [478]
- 2014 [485]
- 2013 [428]
- 2012 [283]
- 2011 [220]
- 2010 [174]
- 2009 [158]
- 2008 [50]
- 2007 [115]
- 2006 [113]
- 2005 [40]
- 2004 [30]
- 2003 [24]
- 2002 [7]
Author by name
- Ward AB [1679]
- Zhang Y [1668]
- Wang Y [1577]
- Zhang X [1435]
- Wang X [1317]
- Li Y [1113]
- Liu Y [1095]
- Wang J [1022]
- Zhang Z [1011]
- Li X [977]
- Li Z [903]
- Li S [873]
- Zhang L [862]
- Li J [860]
- Zhang J [820]
- Wang L [800]
- Chen Y [794]
- Gao Y [767]
- Wang H [699]
- Li H [695]
- Liu S [666]
- Zhang S [630]
- Chen X [626]
- Chen Z [614]
- Wang C [583]
- Zhou ZH [583]
- Liu J [571]
- Liu Z [565]
- Zhang K [556]
- Liu L [554]
- Wang Q [543]
- Zhang H [537]
- Liu X [536]
- Liu H [535]
- Xu Y [532]
- Beckmann R [531]
- Shi Y [526]
- Yang Y [521]
- Jiang Y [519]
- Zhao Y [514]
- Cottrell CA [505]
- Chen J [497]
- Wang Z [490]
- Burton DR [481]
- Han J [480]
- Yang X [476]
- Zhu Y [473]
- Cheng J [468]
- Huang Y [449]
- Ozorowski G [447]
- Wilson IA [435]
- Zhang C [433]
- Liu C [432]
- Wang S [429]
- Yu X [408]
- Sewall LM [402]
- Torres JL [401]
- Xu C [396]
- Li W [395]
- Sanders RW [393]
- Wang P [390]
- Zhao J [383]
- Wu J [382]
- Zhou Q [380]
- Cheng Y [379]
- Berninghausen O [374]
- Zhang R [372]
- Zhang Q [368]
- Wang M [367]
- Rubinstein JL [365]
- Yang F [365]
- Wu C [364]
- Xu J [361]
- Rao Z [357]
- Wang W [355]
- Yu J [355]
- Sun Y [354]
- Lyumkis D [353]
- Yuan Q [353]
- Zhang B [352]
- Lu Y [350]
- Brown A [348]
- Zhu X [348]
- Chiu W [344]
- Zhou J [342]
- Li D [340]
- Li M [339]
- Chen L [338]
- Li L [338]
- Li T [337]
- Kwong PD [334]
- Zhang W [334]
- Zhou Y [333]
- Xu HE [332]
- Richey ST [329]
- Turner HL [328]
- Wu Y [326]
- Li N [321]
- Skiniotis G [321]
- Zhou L [320]
Author by ORCID
- Skiniotis G [12]
- Xu HE [11]
- Ward AB [10]
- Li H [10]
- Gao GF [10]
- Gao N [10]
- Chiu W [9]
- Rubinstein JL [9]
- Kobilka BK [8]
- Zhang K [8]
- Chai P [8]
- Kwong PD [8]
- He X [7]
- Liu B [7]
- Qi J [7]
- Plevka P [7]
- Blaza JN [6]
- Kurumizaka H [6]
- Robinson CV [6]
- Sexton PM [6]
- Raunser S [6]
- Cheng Y [6]
- Kuhlbrandt W [6]
- Cottrell CA [6]
- Gmeiner P [6]
- Ramakrishnan V [6]
- Shirouzu M [6]
- Xu F [6]
- Zhang P [6]
- Papasergi-scott MM [6]
- Sun JP [6]
- Wilson DN [6]
- Beckmann R [6]
- Wootten D [6]
- Hilger D [5]
- Frank J [5]
- Czarnocki-cieciura M [5]
- Baker D [5]
- Xu Y [5]
- Wang Y [5]
- Skowronek K [5]
- Kollman JM [5]
- Batebi H [5]
- Crispin M [5]
- Fuzik T [5]
- Li M [5]
- Belousoff MJ [5]
- Ranson NA [5]
- Sun M [5]
- Panova O [5]
- Amunts A [5]
- Yamashita K [5]
- Veesler D [5]
- He F [5]
- Gao Y [5]
- Perez-hernandez G [5]
- Hildebrand PW [5]
- Subramaniam S [5]
- Sui SF [4]
- Zhang L [4]
- Schneider C [4]
- Yu EW [4]
- Gu J [4]
- Ke A [4]
- Zheng W [4]
- Danev R [4]
- Brohawn SG [4]
- Ekemezie CL [4]
- Guo H [4]
- Hill CH [4]
- Southworth DR [4]
- Becker T [4]
- Li N [4]
- Noble AJ [4]
- Einsle O [4]
- Sun L [4]
- Deganutti G [4]
- Barford D [4]
- Tian C [4]
- Brown A [4]
- Zhang X [4]
- Li X [4]
- Chang YC [4]
- Gao Y [4]
- Rybak MY [4]
- Roth BL [4]
- Jiang Y [4]
- Brown CR [4]
- Stahlberg H [4]
- Campbell EA [4]
- Schoehn G [4]
- Li F [4]
- Tse E [4]
- King NP [4]
- Lu W [4]
- Steyaert J [4]
- Zhou T [4]
- Burger J [4]
- Jiang D [4]
- Li Y [4]
Journal
- NAT COMMUN [8322]
- TO BE PUBLISHED [4596]
- NATURE [4233]
- NAT STRUCT MOL BIOL [2729]
- PNAS [2591]
- SCIENCE [2415]
- CELL [1972]
- BIORXIV [1792]
- MOL CELL [1601]
- SCI ADV [1514]
- ELIFE [1315]
- STRUCTURE [1262]
- CELL REP [1191]
- NUCLEIC ACIDS RES [998]
- CELL RES [636]
- J VIROL [611]
- EMBO J [579]
- COMMUN BIOL [547]
- J BIOL CHEM [461]
- J MOL BIOL [460]
- PLOS PATHOG [429]
- NAT CHEM BIOL [427]
- CELL DISCOV [423]
- ACTA CRYSTALLOGR D STRUCT BIOL [339]
- NAT MICROBIOL [309]
- J STRUCT BIOL [235]
- MBIO [222]
- IMMUNITY [214]
- NAT PLANTS [211]
- SCI REP [197]
- PLOS BIOL [171]
- EMBO REP [169]
- CELL HOST MICROBE [162]
- PROTEIN CELL [154]
- PROTEIN SCI [153]
- NAT METHODS [147]
- J AM CHEM SOC [143]
- SCI TRANSL MED [127]
- VIRUSES [120]
- NPJ VACCINES [119]
- NEURON [115]
- IUCRJ [95]
- PLOS ONE [94]
- INT J MOL SCI [87]
- ISCIENCE [79]
- PNAS NEXUS [79]
- BIOCHEMISTRY [76]
- J MED CHEM [76]
- LIFE SCI ALLIANCE [76]
- J STRUCT BIOL X [73]
- SCI IMMUNOL [71]
- J CELL BIOL [64]
- ACS NANO [57]
- SIGNAL TRANSDUCT TARGET THER [57]
- J CLIN INV [55]
- RES SQ [55]
- ADV SCI [52]
- INT J BIOL MACROMOL [49]
- RNA [49]
- VIROLOGY [49]
- COMMUN CHEM [47]
- BLOOD [46]
- FEBS J [46]
- ANGEW CHEM INT ED ENGL [45]
- BIOMOLECULES [45]
- BIOCHEM BIOPHYS RES COMMUN [44]
- NAT CATAL [43]
- FRONT MOL BIOSCI [42]
- MOL PLANT [41]
- EBIOMEDICINE [38]
- GENES DEV [37]
- CELL REP METHODS [36]
- EMERG MICROBES INFECT [35]
- CURR BIOL [33]
- FEBS LETT [33]
- PLANT COMMUN. [33]
- NAT IMMUNOL [30]
- DEV CELL [29]
- FRONT IMMUNOL [29]
- BIOCHEM J [28]
- J EXP MED [27]
- NATL SCI REV [27]
- J GEN VIROL [26]
- PLANT CELL [26]
- CELL REP MED [25]
- NAT NANOTECHNOL [25]
- ACS CENT SCI [24]
- ACS CHEM BIOL [24]
- ACTA PHARMACOL.SIN. [24]
- BIOCHIM BIOPHYS ACTA BIOENERG [23]
- NAT MATER [23]
- CELL DEATH DIFFER. [22]
- HLIFE [22]
- SCI BULL (BEIJING) [22]
- J.MOL.CELL.CARDIOL. [21]
- SMALL [21]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [20]
- CURR RES STRUCT BIOL [20]
- NAT CHEM [20]
- BIOPHYS J [19]
Software
- CRYOSPARC [12681]
- RELION [11960]
- CTFFIND [2090]
- GCTF [1076]
- SPIDER [465]
- CISTEM [452]
- CHIMERA [393]
- FREALIGN [376]
- EMAN [316]
- COOT [269]
- EMAN2 [225]
- PHENIX [157]
- WARP [155]
- IMAGIC [143]
- JSPR [142]
- XMIPP [136]
- AUTO3DEM [122]
- UCSF CHIMERA [93]
- UCSF CHIMERAX [91]
- SPHIRE [85]
- EMAN2, SPARX [61]
- SPARX [54]
- CTFFIND3 [53]
- SITUS [48]
- MDFF [41]
- IMAGIC, SPIDER [39]
- SPIDER, APPION [39]
- URO [39]
- SIMPLE [37]
- APPION, SPIDER [32]
- EMFIT [32]
- CTFFIND3, RELION [31]
- SPIDER, FREALIGN [31]
- SCIPION [29]
- EM3DR2 [28]
- BSOFT [26]
- EMAN1 [26]
- MPSA [26]
- IMIRS [25]
- ISOLDE [25]
- CTFFIND4 [24]
- CHIMERA, SITUS [22]
- EMAN2, RELION [22]
- J3DR [22]
- O [22]
- JALIGN [20]
- APPION [19]
- CTFTILT [19]
- EMAN1, EMAN2 [18]
- SPIDER, RELION [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- MRC [17]
- CHIMERA, COOT [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- RELION, CTFFIND3 [15]
- CHIMERA, MDFF [14]
- CRYODRGN [14]
- SPIDER, EMAN [14]
- SPIDER, IMAGIC [14]
- IMAGIC-5, SPIDER [13]
- CHIMERA, FLEX-EM [12]
- EMAN2, SPIDER, XMIPP [11]
- GAP [11]
- JSPR, EMAN2, EMAN [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPIDER PACKAGE [11]
- SPIDER XMIPP [11]
- EMAN, XMIPP [10]
- EMAN2, RELION, 1.3 [10]
- FOCUS [10]
- FREALIX [10]
- MOTIONCORR2 [10]
- SPARX/EMAN2 [10]
- SPIDER, SPARX [10]
- CRYOLO [9]
- EMAN, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
- EMREADY [9]
- FLEX-EM [9]
- MPSA, EMAN, EMAN2 [9]
- MRC, IMAGIC, SPIDER [9]
- PFT2, EM3DR2 [9]
- SPIDER, EMAN2 [9]
- VEDA [9]
- XMIPP, SPIDER [9]
- EMAN, EMAN2, MPSA [8]
- EMPFT EM3DR [8]
- IMAGIC, FREALIGN [8]
- IMAGIC, SPIDER, EMAN [8]
- IPET [8]
- JSPR, EMAN, EMAN2 [8]
- MOLREP, CHIMERA [8]
- RELION, FREALIGN [8]
- SPIDER, PACKAGE [8]
- XMIPP, FREALIGN [8]
Microscope
- FEI TITAN KRIOS [26311]
- TFS KRIOS [9197]
- FEI TALOS ARCTICA [2432]
- TFS GLACIOS [1439]
- FEI TECNAI F20 [1294]
- FEI POLARA 300 [838]
- FEI TECNAI SPIRIT [752]
- FEI TECNAI F30 [570]
- JEOL CRYO ARM 300 [567]
- FEI TITAN [515]
- FEI TECNAI ARCTICA [357]
- FEI TECNAI 12 [240]
- FEI/PHILIPS CM200FEG [230]
- FEI TECNAI 20 [220]
- TFS TALOS [188]
- JEOL 3200FSC [138]
- JEOL 2200FS [119]
- JEOL 2010F [108]
- JEOL 2100F [90]
- JEOL CRYO ARM 200 [87]
- FEI/PHILIPS CM300FEG/T [85]
- TFS TALOS L120C [75]
- TFS TALOS F200C [65]
- JEOL 3200FS [50]
- FEI/PHILIPS EM420 [47]
- JEOL 2100 [47]
- TFS TITAN THEMIS [39]
- JEOL 1230 [38]
- FEI MORGAGNI [27]
- FEI/PHILIPS CM120T [26]
- FEI/PHILIPS CM200T [24]
- JEOL 1200EXII [22]
- JEOL 3000SFF [21]
- OTHER [20]
- FEI/PHILIPS CM200FEG/ST [19]
- TFS TUNDRA [19]
- JEOL 4000 [17]
- JEOL 4000EX [17]
- JEOL 1400 [16]
- FEI TECNAI 10 [15]
- JEOL 1200EX [15]
- FEI/PHILIPS CM300FEG/HE [14]
- ZEISS LIBRA120PLUS [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [8]
- JEOL 2010 [8]
- JEOL 2200FSC [8]
- JEOL 100CX [7]
- JEOL 3100FFC [7]
- FEI TECNAI SPHERA [6]
- FEI/PHILIPS CM12 [5]
- JEOL 2000EX [5]
- JEOL KYOTO-3000SFF [5]
- FEI/PHILIPS CM10 [4]
- JEOL 1010 [4]
- FEI/PHILIPS CM300FEG/ST [3]
- HITACHI EF2000 [3]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- JEOL 1200 [3]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS EM400 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- SHUIMU TOTEM 300S [1]
Electron Source
- FIELD EMISSION GUN [44781]
- LAB6 [1261]
- OTHER [270]
- TUNGSTEN HAIRPIN [172]
Film or detector model
- GATAN K3 6K X 4K [12616]
- GATAN K3 BIOQUANTUM 6K X 4K [9214]
- GATAN K2 SUMMIT 4K X 4K [8955]
- FEI FALCON IV 4K X 4K [4118]
- FEI FALCON III 4K X 4K [2737]
- GATAN K2 QUANTUM 4K X 4K [1530]
- FEI FALCON II 4K X 4K [1254]
- KODAK SO-163 FILM [928]
- TFS FALCON 4I 4K X 4K [846]
- TVIPS TEMCAM-F416 4K X 4K [741]
- GATAN ULTRASCAN 4000 4K X 4K [601]
- FEI EAGLE 4K X 4K [475]
- GATAN K3 BIOCONTINUUM 6K X 4K [378]
- OTHER [343]
- FEI CETA 4K X 4K [275]
- GATAN K2 BASE 4K X 4K [192]
- GATAN K2 4K X 4K [180]
- TVIPS TEMCAM-F415 4K X 4K [121]
- DIRECT ELECTRON DE-20 5K X 3K [114]
- GENERIC GATAN 4K X 4K [103]
- GENERIC TVIPS 4K X 4K [71]
- FEI FALCON I 4K X 4K [68]
- GENERIC CCD [62]
- FEI EAGLE 2K X 2K [57]
- DIRECT ELECTRON DE-64 8K X 8K [48]
- TVIPS TEMCAM-F816 8K X 8K [41]
- GATAN K2 IS 4K X 4K [35]
- GATAN ULTRASCAN 1000 2K X 2K [33]
- DIRECT ELECTRON APOLLO 4K X 4K [29]
- DIRECT ELECTRON DE-16 4K X 4K [27]
- DIRECT ELECTRON DE-12 4K X 3K [24]
- GENERIC GATAN [24]
- DIRECT ELECTRON DE-10 5K X 4K [21]
- KODAK 4489 FILM [13]
- DECTRIS SINGLA 1K X 1K [12]
- TVIPS TEMCAM-F224 2K X 2K [12]
- GATAN MULTISCAN [10]
- AGFA SCIENTA FILM [9]
- GENERIC FILM [9]
- GENERIC TVIPS [8]
- GATAN ORIUS SC200 2K X 2K [7]
- TVIPS TEMCAM-F216 2K X 2K [7]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- GENERIC CCD 2K X 2K [5]
- DECTRIS ELA 1K X 0.5K [4]
- GENERIC GATAN 2K X 2K [4]
- SIA 15C 3K X 3K [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [1088]
- UniProt [1024]
- PDBe-Kb [936]
- AlphaFold DB [875]
- InterPro [865]
- Gene Ontology [816]
- Pfam [784]
- ChEBI [628]
- ChEMBL [575]
- DrugBank [514]
- Complex Portal [295]
- EMPIAR [93]
- SCOP2 [27]
- CATH [11]
