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structure_determination_method:"subtomogramAveraging"
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Current Database
- EMDB [2897]
Current status
- REL [2897]
Sample type
- Complex [1052]
- Cellular component [732]
- Protein [590]
- Cell [522]
- Virus [470]
- Sample [451]
- Ligand [56]
- RNA [47]
- Other [21]
- Tissue [18]
- DNA [2]
Organism
- Homo sapiens [442]
- Mus musculus [302]
- Chlamydomonas reinhardtii [240]
- Human immunodeficiency virus 1 [124]
- Escherichia coli [106]
- Saccharomyces cerevisiae [94]
- Tetrahymena thermophila [68]
- Mycoplasma pneumoniae [67]
- Severe acute respiratory syndrome coronavirus [64]
- Rattus norvegicus [63]
- Dictyostelium discoideum [48]
- Schizosaccharomyces pombe [32]
- Oryctolagus cuniculus [32]
- Borrelia burgdorferi [30]
- Sus scrofa [28]
- Bos taurus [28]
- Chikungunya virus [26]
- Drosophila melanogaster [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [23]
- Xenopus laevis [23]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Caenorhabditis elegans [20]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [19]
- Escherichia coli [17]
- Sus scrofa [17]
- Measles morbillivirus [13]
- Danio rerio [13]
- (no species) [12]
- Vaccinia virus [12]
- Simian immunodeficiency virus [12]
- Primate t-lymphotropic virus 1 [12]
- Trypanosoma brucei [12]
- Human immunodeficiency virus 1 [12]
- Toxoplasma gondii [11]
- Mammalian orthoreovirus [10]
- Influenza a virus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Synthetic construct [10]
- Legionella pneumophila [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Human herpesvirus 8 [8]
- Saccharomyces cerevisiae [8]
- Aggregatibacter actinomycetemcomitans [8]
- Salmonella enterica [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Campylobacter jejuni [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Influenza a virus [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
- Methanospirillum hungatei [5]
- Arabidopsis thaliana [5]
- Synechococcus virus syn5 [5]
- Trypanosoma brucei [5]
- Saccharomyces cerevisiae [5]
EM Method
- Subtomogram averaging [2897]
Resolution
- < 2Å [3]
- ≥ 2Å and < 3Å [9]
- ≥ 3Å and < 4Å [65]
- ≥ 4Å and < 5Å [86]
- ≥ 5Å and < 6Å [43]
- ≥ 6Å and < 8Å [215]
- ≥ 8Å and < 12Å [435]
- ≥ 12Å and < 16Å [233]
- ≥ 16Å and < 20Å [204]
- ≥ 20Å and < 30Å [563]
- ≥ 30Å [944]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [53]
- 500-1000 kDa [47]
- 1-2 MDa [35]
- 2-5 MDa [48]
- 5-10 MDa [7]
- > 10 MDa [10]
Release Date
- 2025 [416]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [234]
- Mahamid J [149]
- Liu J [141]
- Baumeister W [139]
- Turonova B [138]
- Plitzko JM [125]
- Briggs JAG [117]
- Zhang P [111]
- Kreysing JP [106]
- Agard DA [103]
- Jensen GJ [101]
- Li S [98]
- Zhu Y [96]
- Engel BD [87]
- Grange M [84]
- Chang YW [81]
- Chiu W [81]
- Beck F [80]
- Kikkawa M [80]
- Forster F [77]
- Krausslich HG [77]
- Xue L [77]
- Guo Q [76]
- Villa E [76]
- Welsch S [75]
- Schmid MF [73]
- Hummer G [72]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [69]
- Pfeffer S [69]
- Schur FKM [69]
- Taniguchi R [68]
- Yanagisawa H [67]
- Obr M [65]
- Hutchings J [64]
- Beeby M [63]
- Kosinski J [63]
- Pilhofer M [63]
- Bartesaghi A [62]
- Bui KH [62]
- Xu J [61]
- Wan W [60]
- Cramer P [58]
- Pigino G [58]
- Tegunov D [57]
- Rappsilber J [55]
- Briggs JA [54]
- Nicastro D [54]
- Cruz-leon S [53]
- Kotecha A [53]
- Li Z [52]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Hoffmann PC [51]
- Martinez-sanchez A [51]
- Sun F [51]
- Subramaniam S [50]
- Dick RA [49]
- Khusainov I [49]
- Lenz S [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Chen M [47]
- Kudryashev M [47]
- Berger C [46]
- Ni T [46]
- Shi Y [46]
- Zhao X [46]
- Chen L [45]
- Fernandez JJ [45]
- Vale RD [45]
- Yu Z [45]
- Dumoux M [44]
- Bork P [43]
- Naismith JH [43]
- Suslov S [43]
- Fronik S [42]
- Hendrixson DR [42]
- Mosalaganti S [42]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Alvarez Viar G [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Wang Z [40]
- Chakraborty S [39]
- Ishikawa T [39]
- Wang J [39]
- Zila V [39]
- Erdmann PS [38]
- Foerster F [38]
- Greenan GA [38]
- Margiotta E [38]
- Thader A [38]
- Zimmermann-kogadeeva M [38]
- Guichard P [37]
Author by ORCID
- Mahamid J [140]
- Beck M [140]
- Kreysing JP [106]
- Briggs JAG [92]
- Turonova B [88]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Agard DA [81]
- Engel BD [78]
- Forster F [77]
- Chiu W [77]
- Xue L [77]
- Kikkawa M [74]
- Hummer G [72]
- Guo Q [72]
- Oda T [71]
- Zhang P [69]
- Obarska-kosinska A [64]
- Kosinski J [63]
- Pilhofer M [59]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Pfeffer S [55]
- Welsch S [55]
- Schmid MF [55]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Liu J [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Khusainov I [49]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Kotecha A [48]
- Taniguchi R [47]
- Berger C [46]
- Hoffmann PC [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Nicastro D [39]
- Ludtke SJ [39]
- Chen M [39]
- Kudryashev M [39]
- Fronik S [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Sun F [38]
- Guichard P [37]
- Ni T [36]
- Weiss GL [36]
- Mosalaganti S [36]
- Hagen WJH [35]
- Zhu Y [34]
- Huiskonen JT [34]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Mattei S [32]
- Pigino G [32]
- Skinner WM [32]
- Chen Z [32]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Andino-frydman E [30]
- Hendrixson DR [28]
- Raunser S [28]
- Wang Z [28]
- Lishko PV [28]
- Zhou Y [27]
- Martinez-sanchez A [27]
- Bartesaghi A [27]
- Frydman J [27]
- Morado DR [27]
- Borgnia MJ [26]
- Zhu Y [26]
- Gautel M [26]
- Prazak V [25]
- Liu Y [25]
Journal
- NAT COMMUN [397]
- PNAS [244]
- SCIENCE [226]
- BIORXIV [221]
- NATURE [221]
- CELL [164]
- TO BE PUBLISHED [152]
- ELIFE [138]
- SCI ADV [121]
- NAT METHODS [113]
- NAT STRUCT MOL BIOL [99]
- EMBO J [84]
- NAT MICROBIOL [69]
- J CELL BIOL [67]
- MOL CELL [67]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [45]
- MBIO [35]
- CURR BIOL [32]
- EMBO REP [24]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- COMMUN BIOL [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- PLOS BIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- FASEB J [3]
- FEBS LETT [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [779]
- IMOD [404]
- DYNAMO [303]
- WARP [271]
- PEET [231]
- PYTOM [125]
- CTFFIND [115]
- MATLAB [106]
- EMAN2 [99]
- AV3 [81]
- NOVACTF [71]
- NOVASTA [61]
- EMCLARITY [60]
- TOM TOOLBOX [59]
- CHIMERA [58]
- STOPGAP [53]
- CRYOLO [49]
- CTFPHASEFLIP [49]
- TOM [49]
- IMOD, PEET [34]
- GCTF [32]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- SUBTOM [20]
- TOMO3D [19]
- UCSF CHIMERA [19]
- IMOD, TOMO3D, PEET [18]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- I3 [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- M [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- CRYOSPARC [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [1627]
- TFS KRIOS [460]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [84]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [21]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI/PHILIPS CM300FEG/T [10]
- FEI TECNAI ARCTICA [8]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
Electron Source
- FIELD EMISSION GUN [2840]
- LAB6 [49]
- OTHER [6]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [898]
- GATAN K3 BIOQUANTUM 6K X 4K [423]
- GATAN K3 6K X 4K [380]
- GATAN K2 QUANTUM 4K X 4K [281]
- FEI FALCON IV 4K X 4K [233]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TFS FALCON 4I 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [18]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- GATAN K2 BASE 4K X 4K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- UniProt [370]
- EMPIAR [324]
- PDBe-Kb [316]
- PDB [304]
- AlphaFold DB [230]
- InterPro [184]
- Pfam [179]
- Gene Ontology [173]
- ChEBI [53]
- ChEMBL [51]
- DrugBank [49]
- Complex Portal [29]
- SCOP2 [23]
Release date: Dec. 3, 2025
Resolution: 22.7 Å
EM Method: Subtomogram averaging
Resolution: 22.7 Å
EM Method: Subtomogram averaging
Lamm L, Zufferey S, Zhang H, Righetto RD, Waltz F, Wietrzynski W, Yamauchi KA, Burt A, Liu Y, Martinez-Sanchez A, Ziegler S, Isensee F, Schnabel JA, Engel BD, Peng T
bioRxiv (2025) [ DOI: doi:10.1101/2024.01.05.574336 ]
Release date: Dec. 3, 2025
Resolution: 15.92 Å
EM Method: Subtomogram averaging
Resolution: 15.92 Å
EM Method: Subtomogram averaging
Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R
To Be Published
Release date: Dec. 3, 2025
Resolution: 22.89 Å
EM Method: Subtomogram averaging
Resolution: 22.89 Å
EM Method: Subtomogram averaging
Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R
To Be Published
Release date: Dec. 3, 2025
Resolution: 13.67 Å
EM Method: Subtomogram averaging
Resolution: 13.67 Å
EM Method: Subtomogram averaging
Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R
To Be Published
Release date: Dec. 3, 2025
Resolution: 14.3 Å
EM Method: Subtomogram averaging
Resolution: 14.3 Å
EM Method: Subtomogram averaging
Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R
To Be Published
Release date: Dec. 3, 2025
Resolution: 7.76 Å
EM Method: Subtomogram averaging
Resolution: 7.76 Å
EM Method: Subtomogram averaging
Ehses K, Lopez-Alonso JP, Antico O, Abdussalam A, Muqit MMK, Ubarretxena-Belandia I, Fernandez-Busnadiego R
To Be Published
Release date: Dec. 3, 2025
Resolution: 27.7 Å
EM Method: Subtomogram averaging
Resolution: 27.7 Å
EM Method: Subtomogram averaging
Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N
Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]
Release date: Dec. 3, 2025
Resolution: 4.8 Å
EM Method: Subtomogram averaging
Resolution: 4.8 Å
EM Method: Subtomogram averaging
Peck A, Hutchings J, Schwartz J, Yu Y, Ermel UH, Kandel S, Kimanius D, Zhao Z, Zheng S, Artley B, List D, Silva SA, Reade W, Asuncion J, Evans K, Gadling J, Khandwala K, McCanny S, McCarthy DG, Ni JX, Pourroy J, Venkatakrishnan M, Wang ZS, Agard DA, Potter CS, Carragher B, Harrington K, Paraan M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.03.686153 ]
Release date: Dec. 3, 2025
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Peck A, Hutchings J, Schwartz J, Yu Y, Ermel UH, Kandel S, Kimanius D, Zhao Z, Zheng S, Artley B, List D, Silva SA, Reade W, Asuncion J, Evans K, Gadling J, Khandwala K, McCanny S, McCarthy DG, Ni JX, Pourroy J, Venkatakrishnan M, Wang ZS, Agard DA, Potter CS, Carragher B, Harrington K, Paraan M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.03.686153 ]
Release date: Dec. 3, 2025
Resolution: 5.0 Å
EM Method: Subtomogram averaging
Resolution: 5.0 Å
EM Method: Subtomogram averaging
Peck A, Hutchings J, Schwartz J, Yu Y, Ermel UH, Kandel S, Kimanius D, Zhao Z, Zheng S, Artley B, List D, Silva SA, Reade W, Asuncion J, Evans K, Gadling J, Khandwala K, McCanny S, McCarthy DG, Ni JX, Pourroy J, Venkatakrishnan M, Wang ZS, Agard DA, Potter CS, Carragher B, Harrington K, Paraan M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.03.686153 ]
Filter By
Current Database
- EMDB [2897]
Current status
- REL [2897]
Sample type
- Complex [1052]
- Cellular component [732]
- Protein [590]
- Cell [522]
- Virus [470]
- Sample [451]
- Ligand [56]
- RNA [47]
- Other [21]
- Tissue [18]
- DNA [2]
Organism
- Homo sapiens [442]
- Mus musculus [302]
- Chlamydomonas reinhardtii [240]
- Human immunodeficiency virus 1 [124]
- Escherichia coli [106]
- Saccharomyces cerevisiae [94]
- Tetrahymena thermophila [68]
- Mycoplasma pneumoniae [67]
- Severe acute respiratory syndrome coronavirus [64]
- Rattus norvegicus [63]
- Dictyostelium discoideum [48]
- Schizosaccharomyces pombe [32]
- Oryctolagus cuniculus [32]
- Borrelia burgdorferi [30]
- Sus scrofa [28]
- Bos taurus [28]
- Chikungunya virus [26]
- Drosophila melanogaster [26]
- Rous sarcoma virus [25]
- Campylobacter jejuni [25]
- Plasmodium falciparum [23]
- Xenopus laevis [23]
- Myxococcus xanthus [21]
- Vibrio cholerae [21]
- Human herpesvirus 1 [20]
- Caenorhabditis elegans [20]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [19]
- Escherichia coli [17]
- Sus scrofa [17]
- Measles morbillivirus [13]
- Danio rerio [13]
- (no species) [12]
- Vaccinia virus [12]
- Simian immunodeficiency virus [12]
- Primate t-lymphotropic virus 1 [12]
- Trypanosoma brucei [12]
- Human immunodeficiency virus 1 [12]
- Toxoplasma gondii [11]
- Mammalian orthoreovirus [10]
- Influenza a virus [10]
- Rift valley fever phlebovirus [10]
- Zaire ebolavirus [10]
- Synthetic construct [10]
- Legionella pneumophila [10]
- Equine infectious anemia virus [9]
- Streptococcus pneumoniae [9]
- Mycobacterium phage bxb1 [9]
- Toxoplasma gondii [9]
- Chaetomium thermophilum [9]
- Canis lupus [9]
- Unidentified influenza virus [8]
- Deltainfluenzavirus influenzae [8]
- Human herpesvirus 8 [8]
- Saccharomyces cerevisiae [8]
- Aggregatibacter actinomycetemcomitans [8]
- Salmonella enterica [8]
- (no species) [7]
- Enterobacteria phage t4 [7]
- Shigella flexneri [7]
- Synechococcus elongatus [7]
- Murine leukemia virus [7]
- Caulobacter vibrioides [7]
- Chaetomium thermophilum [7]
- Pseudomonas aeruginosa [7]
- Rotavirus a [7]
- Varicellovirus suidalpha1 [7]
- Campylobacter jejuni [7]
- Cryptosporidium parvum [7]
- Strongylocentrotus purpuratus [7]
- Equus caballus [7]
- Avian infectious bursal disease virus [6]
- Human respirovirus 3 [6]
- Flock house virus [6]
- Agricanvirus ray [6]
- Helicobacter pylori [6]
- Influenza a virus [6]
- Neospora caninum [6]
- Pseudoalteromonas luteoviolacea [6]
- Tetrahymena thermophila [6]
- Paramecium tetraurelia [6]
- Torpedo marmorata [6]
- Salmonella phage p22 [5]
- Human respiratory syncytial virus [5]
- Synechocystis sp. pcc 6803 [5]
- Lassa mammarenavirus [5]
- Enterovirus c [5]
- Orthoebolavirus zairense [5]
- Aureispira sp. ccb-qb1 [5]
- Pseudomonas phage 201phi2-1 [5]
- 2056194 [5]
- Eastern chimpanzee simian foamy virus [5]
- Porcine epidemic diarrhea virus [5]
- Mycoplasma genitalium [5]
- Porcine epidemic diarrhea virus [5]
- Teranympha mirabilis [5]
- Methanospirillum hungatei [5]
- Arabidopsis thaliana [5]
- Synechococcus virus syn5 [5]
- Trypanosoma brucei [5]
- Saccharomyces cerevisiae [5]
EM Method
- Subtomogram averaging [2897]
Resolution
- < 2Å [3]
- ≥ 2Å and < 3Å [9]
- ≥ 3Å and < 4Å [65]
- ≥ 4Å and < 5Å [86]
- ≥ 5Å and < 6Å [43]
- ≥ 6Å and < 8Å [215]
- ≥ 8Å and < 12Å [435]
- ≥ 12Å and < 16Å [233]
- ≥ 16Å and < 20Å [204]
- ≥ 20Å and < 30Å [563]
- ≥ 30Å [944]
Model molecular weight
- 0-50 kDa [13]
- 50-100 kDa [16]
- 100-250 kDa [74]
- 250-500 kDa [53]
- 500-1000 kDa [47]
- 1-2 MDa [35]
- 2-5 MDa [48]
- 5-10 MDa [7]
- > 10 MDa [10]
Release Date
- 2025 [416]
- 2024 [494]
- 2023 [371]
- 2022 [351]
- 2021 [217]
- 2020 [178]
- 2019 [144]
- 2018 [128]
- 2017 [107]
- 2016 [123]
- 2015 [74]
- 2014 [73]
- 2013 [82]
- 2012 [69]
- 2011 [24]
- 2010 [18]
- 2009 [11]
- 2008 [4]
- 2007 [5]
- 2006 [8]
Author by name
- Beck M [234]
- Mahamid J [149]
- Liu J [141]
- Baumeister W [139]
- Turonova B [138]
- Plitzko JM [125]
- Briggs JAG [117]
- Zhang P [111]
- Kreysing JP [106]
- Agard DA [103]
- Jensen GJ [101]
- Li S [98]
- Zhu Y [96]
- Engel BD [87]
- Grange M [84]
- Chang YW [81]
- Chiu W [81]
- Beck F [80]
- Kikkawa M [80]
- Forster F [77]
- Krausslich HG [77]
- Xue L [77]
- Guo Q [76]
- Villa E [76]
- Welsch S [75]
- Schmid MF [73]
- Hummer G [72]
- Oda T [71]
- Schaffer M [71]
- Obarska-kosinska A [69]
- Pfeffer S [69]
- Schur FKM [69]
- Taniguchi R [68]
- Yanagisawa H [67]
- Obr M [65]
- Hutchings J [64]
- Beeby M [63]
- Kosinski J [63]
- Pilhofer M [63]
- Bartesaghi A [62]
- Bui KH [62]
- Xu J [61]
- Wan W [60]
- Cramer P [58]
- Pigino G [58]
- Tegunov D [57]
- Rappsilber J [55]
- Briggs JA [54]
- Nicastro D [54]
- Cruz-leon S [53]
- Kotecha A [53]
- Li Z [52]
- Zimmerli CE [52]
- Fedry J [51]
- Grunewald K [51]
- Hoffmann PC [51]
- Martinez-sanchez A [51]
- Sun F [51]
- Subramaniam S [50]
- Dick RA [49]
- Khusainov I [49]
- Lenz S [49]
- Xing H [49]
- Zhou ZH [49]
- Chang Y-W [48]
- Chen M [47]
- Kudryashev M [47]
- Berger C [46]
- Ni T [46]
- Shi Y [46]
- Zhao X [46]
- Chen L [45]
- Fernandez JJ [45]
- Vale RD [45]
- Yu Z [45]
- Dumoux M [44]
- Bork P [43]
- Naismith JH [43]
- Suslov S [43]
- Fronik S [42]
- Hendrixson DR [42]
- Mosalaganti S [42]
- Howes SC [41]
- Klena N [41]
- Toro-nahuelpan M [41]
- Alvarez Viar G [40]
- Klumpe S [40]
- Ludtke SJ [40]
- Wang Z [40]
- Chakraborty S [39]
- Ishikawa T [39]
- Wang J [39]
- Zila V [39]
- Erdmann PS [38]
- Foerster F [38]
- Greenan GA [38]
- Margiotta E [38]
- Thader A [38]
- Zimmermann-kogadeeva M [38]
- Guichard P [37]
Author by ORCID
- Mahamid J [140]
- Beck M [140]
- Kreysing JP [106]
- Briggs JAG [92]
- Turonova B [88]
- Plitzko JM [84]
- Grange M [82]
- Chang YW [81]
- Agard DA [81]
- Engel BD [78]
- Forster F [77]
- Chiu W [77]
- Xue L [77]
- Kikkawa M [74]
- Hummer G [72]
- Guo Q [72]
- Oda T [71]
- Zhang P [69]
- Obarska-kosinska A [64]
- Kosinski J [63]
- Pilhofer M [59]
- Yanagisawa H [58]
- Schur FKM [58]
- Cramer P [57]
- Baumeister W [56]
- Pfeffer S [55]
- Welsch S [55]
- Schmid MF [55]
- Rappsilber J [53]
- Li S [53]
- Bui KH [53]
- Liu J [52]
- Briggs JA [52]
- Zimmerli CE [52]
- Khusainov I [49]
- Grunewald K [49]
- Xing H [49]
- Krausslich HG [49]
- Lenz S [49]
- Kotecha A [48]
- Taniguchi R [47]
- Berger C [46]
- Hoffmann PC [46]
- Schaffer M [45]
- Dumoux M [44]
- Fernandez JJ [44]
- Subramaniam S [44]
- Bork P [43]
- Wan W [43]
- Toro-nahuelpan M [41]
- Zhou ZH [41]
- Nicastro D [39]
- Ludtke SJ [39]
- Chen M [39]
- Kudryashev M [39]
- Fronik S [39]
- Zimmermann-kogadeeva M [38]
- Beeby M [38]
- Sun F [38]
- Guichard P [37]
- Ni T [36]
- Weiss GL [36]
- Mosalaganti S [36]
- Hagen WJH [35]
- Zhu Y [34]
- Huiskonen JT [34]
- Watson H [34]
- Rettberg LA [34]
- Chakraborty S [34]
- Li S [34]
- Des Georges A [34]
- Echeverria I [33]
- Mattei S [32]
- Pigino G [32]
- Skinner WM [32]
- Chen Z [32]
- Hagen WJ [31]
- Faller WJ [31]
- Yin G [31]
- Ke Z [31]
- Ricana CL [31]
- Mechulam Y [31]
- Briegel A [31]
- Tai L [30]
- Vale RD [30]
- Andino-frydman E [30]
- Hendrixson DR [28]
- Raunser S [28]
- Wang Z [28]
- Lishko PV [28]
- Zhou Y [27]
- Martinez-sanchez A [27]
- Bartesaghi A [27]
- Frydman J [27]
- Morado DR [27]
- Borgnia MJ [26]
- Zhu Y [26]
- Gautel M [26]
- Prazak V [25]
- Liu Y [25]
Journal
- NAT COMMUN [397]
- PNAS [244]
- SCIENCE [226]
- BIORXIV [221]
- NATURE [221]
- CELL [164]
- TO BE PUBLISHED [152]
- ELIFE [138]
- SCI ADV [121]
- NAT METHODS [113]
- NAT STRUCT MOL BIOL [99]
- EMBO J [84]
- NAT MICROBIOL [69]
- J CELL BIOL [67]
- MOL CELL [67]
- MOL BIOL CELL [60]
- PLOS PATHOG [55]
- J STRUCT BIOL [49]
- J VIROL [48]
- STRUCTURE [45]
- MBIO [35]
- CURR BIOL [32]
- EMBO REP [24]
- MOL MICROBIOL [22]
- CELL DISCOV [21]
- COMMUN BIOL [21]
- CELL RES [20]
- LIFE SCI ALLIANCE [19]
- NAT CELL BIOL [17]
- J CELL SCI [15]
- NAT PLANTS [15]
- CELL REP [14]
- J BACTERIOL [14]
- PLOS BIOL [14]
- CELL HOST MICROBE [13]
- DEV CELL [13]
- SCI REP [13]
- J MOL BIOL [12]
- NUCLEIC ACIDS RES [10]
- FRONT CELL INFECT MICROBIOL [9]
- OPEN BIOL [9]
- CYTOSKELETON [8]
- PLOS ONE [8]
- J BIOL CHEM [6]
- PLOS GENET [6]
- SIGNAL TRANSDUCT TARGET THER [6]
- FRONT MICROBIOL [5]
- ISCIENCE [5]
- PLOS NEGL TROP DIS [5]
- INT J MOL SCI [4]
- NAT PROTOC [4]
- BIOCHEMISTRY [3]
- FASEB J [3]
- FEBS LETT [3]
- MSPHERE [3]
- PROTEIN CELL [3]
- VIRUSES [3]
- BIOMACROMOLECULES [2]
- FEBS J [2]
- GENES CELLS [2]
- J FUNGI [2]
- J GEN VIROL [2]
- J.BIOCHEM. [2]
- NAT NEUROSCI [2]
- ACTA CRYSTALLOGR D STRUCT BIOL [1]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
- ADV SCI [1]
- BIOCHEM J [1]
- BIOL IMAGING [1]
- BIOMOLECULES [1]
- CELLS [1]
- FEBS OPEN BIO [1]
- FRONT CELL DEV BIOL [1]
- FRONT MOL BIOSCI [1]
- INFECT.IMMUN. [1]
- J MUSCLE RES CELL MOTIL [1]
- J.MUSCLE RES.CELL.MOTIL. [1]
- NANOTECHNOL RUSSIA [1]
- PLANT PHYSIOL [1]
- PNAS NEXUS [1]
- PROTEIN SCI [1]
- SELECTING OPTIMAL SUPPORT GRIDS FOR SUPER-RESOLUTION CRYOGENIC CORRELATED LIGHT AND ELECTRON MICROSCOPY [1]
Software
- RELION [779]
- IMOD [404]
- DYNAMO [303]
- WARP [271]
- PEET [231]
- PYTOM [125]
- CTFFIND [115]
- MATLAB [106]
- EMAN2 [99]
- AV3 [81]
- NOVACTF [71]
- NOVASTA [61]
- EMCLARITY [60]
- TOM TOOLBOX [59]
- CHIMERA [58]
- STOPGAP [53]
- CRYOLO [49]
- CTFPHASEFLIP [49]
- TOM [49]
- IMOD, PEET [34]
- GCTF [32]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- SUBTOM [20]
- TOMO3D [19]
- UCSF CHIMERA [19]
- IMOD, TOMO3D, PEET [18]
- EMAN [16]
- ETOMO [16]
- PROTOMO [16]
- IMOD, DYNAMO [15]
- IMOD, TOMO3D [15]
- XMIPP [14]
- IMOD, RAPTOR, PROTOMO [13]
- PEET, RUBY-HELIX [13]
- SPIDER [12]
- CISTEM [11]
- IMOD, PROTOMO [11]
- AMIRA [10]
- IMOD, BSOFT [10]
- AMIRAFPM [9]
- BSOFT [9]
- I3 [9]
- TOM, AV3 [9]
- TOM, TOOLBOX, BSOFT, XMIPP [9]
- TOMOCTF [9]
- EMIRA [8]
- UCSF CHIMERAX [8]
- IMOD, PROTOMO, I3, EMAN [7]
- IMOD, TOM, AV3 [7]
- AV3, TOM, PYTOM [6]
- I3, PROTOMO [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- IMOD, PRIISM/IVE [6]
- PYTOM, TOM_TOOLBOX, AV3_TOOLBOX [6]
- XMIPP, ML, TOMO [6]
- IMOD, TOM, PACKAGE, MATLAB [5]
- M [5]
- IMOD AND BSOFT [4]
- IMOD, EMAN, EMAN2, TOMOHUNTER [4]
- IMOD, ETOMO, , PEET , SPIDER [4]
- IMOD, PEET, BSOFT [4]
- IMOD/PEET [4]
- IPET, AND, FETR [4]
- JSUBTOMO [4]
- PROJALIGN [4]
- SUPER-SAMPLING SART [4]
- 3DMOD [3]
- IMOD, XMIPP, TOMO3D [3]
- TOM, AV3, PYTOM [3]
- TOM/AV3, MATLAB [3]
- TOMOALIGN [3]
- CHIMERA, SEGGER [2]
- CRYODRGN [2]
- EM [2]
- ETOMO, DYNAMO [2]
- ETOMO, TOM, PYTOM [2]
- IMOD, BSOFT, JSUBTOMO [2]
- IMOD, EMAN2 [2]
- IMOD, PEET, BSOFT, EMAN2, SPARX [2]
- IMOD, PEET, SPIDER [2]
- IMOD, SPIDER, BSOFT [2]
- IMOD, TOMO3D, RELION [2]
- IMOD, TOMOHUNTER [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET [2]
- MOTIONCORR, IMOD, TOMOCTF, PEET, BSOFT [2]
- MRC, IMOD, IVE [2]
- PROTOMO AND I3 [2]
- PROTOMO, IMOD [2]
- APPION [1]
- BSOFT, JSUBTOMO [1]
- CHIMERA, FLEX-EM, ADP-EM, GMFIT, TEMPY [1]
- CHIMERA, MDFF [1]
- CHIMERA, VMD, MDFF [1]
- CHIMERA, X-PLOR [1]
- COMET [1]
- COOT [1]
- CRYOSPARC [1]
- EM-PACKAGE, TOM FOR MATLAB [1]
- EMAN, HIMPOSE, SPIDER [1]
- EMAN1 [1]
Microscope
- FEI TITAN KRIOS [1627]
- TFS KRIOS [460]
- FEI POLARA 300 [293]
- FEI TALOS ARCTICA [84]
- FEI TECNAI F20 [71]
- FEI TECNAI F30 [50]
- FEI TECNAI 20 [46]
- JEOL 2200FS [45]
- JEOL 3100FFC [44]
- FEI TITAN [39]
- TFS GLACIOS [21]
- OTHER [20]
- FEI TECNAI 12 [17]
- JEOL 3200FSC [16]
- JEOL 2100 [13]
- FEI/PHILIPS CM300FEG/T [10]
- FEI TECNAI ARCTICA [8]
- JEOL 3100FEF [7]
- TFS TALOS [7]
- JEOL 2010F [5]
- JEOL 2200FSC [5]
- FEI/PHILIPS CM300FEG/ST [4]
- FEI/PHILIPS CM200FEG [3]
- JEOL 2100F [3]
Electron Source
- FIELD EMISSION GUN [2840]
- LAB6 [49]
- OTHER [6]
- TUNGSTEN HAIRPIN [2]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [898]
- GATAN K3 BIOQUANTUM 6K X 4K [423]
- GATAN K3 6K X 4K [380]
- GATAN K2 QUANTUM 4K X 4K [281]
- FEI FALCON IV 4K X 4K [233]
- GATAN ULTRASCAN 4000 4K X 4K [86]
- TFS FALCON 4I 4K X 4K [86]
- TVIPS TEMCAM-F416 4K X 4K [70]
- GATAN ULTRASCAN 1000 2K X 2K [65]
- FEI FALCON II 4K X 4K [62]
- GENERIC CCD [47]
- GATAN MULTISCAN [33]
- TVIPS TEMCAM-F415 4K X 4K [31]
- FEI FALCON III 4K X 4K [27]
- GATAN K2 4K X 4K [26]
- GATAN K3 BIOCONTINUUM 6K X 4K [18]
- GENERIC GATAN [18]
- DIRECT ELECTRON DE-20 5K X 3K [15]
- TVIPS TEMCAM-F216 2K X 2K [10]
- FEI FALCON I 4K X 4K [9]
- OTHER [7]
- FEI EAGLE 4K X 4K [6]
- GENERIC GATAN 2K X 2K [6]
- GENERIC TVIPS 4K X 4K [6]
- DIRECT ELECTRON DE-12 4K X 3K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- GATAN K2 BASE 4K X 4K [4]
- DIRECT ELECTRON DE-16 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- GATAN ORIUS SC200 2K X 2K [1]
- GENERIC GATAN 4K X 4K [1]
External links
- UniProt [370]
- EMPIAR [324]
- PDBe-Kb [316]
- PDB [304]
- AlphaFold DB [230]
- InterPro [184]
- Pfam [179]
- Gene Ontology [173]
- ChEBI [53]
- ChEMBL [51]
- DrugBank [49]
- Complex Portal [29]
- SCOP2 [23]