Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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startup_PDB_model_sgt:*FDW

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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [3]
  • Protein [3]

Organism

  • Severe acute respiratory syndrome coronavirus [6]
  • Homo sapiens [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2025 [6]

Author by name

  • Allen J [4]
  • Chen B [4]
  • Jonaid G [4]
  • Jonaid GM [4]
  • Kibria MG [4]
  • Lu J [4]
  • Peng H [4]
  • Rits-volloch S [4]
  • Shi W [4]
  • Walsh RM [4]
  • Wang S [4]
  • Zhu H [4]
  • Chen Z [2]
  • Hao A [2]
  • Jiang S [2]
  • Liu Q [2]
  • Liu Z [2]
  • Lu L [2]
  • Mao Q [2]
  • Sun L [2]
  • Wang Q [2]
  • Wang X [2]
  • Xia S [2]
  • Xing L [2]
  • Xu W [2]
  • Zhang G [2]
  • Zhang X [2]

Author by ORCID

  • Kibria MG [4]
  • Shi W [4]
  • Peng H [4]
  • Chen B [4]
  • Walsh RM [4]
  • Allen J [4]

Journal

  • NAT COMMUN [4]
  • CELL [2]

Software

  • CRYOSPARC [2]

Microscope

  • TFS KRIOS [4]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • TFS FALCON 4I 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • PDB [3]
  • PDBe-Kb [3]
  • UniProt [3]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • AlphaFold DB [1]
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EMD-49912
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3D View
Cryo-EM structure of SARS-CoV-2 spike S2 trimer
Release date: Dec. 31, 2025
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 9nxy
Q-score: 0.495

Shi W, Jonaid GM, Kibria MG, Allen J, Peng H, Rits-Volloch S, Zhu H, Wang S, Walsh RM, Lu J, Chen B

Nat Commun (2025) [ Pubmed: 41309650 DOI: doi:10.1038/s41467-025-66693-w ]

EMD-49917
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3D View
Cryo-EM structure of SARS-CoV-2 spike S2 trimer local map 1
Release date: Dec. 31, 2025
Resolution: 3.04 Å
EM Method: Single-particle

Shi W, Jonaid GM, Kibria MG, Allen J, Peng H, Rits-Volloch S, Zhu H, Wang S, Walsh RM, Lu J, Chen B

Nat Commun (2025) [ Pubmed: 41309650 DOI: doi:10.1038/s41467-025-66693-w ]

EMD-49918
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3D View
Cryo-EM structure of SARS-CoV-2 spike S2 trimer local map 2
Release date: Dec. 31, 2025
Resolution: 2.82 Å
EM Method: Single-particle

Shi W, Jonaid GM, Kibria MG, Allen J, Peng H, Rits-Volloch S, Zhu H, Wang S, Walsh RM, Lu J, Chen B

Nat Commun (2025) [ Pubmed: 41309650 DOI: doi:10.1038/s41467-025-66693-w ]

EMD-49921
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3D View
Cryo-EM structure of SARS-CoV-2 spike S2 trimer dimer of trimer
Release date: Dec. 31, 2025
Resolution: 6.8 Å
EM Method: Single-particle

Shi W, Jonaid GM, Kibria MG, Allen J, Peng H, Rits-Volloch S, Zhu H, Wang S, Walsh RM, Lu J, Chen B

Nat Commun (2025) [ Pubmed: 41309650 DOI: doi:10.1038/s41467-025-66693-w ]

EMD-39813
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3D View
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation E-FIC focused refinement of intact S2
Release date: Feb. 5, 2025
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8z7g
Q-score: 0.486

Xing L, Liu Z, Wang X, Liu Q, Xu W, Mao Q, Zhang X, Hao A, Xia S, Liu Z, Sun L, Zhang G, Wang Q, Chen Z, Jiang S, Sun L, Lu L

Cell (2025) 188 pp. 1297-1314.e24 [ DOI: doi:10.1016/j.cell.2025.01.012 Pubmed: 39889696 ]

EMD-39822
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation E-FIC
Release date: Feb. 5, 2025
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8z7p
Q-score: 0.234

Xing L, Liu Z, Wang X, Liu Q, Xu W, Mao Q, Zhang X, Hao A, Xia S, Liu Z, Sun L, Zhang G, Wang Q, Chen Z, Jiang S, Sun L, Lu L

Cell (2025) 188 pp. 1297-1314.e24 [ DOI: doi:10.1016/j.cell.2025.01.012 Pubmed: 39889696 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [3]
  • Protein [3]

Organism

  • Severe acute respiratory syndrome coronavirus [6]
  • Homo sapiens [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2025 [6]

Author by name

  • Allen J [4]
  • Chen B [4]
  • Jonaid G [4]
  • Jonaid GM [4]
  • Kibria MG [4]
  • Lu J [4]
  • Peng H [4]
  • Rits-volloch S [4]
  • Shi W [4]
  • Walsh RM [4]
  • Wang S [4]
  • Zhu H [4]
  • Chen Z [2]
  • Hao A [2]
  • Jiang S [2]
  • Liu Q [2]
  • Liu Z [2]
  • Lu L [2]
  • Mao Q [2]
  • Sun L [2]
  • Wang Q [2]
  • Wang X [2]
  • Xia S [2]
  • Xing L [2]
  • Xu W [2]
  • Zhang G [2]
  • Zhang X [2]

Author by ORCID

  • Kibria MG [4]
  • Shi W [4]
  • Peng H [4]
  • Chen B [4]
  • Walsh RM [4]
  • Allen J [4]

Journal

  • NAT COMMUN [4]
  • CELL [2]

Software

  • CRYOSPARC [2]

Microscope

  • TFS KRIOS [4]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • TFS FALCON 4I 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • PDB [3]
  • PDBe-Kb [3]
  • UniProt [3]
  • Gene Ontology [2]
  • InterPro [2]
  • Pfam [2]
  • AlphaFold DB [1]