Electron Microscopy Data Bank

Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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sample_name:"binary complex"

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Current Database

Current status

Sample type

Organism

Homo sapiens [51]
Rattus norvegicus [20]
Cricetulus griseus [19]
Saccharomyces cerevisiae [11]
Synthetic construct [10]
Escherichia coli [9]
Sus scrofa [8]
Mycobacterium tuberculosis [7]
Candidatus scalindua brodae [7]
Saccharomyces cerevisiae [7]
Bos taurus [7]
Adeno-associated dependoparvovirus b [5]
Arabidopsis thaliana [4]
Alkalihalobacillus clausii [4]
Mus musculus [3]
Bacillus cereus [3]
Pyrococcus abyssi [3]
Desulfonema ishimotonii [3]
Plasmodium falciparum [3]
Ruminococcus sp. xpd3002 [2]
Neisseria lactamica [2]
Serratia marcescens [2]
Rhodobacter phage rcnl1 [2]
Escherichia coli [2]
Sulfolobus islandicus [2]
Enterobacteria phage t4 [1]
Adeno-associated dependoparvovirus a [1]
Clostridium sp. maddingley mbc34-26 [1]
(no species) [1]
Deinococcus radiodurans [1]
Thermoanaerobaculum aquaticum [1]
Thermoflavifilum thermophilum [1]
Bacillus subtilis [1]
Bacterium [1]
Bacteroidota bacterium [1]
Ruminococcus sp. uba7013 [1]
Bacteroidetes bacterium hgw-bacteroidetes-12 [1]
Deinococcus radiodurans [1]
Severe acute respiratory syndrome coronavirus [1]
Geobacillus stearothermophilus [1]
Mycoplasma pneumoniae [1]
Cloning vector pgrna-ccdb-1 [1]
(no species) [1]
Kluyveromyces lactis [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Kluyveromyces lactis [1]
Scytonema hofmannii [1]
Thermococcus onnurineus [1]
Plasmodium falciparum [1]
(no species) [1]
[eubacterium] siraeum [1]
Triticum monococcum [1]
Leptotrichia buccalis [1]
Puccinia graminis [1]
Klebsiella pneumoniae [1]
Caenorhabditis elegans [1]
Adeno-associated dependoparvovirus a [1]
Thermoclostridium caenicola [1]
Vibrio cholerae [1]
Escherichia coli [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Balaji A [20]
Brunger AT [20]
Couoh-cardel S [20]
Diao J [20]
Esquivies L [20]
Khan YA [20]
Pfuetzner RA [20]
Qiu K [20]
White KI [20]
Chapman MS [11]
Hu G [11]
Stagg SM [11]
Hu GQ [10]
Nureki O [10]
Silveria MA [10]
Zane GM [10]
Huang HD [9]
Jia N [9]
Li H [9]
Li Z [9]
Wang C [9]
Baron JL [8]
Bondesson AJ [8]
Campbell MG [8]
Cheng Y [8]
Cormier A [8]
Huang H [8]
Ito S [8]
Lou J [8]
Lyons JA [8]
Marks JD [8]
Nishimura SL [8]
Nissen P [8]
Seed RI [8]
Timcenko M [8]
Akashi T [7]
Boesen T [7]
Cui N [7]
Dieudonne T [7]
Hiraizumi M [7]
Kovach A [7]
Kumanomidou T [7]
Lenoir G [7]
Li J [7]
Miyaguchi I [7]
Montigny C [7]
Xiao X [7]
Zhang JT [7]
Hattori T [6]
Koide A [6]
Koide S [6]
Liu XY [6]
Maso L [6]
Neel BG [6]
Rajak E [6]
Wang X [6]
Zhang Y [6]
Zhao M [6]
Cheng R [5]
Kishida H [5]
Li X [5]
Liu X [5]
Murasaki K [5]
Sun Y [5]
Torimoto N [5]
Wang L [5]
Xiao J [5]
Xie Y [5]
Zhu B [5]
Banco MT [4]
Barile A [4]
Bolognesi M [4]
Chaves Sanjuan A [4]
Chaves-sanjuan A [4]
Contestabile R [4]
Darwin KH [4]
Di Salvo Ml [4]
Erramilli S [4]
Exertier C [4]
Feng X [4]
Ferre-D Amare Ar [4]
Freda I [4]
Gugole E [4]
Harmer NJ [4]
Isupov MN [4]
Jiang J [4]
Kossiakoff AA [4]
Lahiri I [4]
Li Y [4]
Lodwick JE [4]
Montemiglio LC [4]
Montoya G [4]
Myong S [4]
Paul T [4]
Ritchey S [4]
Roganowicz K [4]
Savino C [4]
Scipioni A [4]
Shen R [4]
Swuec P [4]

Author by ORCID

Brunger AT [20]
White KI [20]
Balaji A [20]
Couoh-cardel S [20]
Khan YA [20]
Diao J [20]
Chapman MS [11]
Stagg SM [11]
Cheng Y [8]
Jia N [8]
Cormier A [8]
Seed RI [8]
Timcenko M [8]
Nureki O [8]
Campbell MG [8]
Nishimura SL [8]
Li H [7]
Boesen T [7]
Xiao X [7]
Lenoir G [7]
Nissen P [7]
Koide S [6]
Zhao M [6]
Maso L [6]
Hattori T [6]
Neel BG [6]
Rajak E [6]
Xie Y [5]
Huang H [5]
Akashi T [5]
Hiraizumi M [5]
Wang L [5]
Zhu B [5]
Miyaguchi I [5]
Xiao J [5]
Cheng R [5]
Li J [5]
Erramilli S [4]
Barile A [4]
Savino C [4]
Harmer NJ [4]
Montemiglio LC [4]
Darwin KH [4]
Contestabile R [4]
Tramonti A [4]
Lahiri I [4]
Montoya G [4]
Bolognesi M [4]
Lyons JA [4]
Kossiakoff AA [4]
Chaves-sanjuan A [4]
Roganowicz K [4]
Ritchey S [4]
Fay A [3]
Sun Y [3]
Dieudonne T [3]
Glickman MS [3]
Xia S [3]
Borgnia MJ [3]
Matthies D [3]
Pape T [3]
Zatopek KM [3]
Ouyang S [3]
Sauguet L [3]
Kovach A [3]
Kuhlbrandt W [3]
Karlsen JL [3]
Bang I [3]
Delarue M [3]
Moeller A [3]
Wang L [3]
Subramaniam S [3]
Wang Z [3]
Kato Y [2]
Lin J [2]
Ke A [2]
Pata JD [2]
Chang J [2]
Stopfer LE [2]
Yuan K [2]
Tajiri M [2]
Liu X [2]
Zhou X [2]
Liu X [2]
Tang X [2]
Meng Y [2]
Chai J [2]
Robinson CV [2]
Kumari A [2]
Nogi T [2]
Fuglsang A [2]
Toenjes ST [2]
Hirose M [2]
Oyejobi GK [2]
Yu D [2]
Garcia KC [2]
Wu D [2]
Rader C [2]
Tong L [2]
Miyake T [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 159. Page 1 of 16

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EMD-51635

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P116 from Mycoplasma pneumoniae in complex with mild growth suppressor monoclonal antibody

Release date: Dec. 24, 2025
Resolution: 5.06 Å
EM Method: Single-particle
Fitted PDBs: 9gvg
Q-score: 0.128

Vizarraga D, Marcos M, Rotllan N, Martin J, Santos D, Camacho M, Soto B, Velasco-Reniu L, Guerra P, Pareja F, Collantes M, Wu W, Rodriguez-Arce I, Serrano L, Pinol J, Fita I, Escola-Gil JC

Nat Commun (2025) 16 pp. 11159-11159 [ Pubmed: 41402265 DOI: doi:10.1038/s41467-025-66129-5 ]

EMD-52275

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Structure of Ba1Cas12a3 binary complex

Release date: Dec. 17, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9hlx
Q-score: 0.417

Yuan B, Heinz DW

To Be Published

EMD-62630

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Structure of human B0AT1-ACE2

Release date: Dec. 10, 2025
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 9kxw
Q-score: 0.586

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

EMD-62631

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Inward-open Structure of human B0AT1

Release date: Dec. 10, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9kxx
Q-score: 0.552

Imazu T, Akashi T, Hiraizumi M, Inui Y, Sasaki W, Takahashi T, Todoroki H, Kumanomidou T, Hisano H, Asada H, Kusakizako T, Nishizawa T, Iwata S, Nureki O, Miyaguchi I

To Be Published

EMD-48405

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CRISPR-associated deaminase Cad1 in cA4 bound in hexamer form refined against the consensus map

Release date: Nov. 12, 2025
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 9mmw
Q-score: 0.514

Whyms C, Zhao Y, Addo-Yobo D, He H, Whittington AC, Trasanidou D, Salazar CRP, Staals RHJ, Li H

EMBO J (2025) 44 pp. 6919-6943 [ Pubmed: 41107544 DOI: doi:10.1038/s44318-025-00578-y ]

EMD-53378

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apPol-DNA complex binary 1

Release date: Oct. 29, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9quj
Q-score: 0.355

Kumari A, Enache T, Craggs TD, Pata JD, Lahiri I

Nucleic Acids Res (2025) 53 [ Pubmed: 41099714 DOI: doi:10.1093/nar/gkaf1005 ]

EMD-53379

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apPol-nucleotide complex

Release date: Oct. 29, 2025
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9qun
Q-score: 0.321

Kumari A, Enache T, Craggs TD, Pata JD, Lahiri I

Nucleic Acids Res (2025) 53 [ Pubmed: 41099714 DOI: doi:10.1093/nar/gkaf1005 ]

EMD-49361

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Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A 02

Release date: Oct. 8, 2025
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9nfb
Q-score: 0.542

Maso L, Mosure SA, Rodriguez-Aponte SA, Pizzo A, Mensah DN, Southard M, Sze S, Vash B, Hattori T, Rajak E, Koide A, Neel BG, Koide S, Liu W, Toenjes ST, DaSilva-Jardine P, Chopra R, Rader C, Stopfer LE

To Be Published

EMD-49362

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Structure of the cross-HLA supertype antibody R302 bound to a class I MHC presenting a divarasib-modified KRAS-G12C peptide on HLA-A 03

Release date: Oct. 8, 2025
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9nfc
Q-score: 0.641

To Be Published

EMD-63530

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RfxCas13d-crRNA binary complex

Release date: Oct. 8, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9lzt
Q-score: 0.48

Yang QX, Sun YF

To Be Published

Sort by: Download

Showing 1 - 10 of 159. Page 1 of 16

Display:

Statistics

Download

Select database:

EMDB [159]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [51]
Rattus norvegicus [20]
Cricetulus griseus [19]
Saccharomyces cerevisiae [11]
Synthetic construct [10]
Escherichia coli [9]
Sus scrofa [8]
Mycobacterium tuberculosis [7]
Candidatus scalindua brodae [7]
Saccharomyces cerevisiae [7]
Bos taurus [7]
Adeno-associated dependoparvovirus b [5]
Arabidopsis thaliana [4]
Alkalihalobacillus clausii [4]
Mus musculus [3]
Bacillus cereus [3]
Pyrococcus abyssi [3]
Desulfonema ishimotonii [3]
Plasmodium falciparum [3]
Ruminococcus sp. xpd3002 [2]
Neisseria lactamica [2]
Serratia marcescens [2]
Rhodobacter phage rcnl1 [2]
Escherichia coli [2]
Sulfolobus islandicus [2]
Enterobacteria phage t4 [1]
Adeno-associated dependoparvovirus a [1]
Clostridium sp. maddingley mbc34-26 [1]
(no species) [1]
Deinococcus radiodurans [1]
Thermoanaerobaculum aquaticum [1]
Thermoflavifilum thermophilum [1]
Bacillus subtilis [1]
Bacterium [1]
Bacteroidota bacterium [1]
Ruminococcus sp. uba7013 [1]
Bacteroidetes bacterium hgw-bacteroidetes-12 [1]
Deinococcus radiodurans [1]
Severe acute respiratory syndrome coronavirus [1]
Geobacillus stearothermophilus [1]
Mycoplasma pneumoniae [1]
Cloning vector pgrna-ccdb-1 [1]
(no species) [1]
Kluyveromyces lactis [1]
Dna molecule [1]
Pseudomonas aeruginosa [1]
Kluyveromyces lactis [1]
Scytonema hofmannii [1]
Thermococcus onnurineus [1]
Plasmodium falciparum [1]
(no species) [1]
[eubacterium] siraeum [1]
Triticum monococcum [1]
Leptotrichia buccalis [1]
Puccinia graminis [1]
Klebsiella pneumoniae [1]
Caenorhabditis elegans [1]
Adeno-associated dependoparvovirus a [1]
Thermoclostridium caenicola [1]
Vibrio cholerae [1]
Escherichia coli [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Balaji A [20]
Brunger AT [20]
Couoh-cardel S [20]
Diao J [20]
Esquivies L [20]
Khan YA [20]
Pfuetzner RA [20]
Qiu K [20]
White KI [20]
Chapman MS [11]
Hu G [11]
Stagg SM [11]
Hu GQ [10]
Nureki O [10]
Silveria MA [10]
Zane GM [10]
Huang HD [9]
Jia N [9]
Li H [9]
Li Z [9]
Wang C [9]
Baron JL [8]
Bondesson AJ [8]
Campbell MG [8]
Cheng Y [8]
Cormier A [8]
Huang H [8]
Ito S [8]
Lou J [8]
Lyons JA [8]
Marks JD [8]
Nishimura SL [8]
Nissen P [8]
Seed RI [8]
Timcenko M [8]
Akashi T [7]
Boesen T [7]
Cui N [7]
Dieudonne T [7]
Hiraizumi M [7]
Kovach A [7]
Kumanomidou T [7]
Lenoir G [7]
Li J [7]
Miyaguchi I [7]
Montigny C [7]
Xiao X [7]
Zhang JT [7]
Hattori T [6]
Koide A [6]
Koide S [6]
Liu XY [6]
Maso L [6]
Neel BG [6]
Rajak E [6]
Wang X [6]
Zhang Y [6]
Zhao M [6]
Cheng R [5]
Kishida H [5]
Li X [5]
Liu X [5]
Murasaki K [5]
Sun Y [5]
Torimoto N [5]
Wang L [5]
Xiao J [5]
Xie Y [5]
Zhu B [5]
Banco MT [4]
Barile A [4]
Bolognesi M [4]
Chaves Sanjuan A [4]
Chaves-sanjuan A [4]
Contestabile R [4]
Darwin KH [4]
Di Salvo Ml [4]
Erramilli S [4]
Exertier C [4]
Feng X [4]
Ferre-D Amare Ar [4]
Freda I [4]
Gugole E [4]
Harmer NJ [4]
Isupov MN [4]
Jiang J [4]
Kossiakoff AA [4]
Lahiri I [4]
Li Y [4]
Lodwick JE [4]
Montemiglio LC [4]
Montoya G [4]
Myong S [4]
Paul T [4]
Ritchey S [4]
Roganowicz K [4]
Savino C [4]
Scipioni A [4]
Shen R [4]
Swuec P [4]

Author by ORCID

Brunger AT [20]
White KI [20]
Balaji A [20]
Couoh-cardel S [20]
Khan YA [20]
Diao J [20]
Chapman MS [11]
Stagg SM [11]
Cheng Y [8]
Jia N [8]
Cormier A [8]
Seed RI [8]
Timcenko M [8]
Nureki O [8]
Campbell MG [8]
Nishimura SL [8]
Li H [7]
Boesen T [7]
Xiao X [7]
Lenoir G [7]
Nissen P [7]
Koide S [6]
Zhao M [6]
Maso L [6]
Hattori T [6]
Neel BG [6]
Rajak E [6]
Xie Y [5]
Huang H [5]
Akashi T [5]
Hiraizumi M [5]
Wang L [5]
Zhu B [5]
Miyaguchi I [5]
Xiao J [5]
Cheng R [5]
Li J [5]
Erramilli S [4]
Barile A [4]
Savino C [4]
Harmer NJ [4]
Montemiglio LC [4]
Darwin KH [4]
Contestabile R [4]
Tramonti A [4]
Lahiri I [4]
Montoya G [4]
Bolognesi M [4]
Lyons JA [4]
Kossiakoff AA [4]
Chaves-sanjuan A [4]
Roganowicz K [4]
Ritchey S [4]
Fay A [3]
Sun Y [3]
Dieudonne T [3]
Glickman MS [3]
Xia S [3]
Borgnia MJ [3]
Matthies D [3]
Pape T [3]
Zatopek KM [3]
Ouyang S [3]
Sauguet L [3]
Kovach A [3]
Kuhlbrandt W [3]
Karlsen JL [3]
Bang I [3]
Delarue M [3]
Moeller A [3]
Wang L [3]
Subramaniam S [3]
Wang Z [3]
Kato Y [2]
Lin J [2]
Ke A [2]
Pata JD [2]
Chang J [2]
Stopfer LE [2]
Yuan K [2]
Tajiri M [2]
Liu X [2]
Zhou X [2]
Liu X [2]
Tang X [2]
Meng Y [2]
Chai J [2]
Robinson CV [2]
Kumari A [2]
Nogi T [2]
Fuglsang A [2]
Toenjes ST [2]
Hirose M [2]
Oyejobi GK [2]
Yu D [2]
Garcia KC [2]
Wu D [2]
Rader C [2]
Tong L [2]
Miyake T [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links