Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [861]
Saccharomyces cerevisiae [447]
Escherichia coli [420]
Mus musculus [232]
Synthetic construct [140]
Bos taurus [122]
Oryctolagus cuniculus [106]
Human immunodeficiency virus 1 [103]
Rattus norvegicus [98]
Chlamydomonas reinhardtii [85]
Sus scrofa [44]
Thermus thermophilus [38]
Bacillus subtilis [36]
Escherichia coli [36]
Gallus gallus [34]
Drosophila melanogaster [32]
Enterobacteria phage t4 [31]
Escherichia virus t7 [31]
Human immunodeficiency virus [31]
Hepatitis b virus [29]
Salmonella phage p22 [28]
Thermoplasma acidophilum [27]
Enterovirus c [26]
Escherichia coli [26]
Salmonella enterica [25]
Plasmodium falciparum [24]
Human herpesvirus 1 [23]
Methanococcus maripaludis [23]
Tetrahymena thermophila [23]
Xenopus laevis [22]
Influenza a virus [20]
Myxococcus xanthus [20]
Parengyodontium album [20]
Cypovirus 1 [19]
Borrelia burgdorferi [19]
Rice dwarf virus [18]
Tobacco mosaic virus [18]
Canis lupus [18]
Bacillus phage phi29 [17]
Saccharolobus solfataricus [17]
Human mastadenovirus c [17]
Bacillus phage spp1 [16]
Schizosaccharomyces pombe [16]
Pseudomonas phage phi6 [15]
Hepacivirus c [15]
Cricetulus griseus [14]
Human mastadenovirus d [14]
Escherichia phage ms2 [14]
Nudaurelia capensis omega virus [14]
Ebola virus sp. [14]
Enterovirus a [14]
Simian-human immunodeficiency virus [14]
Taura syndrome virus [13]
Methanocaldococcus jannaschii [13]
Chikungunya virus [13]
Sus scrofa [13]
Streptococcus pneumoniae [12]
Dictyostelium discoideum [12]
Shigella flexneri [12]
Simian virus 40 [11]
Pyrococcus furiosus [11]
Alphapapillomavirus 9 [11]
Streptomyces venezuelae [11]
Danio rerio [11]
Murine leukemia virus [10]
Enterovirus c [10]
Staphylococcus aureus [10]
Triticum aestivum [10]
Neurospora crassa [10]
Pseudomonas virus prd1 [9]
Unidentified influenza virus [9]
Simian immunodeficiency virus [9]
Campylobacter jejuni [9]
Kluyveromyces lactis [9]
Thermus thermophilus [9]
Caenorhabditis elegans [9]
Torpedo marmorata [9]
Suid alphaherpesvirus 1 [8]
Rotavirus a [8]
Rotavirus a [8]
Dengue virus [8]
Rabbit hemorrhagic disease virus [8]
Mycobacterium tuberculosis [8]
Human herpesvirus 8 [8]
Thermomyces lanuginosus [8]
Trypanosoma brucei [8]
Camelus dromedarius [8]
Carnivore protoparvovirus 1 [7]
Enterobacteria phage m13 [7]
Avian infectious bursal disease virus [7]
Feline calicivirus [7]
Cricket paralysis virus [7]
Dengue virus [7]
Acidianus tengchongensis [7]
Streptomyces avidinii [7]
Pseudomonas aeruginosa [7]
Photorhabdus luminescens [7]
Lactococcus phage tp901-1 [7]
Spinacia oleracea [7]
Synechococcus virus syn5 [7]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Carragher B [222]
Potter CS [219]
Chiu W [204]
Ward AB [175]
Nogales E [107]
Rossmann MG [103]
Frank J [102]
Zhang X [102]
Saibil HR [98]
Beckmann R [92]
Wilson IA [91]
Liu J [87]
Subramaniam S [86]
Zhou ZH [84]
Cheng Y [83]
Liu X [79]
Grigorieff N [77]
Stark H [75]
Mielke T [74]
Schmid MF [73]
Bartesaghi A [71]
Zhang Z [69]
Moeller A [67]
Orlova EV [67]
Jakana J [65]
Campbell MG [64]
Lyumkis D [64]
Jensen GJ [63]
Drabbels M [62]
Lorenz UJ [62]
Ludtke SJ [62]
Berninghausen O [61]
Butcher SJ [61]
Wang HW [60]
Oda T [59]
Kikkawa M [58]
Moore JP [58]
Burton DR [57]
Sanders RW [57]
Zhang K [57]
Marletta MA [56]
Cheng A [54]
Jiang W [54]
Johnson JE [54]
Veesler D [54]
Lander GC [53]
Sewall LM [53]
Caston JR [52]
Chipman PR [52]
Scheres SHW [52]
Steven AC [52]
Wang L [51]
Clare DK [50]
Yanagisawa H [50]
Zhang Y [50]
Conway JF [48]
Carrascosa JL [47]
Cottrell CA [47]
Huiskonen JT [47]
Zhang Q [47]
Gao N [46]
Lee JH [46]
Grant T [45]
Harder OF [45]
Hruby J [45]
Borgnia MJ [44]
Chen S [44]
Cheng N [44]
Becker T [43]
Kim LY [43]
Kwong PD [43]
Llorca O [43]
Des Georges A [43]
Baker TS [42]
Bangaru S [42]
Barrass SV [42]
Hafenstein S [42]
Li X [42]
Liao M [42]
Williamson JR [42]
De Val N [42]
Baumeister W [41]
Bowman VD [41]
Luque D [41]
Torrents De La Pena A [41]
Bhabha G [40]
Gilbert RJC [40]
Gonen T [40]
Mowry NJ [40]
Shi Y [40]
Stuart DI [40]
Yu X [40]
Taylor KA [39]
Zhang L [39]
Bamford DH [38]
Dandey VP [38]
Eng ET [38]
Lei J [38]
Noble AJ [38]
Shapiro L [38]

Author by ORCID

Chiu W [153]
Carragher B [99]
Subramaniam S [79]
Schmid MF [68]
Grigorieff N [67]
Moeller A [67]
Orlova EV [67]
Campbell MG [64]
Ludtke SJ [62]
Kikkawa M [58]
Butcher SJ [57]
Oda T [57]
Ward AB [53]
Jiang W [53]
Chipman PR [51]
Yanagisawa H [50]
Cheng Y [47]
Huiskonen JT [47]
Conway JF [46]
Gao N [46]
Borgnia MJ [44]
Caston JR [44]
Lander GC [43]
Llorca O [42]
Luque D [41]
Clare DK [41]
Lee JH [40]
Torrents De La Pena A [39]
Baker TS [39]
Moores CA [37]
De Paiva Froes Rocha R [36]
Williamson JR [36]
Valle M [35]
Julien JP [34]
Schoehn G [34]
Grant T [34]
Topf M [34]
Shi Y [34]
Sobolevsky AI [32]
Smith BC [32]
Scheres SH [32]
Stuart DI [32]
Neuberger A [32]
Bui KH [32]
Kostyuchenko VA [31]
Bamford DH [31]
Nadezhdin KD [31]
Filman DJ [31]
Egelman EH [31]
Barford D [29]
Stahlberg H [29]
Wilson DN [29]
Yan C [28]
Loerke J [28]
Bai XC [28]
Ramakrishnan V [28]
Boehringer D [28]
Bottcher B [28]
Toropova K [28]
Sachse C [27]
Skiniotis G [27]
Laurinmaki P [26]
Alushin GM [26]
Kong L [26]
Ranson NA [26]
Hogle JM [26]
Foerster F [26]
Taylor DW [26]
Rodnina MV [26]
Valpuesta JM [25]
Drabbels M [25]
Armache JP [25]
Scheres SHW [25]
Grob P [25]
Lorenz UJ [25]
Briegel A [25]
Raunser S [24]
Rice WJ [24]
Wendler P [24]
Hattne J [24]
Underbakke ES [24]
Robinson CV [23]
Baker D [23]
Brown A [23]
Heymann JB [23]
Morris EP [23]
Hoenger A [22]
Bengtson MH [22]
Martin-benito J [22]
Doamekpor SK [22]
Lima CD [22]
Xiang Y [22]
Joazeiro CA [22]
Frydman J [22]
Kwong PD [22]
Behrmann E [21]
Barrass SV [21]
Herzog F [21]
Zhang X [21]
Crowe JE [21]

Journal

PNAS [543]
NATURE [375]
STRUCTURE [325]
SCIENCE [284]
J VIROL [249]
CELL [248]
NAT COMMUN [224]
ELIFE [223]
NAT STRUCT MOL BIOL [223]
J MOL BIOL [217]
J STRUCT BIOL [145]
EMBO J [133]
MOL CELL [129]
J BIOL CHEM [102]
PLOS PATHOG [101]
TO BE PUBLISHED [99]
J CELL BIOL [62]
CELL REP [58]
BIORXIV [54]
NUCLEIC ACIDS RES [52]
CELL REP METHODS [36]
PLOS ONE [36]
SCI REP [34]
NAT METHODS [33]
PLOS BIOL [32]
VIROLOGY [32]
SCI ADV [30]
CELL RES [27]
MOL BIOL CELL [24]
ACTA CRYSTALLOGR D STRUCT BIOL [22]
MOL MICROBIOL [20]
MOL PHARMACOL [16]
PROTEIN CELL [16]
EMBO REP [15]
OPEN BIOL [15]
GENES DEV [14]
J AM CHEM SOC [14]
J BACTERIOL [13]
IMMUNITY [11]
NAT CELL BIOL [11]
COMMUN BIOL [10]
MBIO [10]
NAT PROTOC [10]
RNA [10]
J CELL SCI [9]
J GEN VIROL [9]
DEV CELL [8]
FEBS LETT [8]
NANOSCALE [8]
PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
BIOCHEM J [7]
BIOCHIM BIOPHYS ACTA [7]
CURR BIOL [7]
ACS NANO [6]
BIOCHEMISTRY [6]
BLOOD [6]
MICROSCOPY [6]
RES SQ [6]
BIOPHYS J [5]
CELL CYCLE [5]
PROTEIN SCI [5]
FRONT MOL BIOSCI [4]
HUM VACCIN IMMUNOTHER [4]
J IMMUNOL [4]
METHODS [4]
NAT NANOTECHNOL [4]
PROG BIOPHYS MOL BIOL [4]
STRUCT. [4]
ACTA BIOCHIM.BIOPHYS.SIN. [3]
BIOCHEM BIOPHYS RES COMMUN [3]
CELL MICROBIOL [3]
FEBS J [3]
IUCRJ [3]
J VIS EXP [3]
PHYS BIOL [3]
STRUCTURE (LONDON, ENGLAND : 1993) [3]
ULTRAMICROSCOPY [3]
ACS CHEM BIOL [2]
ANGEW CHEM INT ED ENGL [2]
ARCH BIOCHEM BIOPHYS [2]
BIOPOLYMERS [2]
CYTOSKELETON [2]
ISCIENCE [2]
J STRUCT BIOL X [2]
MOL BIOL EVOL [2]
MOL CELLS [2]
MOLECULAR BIOLOGY AND EVOLUTION [2]
NAT CHEM BIOL [2]
NAT IMMUNOL [2]
NAT MED [2]
RNA BIOL [2]
TRAFFIC [2]
TRANSCRIPTION [2]
AIDS RES HUM RETROVIRUSES [1]
CELL MOL IMMUNOL [1]
COMMUN CHEM [1]
COMMUNICATIONS CHEMISTRY [1]
CURR OPIN STRUCT BIOL [1]
CYSTAL RESEARCH AND TECHNOLOGY [1]
EMBO MOL MED [1]

Software

CHIMERA [492]
RELION [444]
SPIDER [427]
EMAN [184]
IMOD [143]
CRYOSPARC [108]
IMAGIC [108]
EMAN2 [102]
FREALIGN [92]
XMIPP [88]
AUTO3DEM [77]
EMAN2, SPARX [61]
SITUS [55]
MDFF [47]
MRC [46]
IMAGIC, SPIDER [42]
URO [40]
SPIDER, APPION [39]
UCSF CHIMERA [39]
SPIDER, FREALIGN [37]
IMOD, PEET [35]
EMFIT [33]
SPARX [33]
APPION, SPIDER [32]
PROTOMO [32]
CTFFIND3, RELION [31]
EM3DR2 [28]
CHIMERA, SITUS [26]
EMAN1 [24]
O [23]
EMAN2, RELION [22]
IMIRS [22]
AIMLESS [21]
IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
PHENIX [20]
CHIMERA, MDFF [19]
TOMO3D [19]
EMAN1, EMAN2 [18]
IMOD, TOMO3D, PEET [18]
SPIDER, RELION [18]
APPION, SPIDER, SPARX, EMAN2 [17]
BSOFT [17]
CHIMERA, COOT [17]
IHRSR [17]
SPIDER, IMAGIC [17]
SPRING [17]
IMAGIC, CUSTOM, SPIDER [16]
IMOD, TOMO3D [16]
MULTI-PATH SA [16]
UNBLUR, CTFFIND4, FREALIGN [16]
APPION, SPIDER, EMAN [15]
COMET [15]
COOT [15]
EMAN, SPIDER [15]
IMAGIC-5 [15]
IMOD, DYNAMO [15]
RELION, CTFFIND3 [15]
SPIDER, EMAN [15]
CHIMERA, FLEX-EM [14]
IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
MPSA [14]
SPIDER, IHRSR [14]
CTFFIND [13]
DIREX [13]
IMAGIC-5, SPIDER [13]
IMOD, RAPTOR, PROTOMO [13]
PEET, RUBY-HELIX [13]
PHOELIX, SUPRIM [13]
PHOELIX [12]
EMAN2, SPIDER, XMIPP [11]
GAP [11]
IMOD, PROTOMO [11]
JSPR, EMAN2, EMAN [11]
SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
SPIDER PACKAGE [11]
SPIDER XMIPP [11]
TOM [11]
EMAN, XMIPP [10]
EMAN2, RELION, 1.3 [10]
FLEX-EM [10]
IMOD, BSOFT [10]
SPARX/EMAN2 [10]
SPIDER, EMAN2 [10]
SPIDER, SPARX [10]
EMAN, FREALIGN [9]
EMAN1, FREALIGN [9]
EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
EMAN2/SPARX [9]
MPSA, EMAN, EMAN2 [9]
MRC, IMAGIC, SPIDER [9]
PFT2, EM3DR2 [9]
TOM, AV3 [9]
TOM, TOOLBOX, BSOFT, XMIPP [9]
VEDA [9]
XMIPP, SPIDER [9]
EMAN, EMAN2, MPSA [8]
EMAN2, FREALIGN [8]
EMPFT EM3DR [8]
ETOMO [8]
IMAGIC, FREALIGN [8]

Microscope

FEI TECNAI F20 [951]
FEI TITAN KRIOS [896]
FEI POLARA 300 [498]
FEI/PHILIPS CM200FEG [244]
FEI TECNAI 12 [160]
FEI TECNAI F30 [158]
FEI TECNAI 20 [152]
FEI TECNAI SPIRIT [150]
JEOL 2010F [109]
FEI/PHILIPS CM300FEG/T [102]
JEOL 2200FS [102]
TFS KRIOS [93]
JEOL 3200FSC [83]
OTHER [42]
JEOL 2100 [38]
JEOL 3100FFC [37]
FEI/PHILIPS CM120T [35]
JEOL 1230 [34]
FEI TALOS ARCTICA [32]
FEI TITAN [32]
JEOL 2100F [31]
FEI/PHILIPS CM200FEG/ST [26]
FEI/PHILIPS CM200T [26]
ZEISS LIBRA120PLUS [26]
JEOL 4000EX [24]
JEOL 1200EXII [21]
JEOL 3200FS [21]
JEOL KYOTO-3000SFF [21]
JEOL 3000SFF [20]
JEOL 4000 [17]
JEOL 1200EX [12]
JEOL 2200FSC [11]
FEI/PHILIPS CM200FEG/UT [10]
JEOL 1400 [8]
TFS GLACIOS [7]
FEI TECNAI 10 [6]
FEI/PHILIPS CM300FEG/ST [6]
JEOL 2000EX [6]
JEOL 100CX [5]
JEOL 2010 [5]
FEI/PHILIPS CM12 [4]
FEI/PHILIPS CM300FEG/HE [4]
FEI/PHILIPS EM420 [4]
FEI TECNAI SPHERA [3]
JEOL 1010 [3]
FEI TECNAI ARCTICA [2]
FEI/PHILIPS EM400 [2]
HITACHI H-9500SD [2]
JEOL 1200 [2]
JEOL 2010HC [2]
JEOL 2010HT [2]
JEOL 2010UHR [2]
FEI/PHILIPS CM200FEG/SOPHIE [1]
HITACHI EF2000 [1]
HITACHI H7600 [1]
JEOL 2000EXII [1]
JEOL 2011 [1]
JEOL CRYO ARM 300 [1]
TFS TALOS [1]
TFS TITAN THEMIS [1]
ZEISS LEO912 [1]

Electron Source

Film or detector model

KODAK SO-163 FILM [1047]
GATAN ULTRASCAN 4000 4K X 4K [558]
TVIPS TEMCAM-F416 4K X 4K [347]
GATAN K2 SUMMIT 4K X 4K [250]
FEI FALCON II 4K X 4K [246]
GATAN K2 4K X 4K [230]
FEI EAGLE 4K X 4K [146]
TVIPS TEMCAM-F415 4K X 4K [144]
GENERIC CCD [113]
GENERIC GATAN 4K X 4K [111]
GATAN K3 6K X 4K [95]
GENERIC TVIPS 4K X 4K [77]
GATAN ULTRASCAN 1000 2K X 2K [66]
FEI FALCON IV 4K X 4K [57]
GENERIC GATAN [53]
GATAN K3 BIOQUANTUM 6K X 4K [52]
TVIPS TEMCAM-F816 8K X 8K [44]
GATAN K2 QUANTUM 4K X 4K [42]
GATAN MULTISCAN [41]
FEI FALCON I 4K X 4K [40]
OTHER [32]
TVIPS TEMCAM-F224 2K X 2K [25]
FEI CETA 4K X 4K [23]
DIRECT ELECTRON DE-12 4K X 3K [21]
FEI FALCON III 4K X 4K [20]
FEI EAGLE 2K X 2K [18]
GENERIC GATAN 2K X 2K [17]
TFS FALCON 4I 4K X 4K [17]
DIRECT ELECTRON DE-20 5K X 3K [11]
GENERIC CCD 2K X 2K [11]
GENERIC FILM [11]
GENERIC TVIPS [11]
KODAK 4489 FILM [11]
AGFA SCIENTA FILM [6]
GATAN ULTRASCAN 10000 10K X 10K [5]
GATAN ORIUS SC200 2K X 2K [4]
DIRECT ELECTRON DE-10 5K X 4K [3]
GENERIC IMAGE PLATES [3]
GENERIC TVIPS 2K X 2K [3]
SIA 15C 3K X 3K [2]
DIRECT ELECTRON DE-16 4K X 4K [1]
PROSCAN TEM-PIV 2K X 2K [1]

EMPIAR Experiment type

EMPIAR Image category

External links

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EMPIAR [201]

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EMPIAR-13279

Release date: Feb. 26, 2026
Dataset size: 1.5 TB
Experiment type: EMDB

Tang D, Liu T, Chen Y, Zhu Z, Chen H, Chen Q, Yu Y

Mol Cell (2025) 85 pp. 1176-1188.e5 [ DOI: 10.1016/j.molcel.2024.12.010 Pubmed: 40010342 ]

Image sets:

Raw K2 dose-fractionated movies of HerA and DUF4297-HerA-ATP samples

EMD-49298

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3D View

Cryo-ET of FIB-milled synapse region between CD19 NALM6 leukemia cells and T-cells expressing 8H47 CD19 CAR construct sample 2

Release date: Feb. 25, 2026
Resolution: 6.69 Å
EM Method: Tomography

Mirazee J, Aranganathan A, Chen X, Tiwary P, Ding J, Mizuno N, Walters KJ, Taylor N, Gregoire AB

To Be Published

EMD-49381

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3D View

Cryo-ET of FIB-milled synapse region between CD19 NALM6 leukemia cells and T-cells expressing 8H8 CD19 CAR construct sample2, region1

Release date: Feb. 25, 2026
Resolution: 4.61 Å
EM Method: Tomography

Mirazee J, Aranganathan A, Chen X, Tiwary P, Ding J, Mizuno N, Walters KJ, Taylor N, Gregoire AB

To Be Published

EMD-52634

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3D View

Single particle cryo electron microscopy of a Fab fragment bound to recombinant human CD40 ligand

Release date: Feb. 25, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9i5n

Pedersen K, Laursen NS, Green K, Hansen AG, Palarasah Y, Rovsing AB, Kristoffersen EL, Schinkel T, Andersen ES, Valero J, Civit L, Troldborg A, Degn SE, Thiel S

Eur.J.Immunol. (2026) [ DOI: doi:10.1002/eji.70158 ]

EMPIAR-12576

Related EMDB

ESIBD structure of GroEL

Release date: Feb. 23, 2026
Dataset size: 676.0 GB
Experiment type: EMDB

Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

To Be Published

Image sets:

Unaligned multi-frame micrographs of ESIBD GroEL

EMD-52626

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3D View

Raw data

ESIBD structure of GroEL

Release date: Feb. 18, 2026
Resolution: 4.8 Å
EM Method: Single-particle

Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

To Be Published

EMD-53311

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3D View

Cryo-EM map of SKM-70S ribosomal stalled complex in the major state vacant A-site, canon

Release date: Feb. 18, 2026
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 9qqq

Wright G, Cook M, Xu M, Morici M, Travin D, Wang W, Klepacki D, Chhabra N, Rao V, Sahile H, Hackenberger D, Safdari H, Berger M, Corazza M, Bond A, Guitor A, Tertigas D, Wang L, Schaenzer A, Ejim L, Yarlagadda V, Gomez J, Surette M, Av-Gay Y, Dhar N, Hung D, Vazquez-Laslop N, Mankin A, Wilson D