Electron Microscopy Data Bank

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Current Database

Current status

Sample type

Organism

Homo sapiens [885]
Saccharomyces cerevisiae [448]
Escherichia coli [421]
Mus musculus [232]
Synthetic construct [140]
Bos taurus [122]
Oryctolagus cuniculus [106]
Human immunodeficiency virus 1 [103]
Rattus norvegicus [98]
Chlamydomonas reinhardtii [85]
Sus scrofa [44]
Thermus thermophilus [38]
Bacillus subtilis [36]
Escherichia coli [36]
Gallus gallus [34]
Drosophila melanogaster [32]
Enterobacteria phage t4 [31]
Escherichia virus t7 [31]
Human immunodeficiency virus [31]
Hepatitis b virus [29]
Salmonella phage p22 [28]
Thermoplasma acidophilum [27]
Enterovirus c [26]
Escherichia coli [26]
Salmonella enterica [26]
Plasmodium falciparum [24]
Xenopus laevis [24]
Human herpesvirus 1 [23]
Methanococcus maripaludis [23]
Tetrahymena thermophila [23]
Influenza a virus [20]
Myxococcus xanthus [20]
Parengyodontium album [20]
Cypovirus 1 [19]
Borrelia burgdorferi [19]
Rice dwarf virus [18]
Tobacco mosaic virus [18]
Canis lupus [18]
Bacillus phage phi29 [17]
Saccharolobus solfataricus [17]
Human mastadenovirus c [17]
Bacillus phage spp1 [16]
Schizosaccharomyces pombe [16]
Pseudomonas phage phi6 [15]
Hepacivirus c [15]
Cricetulus griseus [14]
Human mastadenovirus d [14]
Escherichia phage ms2 [14]
Nudaurelia capensis omega virus [14]
Ebola virus sp. [14]
Enterovirus a [14]
Simian-human immunodeficiency virus [14]
Taura syndrome virus [13]
Methanocaldococcus jannaschii [13]
Chikungunya virus [13]
Sus scrofa [13]
Streptococcus pneumoniae [12]
Dictyostelium discoideum [12]
Shigella flexneri [12]
Simian virus 40 [11]
Pyrococcus furiosus [11]
Alphapapillomavirus 9 [11]
Streptomyces venezuelae [11]
Danio rerio [11]
Murine leukemia virus [10]
Enterovirus c [10]
Staphylococcus aureus [10]
Triticum aestivum [10]
Neurospora crassa [10]
Pseudomonas virus prd1 [9]
Unidentified influenza virus [9]
Simian immunodeficiency virus [9]
Campylobacter jejuni [9]
Kluyveromyces lactis [9]
Thermus thermophilus [9]
Caenorhabditis elegans [9]
Torpedo marmorata [9]
Equus caballus [9]
Suid alphaherpesvirus 1 [8]
Rotavirus a [8]
Rotavirus a [8]
Dengue virus [8]
Rabbit hemorrhagic disease virus [8]
Mycobacterium tuberculosis [8]
Human herpesvirus 8 [8]
Thermomyces lanuginosus [8]
Trypanosoma brucei [8]
Camelus dromedarius [8]
Carnivore protoparvovirus 1 [7]
Enterobacteria phage m13 [7]
Avian infectious bursal disease virus [7]
Feline calicivirus [7]
Cricket paralysis virus [7]
Dengue virus [7]
Acidianus tengchongensis [7]
Streptomyces avidinii [7]
Severe acute respiratory syndrome coronavirus [7]
Pseudomonas aeruginosa [7]
Photorhabdus luminescens [7]
Lactococcus phage tp901-1 [7]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Carragher B [222]
Potter CS [219]
Chiu W [206]
Ward AB [175]
Nogales E [107]
Rossmann MG [103]
Zhang X [103]
Frank J [102]
Saibil HR [98]
Beckmann R [92]
Wilson IA [91]
Liu J [87]
Subramaniam S [86]
Zhou ZH [84]
Cheng Y [83]
Liu X [79]
Grigorieff N [77]
Stark H [75]
Mielke T [74]
Schmid MF [73]
Bartesaghi A [71]
Drabbels M [70]
Lorenz UJ [70]
Zhang Z [69]
Moeller A [67]
Orlova EV [67]
Jakana J [65]
Campbell MG [64]
Lyumkis D [64]
Jensen GJ [63]
Ludtke SJ [62]
Berninghausen O [61]
Butcher SJ [61]
Kikkawa M [61]
Wang HW [60]
Oda T [59]
Zhang K [59]
Moore JP [58]
Burton DR [57]
Sanders RW [57]
Marletta MA [56]
Cheng A [54]
Jiang W [54]
Johnson JE [54]
Veesler D [54]
Lander GC [53]
Sewall LM [53]
Yanagisawa H [53]
Caston JR [52]
Chipman PR [52]
Scheres SHW [52]
Steven AC [52]
Wang L [51]
Clare DK [50]
Hruby J [50]
Zhang Y [50]
Conway JF [48]
Carrascosa JL [47]
Cottrell CA [47]
Huiskonen JT [47]
Zhang Q [47]
Gao N [46]
Lee JH [46]
Grant T [45]
Harder OF [45]
Borgnia MJ [44]
Chen S [44]
Cheng N [44]
Barrass SV [43]
Becker T [43]
Kim LY [43]
Kwong PD [43]
Llorca O [43]
Des Georges A [43]
Baker TS [42]
Bangaru S [42]
Hafenstein S [42]
Li X [42]
Liao M [42]
Williamson JR [42]
De Val N [42]
Baumeister W [41]
Bowman VD [41]
Luque D [41]
Mowry NJ [41]
Torrents De La Pena A [41]
Bhabha G [40]
Gilbert RJC [40]
Gonen T [40]
Shi Y [40]
Stuart DI [40]
Yu X [40]
Taylor KA [39]
Zhang L [39]
Bamford DH [38]
Dandey VP [38]
Eng ET [38]
Lei J [38]
Noble AJ [38]
Shapiro L [38]

Author by ORCID

Chiu W [153]
Carragher B [99]
Subramaniam S [79]
Schmid MF [68]
Grigorieff N [67]
Moeller A [67]
Orlova EV [67]
Campbell MG [64]
Ludtke SJ [62]
Kikkawa M [58]
Butcher SJ [57]
Oda T [57]
Ward AB [53]
Jiang W [53]
Chipman PR [51]
Yanagisawa H [50]
Cheng Y [47]
Huiskonen JT [47]
Cottrell CA [47]
Conway JF [46]
Gao N [46]
Borgnia MJ [44]
Caston JR [44]
Lander GC [43]
Llorca O [42]
Luque D [41]
Clare DK [41]
Lee JH [40]
Torrents De La Pena A [39]
Baker TS [39]
Moores CA [37]
Khayat R [37]
De Paiva Froes Rocha R [36]
Williamson JR [36]
Valle M [35]
Grant T [35]
Julien JP [34]
Schoehn G [34]
Topf M [34]
Shi Y [34]
Smith BC [32]
Scheres SH [32]
Stuart DI [32]
Bui KH [32]
Sobolevsky AI [31]
Kostyuchenko VA [31]
Bamford DH [31]
Neuberger A [31]
Filman DJ [31]
Egelman EH [31]
Nadezhdin KD [30]
Barford D [29]
Stahlberg H [29]
Wilson DN [29]
Drabbels M [28]
Yan C [28]
Loerke J [28]
Bai XC [28]
Ramakrishnan V [28]
Boehringer D [28]
Bottcher B [28]
Toropova K [28]
Lorenz UJ [28]
Doudna JA [27]
Sachse C [27]
Skiniotis G [27]
Laurinmaki P [26]
Alushin GM [26]
Kong L [26]
Ranson NA [26]
Hogle JM [26]
Foerster F [26]
Taylor DW [26]
Rodnina MV [26]
Valpuesta JM [25]
Armache JP [25]
Scheres SHW [25]
Grob P [25]
Briegel A [25]
Raunser S [24]
Rice WJ [24]
Wendler P [24]
Hattne J [24]
Des Georges A [24]
Underbakke ES [24]
Robinson CV [23]
Baker D [23]
Brown A [23]
Heymann JB [23]
Morris EP [23]
Barrass SV [22]
Hoenger A [22]
Hruby J [22]
Bengtson MH [22]
Martin-benito J [22]
Doamekpor SK [22]
Lima CD [22]
Xiang Y [22]
Joazeiro CA [22]
Frydman J [22]

Journal

PNAS [544]
NATURE [376]
STRUCTURE [326]
SCIENCE [284]
CELL [249]
J VIROL [249]
NAT COMMUN [229]
ELIFE [226]
NAT STRUCT MOL BIOL [224]
J MOL BIOL [217]
J STRUCT BIOL [145]
EMBO J [133]
MOL CELL [129]
TO BE PUBLISHED [111]
J BIOL CHEM [102]
PLOS PATHOG [101]
BIORXIV [72]
J CELL BIOL [62]
CELL REP [58]
NUCLEIC ACIDS RES [54]
NAT METHODS [39]
CELL REP METHODS [36]
PLOS ONE [36]
SCI REP [34]
PLOS BIOL [32]
VIROLOGY [32]
SCI ADV [30]
CELL RES [27]
ACTA CRYSTALLOGR D STRUCT BIOL [26]
MOL BIOL CELL [24]
MOL MICROBIOL [20]
MOL PHARMACOL [16]
PROTEIN CELL [16]
EMBO REP [15]
OPEN BIOL [15]
GENES DEV [14]
J AM CHEM SOC [14]
J BACTERIOL [13]
COMMUN BIOL [11]
IMMUNITY [11]
NAT CELL BIOL [11]
MBIO [10]
NAT PROTOC [10]
RNA [10]
J CELL SCI [9]
J GEN VIROL [9]
DEV CELL [8]
FEBS LETT [8]
NANOSCALE [8]
PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
BIOCHEM J [7]
BIOCHIM BIOPHYS ACTA [7]
CURR BIOL [7]
ACS NANO [6]
BIOCHEMISTRY [6]
BIOPHYS J [6]
BLOOD [6]
MICROSCOPY [6]
RES SQ [6]
CELL CYCLE [5]
PROTEIN SCI [5]
FRONT MOL BIOSCI [4]
HUM VACCIN IMMUNOTHER [4]
J IMMUNOL [4]
METHODS [4]
NAT NANOTECHNOL [4]
PROG BIOPHYS MOL BIOL [4]
STRUCT. [4]
ACTA BIOCHIM.BIOPHYS.SIN. [3]
BIOCHEM BIOPHYS RES COMMUN [3]
CELL MICROBIOL [3]
FEBS J [3]
FRONT AGRON [3]
IUCRJ [3]
J VIS EXP [3]
PHYS BIOL [3]
STRUCTURE (LONDON, ENGLAND : 1993) [3]
ULTRAMICROSCOPY [3]
ACS CHEM BIOL [2]
AIMS BIOPHYS [2]
ANGEW CHEM INT ED ENGL [2]
ARCH BIOCHEM BIOPHYS [2]
BIOPOLYMERS [2]
CYTOSKELETON [2]
ISCIENCE [2]
J STRUCT BIOL X [2]
MOL BIOL EVOL [2]
MOL CELLS [2]
MOLECULAR BIOLOGY AND EVOLUTION [2]
NAT CHEM BIOL [2]
NAT IMMUNOL [2]
NAT MED [2]
RNA BIOL [2]
TRAFFIC [2]
TRANSCRIPTION [2]
AIDS RES HUM RETROVIRUSES [1]
AIMS BIOPHYSICS [1]
CELL MOL IMMUNOL [1]
COMMUN CHEM [1]
COMMUNICATIONS CHEMISTRY [1]

Software

CHIMERA [492]
RELION [455]
SPIDER [427]
EMAN [184]
IMOD [150]
CRYOSPARC [131]
IMAGIC [108]
EMAN2 [102]
FREALIGN [92]
XMIPP [88]
AUTO3DEM [77]
EMAN2, SPARX [61]
SITUS [55]
MDFF [47]
MRC [46]
IMAGIC, SPIDER [42]
URO [40]
SPIDER, APPION [39]
UCSF CHIMERA [39]
SPIDER, FREALIGN [37]
IMOD, PEET [35]
EMFIT [33]
SPARX [33]
APPION, SPIDER [32]
PROTOMO [32]
CTFFIND3, RELION [31]
EM3DR2 [28]
CHIMERA, SITUS [26]
EMAN1 [24]
CTFFIND [23]
O [23]
EMAN2, RELION [22]
IMIRS [22]
AIMLESS [21]
IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
PHENIX [20]
CHIMERA, MDFF [19]
TOMO3D [19]
EMAN1, EMAN2 [18]
IMOD, TOMO3D, PEET [18]
SPIDER, RELION [18]
APPION, SPIDER, SPARX, EMAN2 [17]
BSOFT [17]
CHIMERA, COOT [17]
IHRSR [17]
SPIDER, IMAGIC [17]
SPRING [17]
IMAGIC, CUSTOM, SPIDER [16]
IMOD, TOMO3D [16]
MULTI-PATH SA [16]
UNBLUR, CTFFIND4, FREALIGN [16]
APPION, SPIDER, EMAN [15]
COMET [15]
COOT [15]
EMAN, SPIDER [15]
IMAGIC-5 [15]
IMOD, DYNAMO [15]
RELION, CTFFIND3 [15]
SPIDER, EMAN [15]
CHIMERA, FLEX-EM [14]
IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
MPSA [14]
SPIDER, IHRSR [14]
DIREX [13]
IMAGIC-5, SPIDER [13]
IMOD, RAPTOR, PROTOMO [13]
PEET, RUBY-HELIX [13]
PHOELIX, SUPRIM [13]
PHOELIX [12]
EMAN2, SPIDER, XMIPP [11]
ETOMO [11]
GAP [11]
IMOD, PROTOMO [11]
JSPR, EMAN2, EMAN [11]
SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
SPIDER PACKAGE [11]
SPIDER XMIPP [11]
TOM [11]
EMAN, XMIPP [10]
EMAN2, RELION, 1.3 [10]
FLEX-EM [10]
IMOD, BSOFT [10]
SPARX/EMAN2 [10]
SPIDER, EMAN2 [10]
SPIDER, SPARX [10]
EMAN, FREALIGN [9]
EMAN1, FREALIGN [9]
EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
EMAN2/SPARX [9]
MPSA, EMAN, EMAN2 [9]
MRC, IMAGIC, SPIDER [9]
PFT2, EM3DR2 [9]
TOM, AV3 [9]
TOM, TOOLBOX, BSOFT, XMIPP [9]
VEDA [9]
XMIPP, SPIDER [9]
EMAN, EMAN2, MPSA [8]
EMAN2, FREALIGN [8]
EMPFT EM3DR [8]
IMAGIC, FREALIGN [8]

Microscope

FEI TECNAI F20 [951]
FEI TITAN KRIOS [896]
FEI POLARA 300 [498]
FEI/PHILIPS CM200FEG [244]
FEI TECNAI 12 [160]
FEI TECNAI F30 [158]
FEI TECNAI 20 [152]
FEI TECNAI SPIRIT [150]
TFS KRIOS [130]
JEOL 2010F [109]
FEI/PHILIPS CM300FEG/T [102]
JEOL 2200FS [102]
JEOL 3200FSC [83]
OTHER [42]
JEOL 2100 [38]
JEOL 3100FFC [37]
FEI/PHILIPS CM120T [35]
JEOL 1230 [34]
FEI TALOS ARCTICA [33]
FEI TITAN [32]
JEOL 2100F [31]
FEI/PHILIPS CM200FEG/ST [26]
FEI/PHILIPS CM200T [26]
ZEISS LIBRA120PLUS [26]
JEOL 4000EX [24]
JEOL 1200EXII [21]
JEOL 3200FS [21]
JEOL KYOTO-3000SFF [21]
JEOL 3000SFF [20]
JEOL 4000 [17]
JEOL 1200EX [12]
JEOL 2200FSC [11]
TFS GLACIOS [11]
FEI/PHILIPS CM200FEG/UT [10]
JEOL 1400 [8]
FEI TECNAI 10 [6]
FEI/PHILIPS CM300FEG/ST [6]
JEOL 2000EX [6]
JEOL 100CX [5]
JEOL 2010 [5]
FEI/PHILIPS CM12 [4]
FEI/PHILIPS CM300FEG/HE [4]
FEI/PHILIPS EM420 [4]
JEOL CRYO ARM 300 [4]
FEI TECNAI SPHERA [3]
JEOL 1010 [3]
FEI TECNAI ARCTICA [2]
FEI/PHILIPS EM400 [2]
HITACHI H-9500SD [2]
JEOL 1200 [2]
JEOL 2010HC [2]
JEOL 2010HT [2]
JEOL 2010UHR [2]
TFS TALOS [2]
FEI/PHILIPS CM200FEG/SOPHIE [1]
HITACHI EF2000 [1]
HITACHI H7600 [1]
JEOL 2000EXII [1]
JEOL 2011 [1]
TFS TITAN THEMIS [1]
ZEISS LEO912 [1]

Electron Source

Film or detector model

KODAK SO-163 FILM [1047]
GATAN ULTRASCAN 4000 4K X 4K [558]
TVIPS TEMCAM-F416 4K X 4K [347]
GATAN K2 SUMMIT 4K X 4K [250]
FEI FALCON II 4K X 4K [246]
GATAN K2 4K X 4K [230]
FEI EAGLE 4K X 4K [146]
TVIPS TEMCAM-F415 4K X 4K [144]
GENERIC CCD [113]
GENERIC GATAN 4K X 4K [111]
GATAN K3 6K X 4K [101]
FEI FALCON IV 4K X 4K [80]
GENERIC TVIPS 4K X 4K [77]
GATAN K3 BIOQUANTUM 6K X 4K [66]
GATAN ULTRASCAN 1000 2K X 2K [66]
GENERIC GATAN [53]
TVIPS TEMCAM-F816 8K X 8K [44]
GATAN K2 QUANTUM 4K X 4K [42]
GATAN MULTISCAN [41]
FEI FALCON I 4K X 4K [40]
OTHER [32]
TVIPS TEMCAM-F224 2K X 2K [25]
FEI CETA 4K X 4K [23]
DIRECT ELECTRON DE-12 4K X 3K [21]
FEI FALCON III 4K X 4K [20]
TFS FALCON 4I 4K X 4K [19]
FEI EAGLE 2K X 2K [18]
GENERIC GATAN 2K X 2K [17]
DIRECT ELECTRON DE-20 5K X 3K [11]
GENERIC CCD 2K X 2K [11]
GENERIC FILM [11]
GENERIC TVIPS [11]
KODAK 4489 FILM [11]
AGFA SCIENTA FILM [6]
GATAN ULTRASCAN 10000 10K X 10K [5]
GATAN ORIUS SC200 2K X 2K [4]
DIRECT ELECTRON DE-10 5K X 4K [3]
GENERIC IMAGE PLATES [3]
GENERIC TVIPS 2K X 2K [3]
SIA 15C 3K X 3K [2]
DIRECT ELECTRON DE-16 4K X 4K [1]
GATAN K3 BIOCONTINUUM 6K X 4K [1]
PROSCAN TEM-PIV 2K X 2K [1]

EMPIAR Experiment type

EMPIAR Image category

External links

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EMD-54700

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3D View

Chlorophyll synthase in complex with the LHC-like protein HliD, ChlGx1-HliDx2 complex, apo sample

CryoEM

Release date: Aug. 19, 2026
Resolution: 6.8 Å
EM Method: Single-particle

Shvarev D, Wysocka A, Morey-Burrows F, Panas K, Pazuki A, Kulik N, Proctor M, Pilny J, Hunter N, Hitchcock A, Sobotka R

To Be Published

EMD-54701

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3D View

Chlorophyll synthase in complex with the LHC-like protein HliD, ChlGx1-HliDx2 complex, GGPP sample

CryoEM

Release date: Aug. 19, 2026
Resolution: 6.1 Å
EM Method: Single-particle

Shvarev D, Wysocka A, Morey-Burrows F, Panas K, Pazuki A, Kulik N, Proctor M, Pilny J, Hunter N, Hitchcock A, Sobotka R

To Be Published

EMPIAR-13556

Raw data for cryo-electron tomograms of mitochondria in T cells from lung adenocarcinoma patients after in vitro restimulation

Release date: July 31, 2026
Dataset size: 147.6 GB
Experiment type: FIB-SEM

Chen J, Su L, Pan B, Sang J, Li L, Huang J, Hu Z, Wang L, Zhang X, Jin J

To Be Published

Image sets:

Raw multi-frame micrographs of cryo-ET data of mitochondria in T cells from middle-aged and older lung adenocarcinoma patients

EMPIAR-13540

Cryo-electron tomography reveals paracellular claudin-15 pores at the tight junction

Release date: July 17, 2026
Dataset size: 831.4 GB
Experiment type: FIB-SEM

Demchenko EA, McGuinness S, Wood S, Kainov J, Pappas V, Austin J, Hyatt D, Khalili-Araghi F, Shen L, Weber CR

Biophys J (2026) [ Pubmed: 42343561 DOI: 10.1016/j.bpj.2026.06.027 ]

Image sets:

CLDN15
quinKO

EMD-67081

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3D View

Subtomogram average of 70S ribosome 11x11 using CRYO ARM 300II

CryoEM

Release date: July 15, 2026
Resolution: 2.86 Å
EM Method: Subtomogram averaging

Makino F, Yanagisawa H, Eisenstein F, Miyata T, Kinoshita M, Kikkawa M, Namba K

Aims Biophys (2026) 13 pp. 131-142 [ DOI: doi:10.3934/biophy.2026008 ]

EMD-56861

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3D View

In situ ribosome from HeLa cells

CryoEM

Release date: July 8, 2026
Resolution: 6.8 Å
EM Method: Subtomogram averaging

Gemin O, Armijo V, Lecomte L, Hons M, Deckers T, Bissardon C, Rossi C, Lauzier K, Janocha R, Felisaz F, Sinoir J, Linares R, Babenko A, Kovalev K, Prokhorova I, Khusainov I, Schreiner C, Kolesnikova O, Salo VT, Schneider S, Bowler MW, Wolff G, Galej WP, Mahamid J, Muller CW, Carugo KD, Eustermann S, Mattei S, Cipriani F, Papp G