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natural_source_ncbi_code:"77920"

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [8]
  • DNA [3]
  • RNA [3]
  • Ligand [2]

Organism

  • Phage #d [8]
  • Bacillus sp. dsm 5850 [2]
  • Pseudomonas virus pap3 [2]
  • Biggievirus mos11 [2]
  • Streptococcus thermophilus [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [1]
  • 500-1000 kDa [3]

Release Date

  • 2024 [2]
  • 2023 [1]
  • 2022 [2]
  • 2021 [3]

Author by name

  • Al-shayeb B [2]
  • Banfield JF [2]
  • Chen L [2]
  • Cingolani G [2]
  • David Hou Cf [2]
  • Dong P [2]
  • Doudna JA [2]
  • Fu L [2]
  • Herbst DA [2]
  • Hou C-FD [2]
  • Jing D [2]
  • Li F [2]
  • Li L [2]
  • Li S [2]
  • Li Y [2]
  • Lokareddy RK [2]
  • Nogales E [2]
  • Pausch P [2]
  • Soczek K [2]
  • Soczek KM [2]
  • Sun L [2]
  • Swanson NA [2]
  • Tsuchida CA [2]
  • Wu Y [2]
  • Xia N [2]
  • Xiao F [2]
  • Yang J [2]
  • Yang R [2]
  • Zhang H [2]
  • Zheng Q [2]
  • Zhu C [2]
  • Carabias A [1]
  • Carabias Del Rey A [1]
  • Chen Q [1]
  • Cheng J [1]
  • Erlendsson S [1]
  • Fugilsang A [1]
  • Fuglsang A [1]
  • Jia T [1]
  • Luo Y [1]
  • Montoya G [1]
  • Mou B [1]
  • Pape T [1]
  • Qi S [1]
  • Sofos N [1]
  • Stella S [1]
  • Su Z [1]
  • Tang D [1]
  • Temperini P [1]
  • Yao S [1]
  • Yu Y [1]

Author by ORCID

  • Zhu C [2]
  • Li F [2]
  • Doudna JA [2]
  • Nogales E [2]
  • Zhang H [2]
  • Al-shayeb B [2]
  • Li S [2]
  • Wu Y [2]
  • Yang J [2]
  • Zheng Q [2]
  • Sun L [2]
  • Chen L [2]
  • Xia N [2]
  • Soczek KM [2]
  • Herbst DA [2]
  • Yang R [2]
  • Li Y [2]
  • Fuglsang A [1]
  • Pape T [1]
  • Chen Q [1]
  • Yu Y [1]
  • Erlendsson S [1]
  • Sofos N [1]
  • Montoya G [1]
  • Stella S [1]
  • Luo Y [1]
  • Temperini P [1]

Journal

  • J MOL BIOL [2]
  • NAT STRUCT MOL BIOL [2]
  • SCI ADV [2]
  • INNOVATION (NY) [1]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]
  • CTFFIND [1]
  • WARP [1]

Microscope

  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [2]
  • FEI TITAN [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [8]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • AlphaFold DB [1]
  • EMPIAR [1]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-38302
Download Map
3D View
Cryo-EM structure of defence-associated sirtuin 2 DSR2 H171A protein in complex with DSR anti-defence 1 DSAD1
Release date: Oct. 23, 2024
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8xfe
Q-score: 0.465

Zhang H, Li Y, Li L, Chen L, Zhu C, Sun L, Dong P, Jing D, Yang J, Fu L, Xiao F, Xia N, Li S, Zheng Q, Wu Y

Sci Adv (2024) 10 pp. eadn5691-eadn5691 [ Pubmed: 39083599 DOI: doi:10.1126/sciadv.adn5691 ]

EMD-38303
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3D View
Cryo-EM structure of defence-associatedsirtuin 2 DSR2 H171A protein in complex with SPR phage tail tube protein
Release date: Oct. 23, 2024
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8xff
Q-score: 0.442

Zhang H, Li Y, Li L, Chen L, Zhu C, Sun L, Dong P, Jing D, Yang J, Fu L, Xiao F, Xia N, Li S, Zheng Q, Wu Y

Sci Adv (2024) 10 pp. eadn5691-eadn5691 [ Pubmed: 39083599 DOI: doi:10.1126/sciadv.adn5691 ]

EMD-34809
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3D View
Streptococcus thermophilus Cas1-Cas2- prespacer ternary complex
Release date: Sept. 13, 2023
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8hi1
Q-score: 0.473

Tang D, Jia T, Luo Y, Mou B, Cheng J, Qi S, Yao S, Su Z, Yu Y, Chen Q

Innovation (NY) (2023) 4 pp. 100495-100495 [ Pubmed: 37663930 DOI: doi:10.1016/j.xinn.2023.100495 ]

EMD-25560
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3D View
Kinetically trapped Pseudomonas-phage PaP3 portal protein - delta barrel mutant class-2
Release date: March 30, 2022
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7sz4
Q-score: 0.157

David Hou CF, Swanson NA, Li F, Yang R, Lokareddy RK, Cingolani G

J Mol Biol (2022) 434 pp. 167537-167537 [ Pubmed: 35278476 DOI: doi:10.1016/j.jmb.2022.167537 ]

EMD-25562
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3D View
Kinetically trapped Pseudomonas-phage PaP3 portal protein - delta barrel mutant class-3
Release date: March 30, 2022
Resolution: 6.24 Å
EM Method: Single-particle
Fitted PDBs: 7sz6
Q-score: 0.127

David Hou CF, Swanson NA, Li F, Yang R, Lokareddy RK, Cingolani G

J Mol Biol (2022) 434 pp. 167537-167537 [ Pubmed: 35278476 DOI: doi:10.1016/j.jmb.2022.167537 ]

EMD-23600
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3D View
Cryo-EM structure of CasPhi-2 Cas12j bound to crRNA and DNA
Release date: Aug. 4, 2021
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7lys
Q-score: 0.517

Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA

Nat Struct Mol Biol (2021) 28 pp. 652-661 [ DOI: doi:10.1038/s41594-021-00632-3 Pubmed: 34381246 ]

EMD-23678
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3D View
Cryo-EM structure of CasPhi-2 Cas12j bound to crRNA
Release date: Aug. 4, 2021
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7m5o
Q-score: 0.389

Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA

Nat Struct Mol Biol (2021) 28 pp. 652-661 [ DOI: doi:10.1038/s41594-021-00632-3 Pubmed: 34381246 ]

EMD-12827
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3D View
Raw data
EMPIAR-12791
Structure of the mini-RNA-guided endonuclease CRISPR-Cas_phi3
Release date: July 21, 2021
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 7odf
Q-score: 0.548

Carabias A, Fuglsang A, Temperini P, Pape T, Sofos N, Stella S, Erlendsson S, Montoya G

Nat Commun (2021) 12 pp. 4476-4476 [ DOI: doi:10.1038/s41467-021-24707-3 Pubmed: 34294706 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [8]
  • DNA [3]
  • RNA [3]
  • Ligand [2]

Organism

  • Phage #d [8]
  • Bacillus sp. dsm 5850 [2]
  • Pseudomonas virus pap3 [2]
  • Biggievirus mos11 [2]
  • Streptococcus thermophilus [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [1]
  • 500-1000 kDa [3]

Release Date

  • 2024 [2]
  • 2023 [1]
  • 2022 [2]
  • 2021 [3]

Author by name

  • Al-shayeb B [2]
  • Banfield JF [2]
  • Chen L [2]
  • Cingolani G [2]
  • David Hou Cf [2]
  • Dong P [2]
  • Doudna JA [2]
  • Fu L [2]
  • Herbst DA [2]
  • Hou C-FD [2]
  • Jing D [2]
  • Li F [2]
  • Li L [2]
  • Li S [2]
  • Li Y [2]
  • Lokareddy RK [2]
  • Nogales E [2]
  • Pausch P [2]
  • Soczek K [2]
  • Soczek KM [2]
  • Sun L [2]
  • Swanson NA [2]
  • Tsuchida CA [2]
  • Wu Y [2]
  • Xia N [2]
  • Xiao F [2]
  • Yang J [2]
  • Yang R [2]
  • Zhang H [2]
  • Zheng Q [2]
  • Zhu C [2]
  • Carabias A [1]
  • Carabias Del Rey A [1]
  • Chen Q [1]
  • Cheng J [1]
  • Erlendsson S [1]
  • Fugilsang A [1]
  • Fuglsang A [1]
  • Jia T [1]
  • Luo Y [1]
  • Montoya G [1]
  • Mou B [1]
  • Pape T [1]
  • Qi S [1]
  • Sofos N [1]
  • Stella S [1]
  • Su Z [1]
  • Tang D [1]
  • Temperini P [1]
  • Yao S [1]
  • Yu Y [1]

Author by ORCID

  • Zhu C [2]
  • Li F [2]
  • Doudna JA [2]
  • Nogales E [2]
  • Zhang H [2]
  • Al-shayeb B [2]
  • Li S [2]
  • Wu Y [2]
  • Yang J [2]
  • Zheng Q [2]
  • Sun L [2]
  • Chen L [2]
  • Xia N [2]
  • Soczek KM [2]
  • Herbst DA [2]
  • Yang R [2]
  • Li Y [2]
  • Fuglsang A [1]
  • Pape T [1]
  • Chen Q [1]
  • Yu Y [1]
  • Erlendsson S [1]
  • Sofos N [1]
  • Montoya G [1]
  • Stella S [1]
  • Luo Y [1]
  • Temperini P [1]

Journal

  • J MOL BIOL [2]
  • NAT STRUCT MOL BIOL [2]
  • SCI ADV [2]
  • INNOVATION (NY) [1]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]
  • CTFFIND [1]
  • WARP [1]

Microscope

  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F30 [2]
  • TFS GLACIOS [2]
  • FEI TITAN [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • FEI FALCON IV 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [8]
  • PDBe-Kb [4]
  • UniProt [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • AlphaFold DB [1]
  • EMPIAR [1]