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natural_source_ncbi_code:"2905945"

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [5]
  • Protein [5]
  • DNA [2]
  • RNA [2]

Organism

  • Pseudomonas phage phikz [6]
  • Pseudomonas phage phikz [3]
  • Pseudomonas aeruginosa [1]
  • Pseudomonas aeruginosa [1]
  • Pseudomonas virus pa7 [1]

EM Method

  • Single-particle [5]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 250-500 kDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2023 [1]
  • 2021 [2]

Author by name

  • Aylett CHS [4]
  • Ramlaul K [4]
  • Yakunina M [4]
  • De Martin Garrido N [4]
  • Artamonova T [2]
  • Chen CS [2]
  • Lai Wan Loong Yte [2]
  • Litvinova A [2]
  • Melnikov AS [2]
  • Orekhova M [2]
  • Serdobintsev P [2]
  • Deymartin Garrido N [2]
  • Asavavimol A [1]
  • Bottcher B [1]
  • Cafferata A [1]
  • Cameron M [1]
  • Chen C [1]
  • Chihara K [1]
  • Chiu N [1]
  • Corbett K [1]
  • Davydov D [1]
  • Desai I [1]
  • Diaz G [1]
  • Dutton R [1]
  • Gerovac M [1]
  • Grose JH [1]
  • Guereca M [1]
  • Hearst K [1]
  • Huang L [1]
  • Jacobs E [1]
  • Johnson A [1]
  • Kahn S [1]
  • Koch R [1]
  • Laughlin TG [1]
  • Lavigne R [1]
  • Lee A [1]
  • Lee J [1]
  • Martinez A [1]
  • Meyer J [1]
  • Norquist M [1]
  • Pau T [1]
  • Pogliano J [1]
  • Pogliano K [1]
  • Prasad G [1]
  • Prichard A [1]
  • Saam K [1]
  • Sandhu M [1]
  • Sarabia AJ [1]
  • Schumaker S [1]
  • Sonin A [1]
  • Spencer T [1]
  • Sy A [1]
  • Thomas KP [1]
  • Uyeno A [1]
  • Villa E [1]
  • Vogel J [1]
  • Wicke L [1]
  • Zhao A [1]

Author by ORCID

  • Yakunina M [4]
  • De Martin Garrido N [2]
  • Deymartin Garrido N [2]
  • Orekhova M [2]
  • Melnikov AS [2]
  • Aylett CHS [2]
  • Lavigne R [1]
  • Wicke L [1]
  • Chihara K [1]
  • Gerovac M [1]
  • Bottcher B [1]
  • Vogel J [1]

Journal

  • J MOL BIOL [2]
  • NUCLEIC ACIDS RES [2]
  • BIORXIV [1]
  • NAT MICROBIOL [1]

Software

  • RELION [5]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • DYNAMO [1]
  • IMOD [1]
  • MATLAB [1]

Microscope

  • FEI TITAN KRIOS [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON III 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • ChEBI [5]
  • DrugBank [5]
  • PDB [5]
  • PDBe-Kb [5]
  • UniProt [5]
  • ChEMBL [4]
  • Gene Ontology [4]
  • EMPIAR [2]
  • AlphaFold DB [1]
  • InterPro [1]
  • Pfam [1]
Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
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EMD-54012
Download Map
3D View
Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to an analogue of its promoter
Release date: July 16, 2025
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9rjs
Q-score: 0.577

de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M

J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]

EMD-18661
Download Map
3D View
Structure of the Bacteriophage PhiKZ non-virion RNA Polymerase bound to DNA and RNA
Release date: July 31, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8que
Q-score: 0.472

de Martin Garrido N, Chen CS, Ramlaul K, Aylett CHS, Yakunina M

J Mol Biol (2024) 436 pp. 168713-168713 [ DOI: doi:10.1016/j.jmb.2024.168713 Pubmed: 39029888 ]

EMD-16566
Download Map
3D View
70S-PHIKZ014 PHIKZ phage protein occupied ribosome
Release date: Jan. 24, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cd1
Q-score: 0.461

Gerovac M, Chihara K, Wicke L, Bottcher B, Lavigne R, Vogel J

Nat Microbiol (2024) 9 pp. 787-800 [ Pubmed: 38443577 DOI: doi:10.1038/s41564-024-01616-x ]

EMD-28010
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3D View
Raw data
EMPIAR-11198
Pseudomonas phage phiKZ PhuZ Filament
Release date: March 15, 2023
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Prichard A, Lee J, Laughlin TG, Lee A, Thomas KP, Sy A, Spencer T, Asavavimol A, Cafferata A, Cameron M, Chiu N, Davydov D, Desai I, Diaz G, Guereca M, Hearst K, Huang L, Jacobs E, Johnson A, Kahn S, Koch R, Martinez A, Norquist M, Pau T, Prasad G, Saam K, Sandhu M, Sarabia AJ, Schumaker S, Sonin A, Uyeno A, Zhao A, Corbett K, Pogliano K, Meyer J, Grose JH, Villa E, Dutton R, Pogliano J

bioRxiv (2023) [ Pubmed: 36865095 DOI: doi:10.1101/2023.02.24.529968 ]

EMD-12885
Download Map
3D View
Raw data
EMPIAR-10707 EMPIAR-10709
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase - class including clamp
Release date: July 7, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ogp
Q-score: 0.441

deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M

Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]

EMD-12886
Download Map
3D View
Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase
Release date: July 7, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ogr
Q-score: 0.527

deYMartin Garrido N, Orekhova M, Lai Wan Loong YTE, Litvinova A, Ramlaul K, Artamonova T, Melnikov AS, Serdobintsev P, Aylett CHS, Yakunina M

Nucleic Acids Res (2021) 49 pp. 7732-7739 [ Pubmed: 34181731 DOI: doi:10.1093/nar/gkab539 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [5]
  • Protein [5]
  • DNA [2]
  • RNA [2]

Organism

  • Pseudomonas phage phikz [6]
  • Pseudomonas phage phikz [3]
  • Pseudomonas aeruginosa [1]
  • Pseudomonas aeruginosa [1]
  • Pseudomonas virus pa7 [1]

EM Method

  • Single-particle [5]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 250-500 kDa [4]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2024 [2]
  • 2023 [1]
  • 2021 [2]

Author by name

  • Aylett CHS [4]
  • Ramlaul K [4]
  • Yakunina M [4]
  • De Martin Garrido N [4]
  • Artamonova T [2]
  • Chen CS [2]
  • Lai Wan Loong Yte [2]
  • Litvinova A [2]
  • Melnikov AS [2]
  • Orekhova M [2]
  • Serdobintsev P [2]
  • Deymartin Garrido N [2]
  • Asavavimol A [1]
  • Bottcher B [1]
  • Cafferata A [1]
  • Cameron M [1]
  • Chen C [1]
  • Chihara K [1]
  • Chiu N [1]
  • Corbett K [1]
  • Davydov D [1]
  • Desai I [1]
  • Diaz G [1]
  • Dutton R [1]
  • Gerovac M [1]
  • Grose JH [1]
  • Guereca M [1]
  • Hearst K [1]
  • Huang L [1]
  • Jacobs E [1]
  • Johnson A [1]
  • Kahn S [1]
  • Koch R [1]
  • Laughlin TG [1]
  • Lavigne R [1]
  • Lee A [1]
  • Lee J [1]
  • Martinez A [1]
  • Meyer J [1]
  • Norquist M [1]
  • Pau T [1]
  • Pogliano J [1]
  • Pogliano K [1]
  • Prasad G [1]
  • Prichard A [1]
  • Saam K [1]
  • Sandhu M [1]
  • Sarabia AJ [1]
  • Schumaker S [1]
  • Sonin A [1]
  • Spencer T [1]
  • Sy A [1]
  • Thomas KP [1]
  • Uyeno A [1]
  • Villa E [1]
  • Vogel J [1]
  • Wicke L [1]
  • Zhao A [1]

Author by ORCID

  • Yakunina M [4]
  • De Martin Garrido N [2]
  • Deymartin Garrido N [2]
  • Orekhova M [2]
  • Melnikov AS [2]
  • Aylett CHS [2]
  • Lavigne R [1]
  • Wicke L [1]
  • Chihara K [1]
  • Gerovac M [1]
  • Bottcher B [1]
  • Vogel J [1]

Journal

  • J MOL BIOL [2]
  • NUCLEIC ACIDS RES [2]
  • BIORXIV [1]
  • NAT MICROBIOL [1]

Software

  • RELION [5]
  • CRYOSPARC [1]
  • CTFFIND [1]
  • DYNAMO [1]
  • IMOD [1]
  • MATLAB [1]

Microscope

  • FEI TITAN KRIOS [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON III 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • ChEBI [5]
  • DrugBank [5]
  • PDB [5]
  • PDBe-Kb [5]
  • UniProt [5]
  • ChEMBL [4]
  • Gene Ontology [4]
  • EMPIAR [2]
  • AlphaFold DB [1]
  • InterPro [1]
  • Pfam [1]