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molecule
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Current Database
- EMPIAR [1461]
- EMDB [1043]
Current status
- REL [2504]
Sample type
- Complex [858]
- Protein [673]
- Ligand [435]
- RNA [209]
- Sample [114]
- DNA [96]
- Cellular component [66]
- Virus [65]
- Other [6]
- Tissue [5]
- Cell [3]
Organism
- Homo sapiens [419]
- Synthetic construct [244]
- Dna molecule [55]
- Mus musculus [53]
- Saccharomyces cerevisiae [42]
- Oryctolagus cuniculus [41]
- Escherichia coli [33]
- Human immunodeficiency virus 1 [31]
- Gallus gallus [28]
- Mycobacterium tuberculosis [21]
- Amanita phalloides [20]
- Rattus norvegicus [18]
- Severe acute respiratory syndrome coronavirus [17]
- Lama glama [17]
- Bos taurus [13]
- Influenza a virus [12]
- Saccharomyces cerevisiae [12]
- Simian-human immunodeficiency virus [9]
- Tetrahymena thermophila [9]
- Escherichia coli [9]
- Monkeypox virus [7]
- Feline calicivirus [7]
- Thermosynechococcus elongatus [7]
- Shigella flexneri [7]
- Acinetobacter baylyi [7]
- Xenopus laevis [7]
- Felis catus [7]
- Enterobacteria phage t4 [6]
- Cricetulus griseus [5]
- Rotavirus a [5]
- Escherichia phage ms2 [5]
- Streptomyces avidinii [5]
- Chaetomium thermophilum [5]
- Plasmodium falciparum [5]
- Drosophila melanogaster [5]
- Ovis aries [5]
- African swine fever virus [4]
- Enterobacteria phage t4 [4]
- Human mastadenovirus c [4]
- Severe acute respiratory syndrome coronavirus [4]
- Thermococcus kodakarensis [4]
- Orbicella faveolata [4]
- Mycobacterium tuberculosis [4]
- Hepatitis b virus [3]
- Tequatrovirus t6 [3]
- Plasmodium vivax [3]
- Geobacillus stearothermophilus [3]
- Adeno-associated virus [3]
- Salmonella enterica [3]
- Thermus thermophilus [3]
- Chlamydomonas reinhardtii [3]
- Arabidopsis thaliana [3]
- Dictyostelium discoideum [3]
- Neisseria meningitidis [3]
- Danio rerio [3]
- Fusobacterium nucleatum [3]
- Human herpesvirus 1 [2]
- Simplexvirus humanalpha2 [2]
- Human mastadenovirus b [2]
- Eastern equine encephalitis virus [2]
- Venezuelan equine encephalitis virus [2]
- Dengue virus [2]
- Synechocystis sp. pcc 6803 [2]
- Enterovirus b [2]
- Rhinovirus b [2]
- Human metapneumovirus [2]
- Adeno-associated dependoparvovirus a [2]
- Vicugna pacos [2]
- Spinacia oleracea [2]
- Chikungunya virus [2]
- Rhizobium tropici [2]
- Yarrowia lipolytica [2]
- Toxoplasma gondii [2]
- Zika virus [2]
- Vibrio parahaemolyticus [2]
- Apis mellifera [2]
- Xenopus borealis [2]
- Meleagris gallopavo [2]
- Ramazzottius varieornatus [2]
- Macaca mulatta [2]
- (no species) [2]
- Komagataella phaffii [2]
- Sus scrofa [2]
- Mus sp. [1]
- Human herpesvirus 1 [1]
- Human herpesvirus 3 [1]
- Epstein-barr virus (strain gd1) [1]
- Epstein-barr virus (strain gd1) [1]
- Alphapapillomavirus 10 [1]
- Simian virus 40 [1]
- Escherichia phage lambda [1]
- Escherichia virus t7 [1]
- Rodent protoparvovirus 1 [1]
- Primate erythroparvovirus 1 [1]
- Adeno-associated dependoparvovirus a [1]
- (no species) [1]
- Chlorobaculum tepidum [1]
- Dengue virus [1]
- Murine coronavirus [1]
- (no species) [1]
EM Method
- Single-particle [716]
- Tomography [252]
- Helical reconstruction [51]
- Electron Crystallography [12]
- Subtomogram averaging [12]
Resolution
- < 2Å [9]
- ≥ 2Å and < 3Å [203]
- ≥ 3Å and < 4Å [342]
- ≥ 4Å and < 5Å [59]
- ≥ 5Å and < 6Å [13]
- ≥ 6Å and < 8Å [25]
- ≥ 8Å and < 12Å [51]
- ≥ 12Å and < 16Å [75]
- ≥ 16Å and < 20Å [15]
- ≥ 20Å and < 30Å [201]
- ≥ 30Å [23]
Model molecular weight
- 0-50 kDa [1]
- 50-100 kDa [4]
- 100-250 kDa [14]
- 250-500 kDa [20]
- 500-1000 kDa [7]
- 1-2 MDa [5]
- 2-5 MDa [9]
- 5-10 MDa [5]
- > 10 MDa [1]
Release Date
- 2026 [100]
- 2025 [713]
- 2024 [470]
- 2023 [524]
- 2022 [291]
- 2021 [98]
- 2020 [41]
- 2019 [104]
- 2018 [36]
- 2017 [9]
- 2016 [13]
- 2015 [38]
- 2014 [4]
- 2013 [8]
- 2012 [24]
- 2011 [6]
- 2010 [6]
- 2009 [5]
- 2008 [5]
- 2007 [1]
- 2006 [1]
- 2005 [1]
- 2004 [4]
- 2003 [2]
Author by name
- Liu J [252]
- Ren G [239]
- Zhang M [175]
- Andersen ES [171]
- Geary C [170]
- Mcrae EKS [170]
- Liu H [84]
- Lei D [64]
- Lei M [64]
- Marino JP [64]
- Chen J [47]
- Raunser S [42]
- Wang L [36]
- Darst SA [29]
- Glatt S [29]
- Ranson NA [29]
- Drabbels M [28]
- Lorenz UJ [28]
- Pospich S [28]
- Zhang Z [28]
- Zhang Y [27]
- Houdusse A [26]
- Shi Y [26]
- Sweeney HL [26]
- Liu Y [25]
- Wang J [25]
- Barrass SV [24]
- Hruby J [24]
- Nishizawa T [24]
- Wang F [24]
- Xiao L [24]
- Kotecha A [23]
- Ward AB [23]
- Hirst J [22]
- Li H [22]
- Liu L [22]
- Koziej L [21]
- Li S [21]
- Li W [21]
- Cerutti G [20]
- Chiu W [20]
- He Q [20]
- Herzik Jr Ma [20]
- Huang W [20]
- Park E [20]
- Xu L [20]
- Yang Y [20]
- Blanchard N [19]
- Feng Y [19]
- Forsyth C [19]
- Hoepfner D [19]
- Itskanov S [19]
- Junne T [19]
- Li Y [19]
- Mowry NJ [19]
- Paulino C [19]
- Sherriff R [19]
- Shi WQ [19]
- Spiess M [19]
- Carragher B [18]
- Harder OF [18]
- Lee DJ [18]
- Pellegrino J [18]
- Potter CS [18]
- Campbell EA [17]
- Cook BD [17]
- Eng ET [17]
- Fraser JS [17]
- Jinek M [17]
- Li Z [17]
- Namba K [17]
- Seiple IB [17]
- Wilson IA [17]
- Clark S [16]
- Elferich J [16]
- Ge J [16]
- Goehring A [16]
- Gouaux E [16]
- Kato T [16]
- Kwong PD [16]
- Matsui A [16]
- Ni D [16]
- Nureki O [16]
- Sawaya MR [16]
- Stahlberg H [16]
- Wei X [16]
- Zhang S [16]
- Boyer DR [15]
- Chirgadze DY [15]
- Das R [15]
- Eisenberg DS [15]
- Ge P [15]
- Inoue T [15]
- Lee Y [15]
- Lin W [15]
- Pacesa M [15]
- Rheinberger J [15]
- Roth BL [15]
- Shapiro L [15]
- Wang C [15]
Author by ORCID
- Cottrell CA [4]
- Yates 3Rd Jr [2]
- Diedrich JK [2]
- Schiffner T [2]
- Ward AB [2]
- Ni T [2]
- Noble AJ [2]
- Kim K [2]
- Luque D [2]
- Schief WR [2]
- Fuzik T [2]
- Zhang H [2]
- Lanphere C [2]
- Wang D [2]
- Aiken C [2]
- Gerard S [2]
- Li S [2]
- Pridal A [2]
- Javed A [2]
- Howorka S [2]
- Coveney PV [2]
- Cali T [2]
- Torres JL [2]
- Xia N [2]
- Zhao G [2]
- Zhang P [2]
- Clarke OB [2]
- Caston JR [2]
- Ahmad K [2]
- Roll-mecak A [2]
- Johnston JD [2]
- Orlova EV [2]
- Kwong PD [2]
- Plevka P [2]
- Vallese F [2]
- Paulson JC [2]
- Liu F [1]
- Dondio GM [1]
- Georgeson E [1]
- Shi WQ [1]
- Krupovic M [1]
- Wilkinson M [1]
- Moores CA [1]
- Campbell J [1]
- Beckers M [1]
- Mullen TM [1]
- Steinmetz MO [1]
- Ramlaul K [1]
- Srnko M [1]
- Xu L [1]
- Heilbronn R [1]
- Ma KM [1]
- Ustinova K [1]
- Burton DR [1]
- Podobnik M [1]
- Buchta D [1]
- Wu Y [1]
- Butcher SJ [1]
- Baldus M [1]
- Xu M [1]
- Kudlacova J [1]
- Spiess M [1]
- Smith ML [1]
- De Martin Garrido N [1]
- Moriya T [1]
- Watson CT [1]
- Phung I [1]
- Salcedo E [1]
- Lee JH [1]
- Poce G [1]
- Vacha R [1]
- Gil-cantero D [1]
- Itoh Y [1]
- Yang C [1]
- Smerdova L [1]
- Bubeck D [1]
- Solinc G [1]
- Atanassov I [1]
- Herzog F [1]
- Webster MW [1]
- Hoepfner D [1]
- Yang Z [1]
- Cameron AD [1]
- Backovic M [1]
- Sergiev P [1]
- Mietzsch M [1]
- Luo Y [1]
- Armache JP [1]
- Lea SM [1]
- Greber BJ [1]
- Shen Y [1]
- Cheng Y [1]
- Fraser CS [1]
- Ortega-esteban A [1]
- Kalgutkar AS [1]
- Halebian M [1]
- Shin Y [1]
- Novakova Z [1]
- Ruggeri RB [1]
- Nogales E [1]
Journal
- NAT COMMUN [573]
- BIORXIV [280]
- NATURE [194]
- NAT STRUCT MOL BIOL [145]
- PNAS [135]
- ELIFE [82]
- SCI REP [80]
- MOL CELL [73]
- SCI ADV [71]
- CELL [67]
- TO BE PUBLISHED [64]
- SCIENCE [61]
- STRUCTURE [55]
- NAT CHEM BIOL [39]
- CELL REP [37]
- NUCLEIC ACIDS RES [35]
- COMMUN BIOL [28]
- J BIOL CHEM [26]
- NAT METHODS [25]
- STRUCTURE (LONDON, ENGLAND : 1993) [22]
- PLOS PATHOG [20]
- J VIROL [18]
- EMBO J [17]
- J MOL BIOL [17]
- J STRUCT BIOL [17]
- J MED CHEM [15]
- NAT CELL BIOL [14]
- ACS CENT SCI [13]
- NAT MICROBIOL [12]
- J AM CHEM SOC [10]
- COMMUN CHEM [9]
- COMMUNICATIONS CHEMISTRY [9]
- JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [9]
- MOLECULES [9]
- NAT CATAL [9]
- COMMUNICATIONS BIOLOGY [8]
- CELL HOST MICROBE [6]
- J STRUCT BIOL X [6]
- LIFE SCI ALLIANCE [6]
- CELL CHEM BIOL [5]
- GENES DEV [5]
- MOL PHARMACOL [5]
- NAT PLANTS [5]
- NEURON [5]
- ACTA CRYSTALLOGR D STRUCT BIOL [4]
- ANGEW CHEM INT ED ENGL [4]
- BIOCHEM BIOPHYS RES COMMUN [4]
- CELL RES [4]
- COMMUN. BIOL. [4]
- J BIOMED SCI [4]
- MBIO [4]
- NAR [4]
- NAT COMM [4]
- NATURE CATALYSIS [4]
- PLOS ONE [4]
- PNAS NEXUS [4]
- STRUCT. [4]
- ACS CHEM BIOL [3]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
- ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [3]
- CHEMISTRY [3]
- IMMUNITY [3]
- INT J BIOL MACROMOL [3]
- INT J MOL SCI [3]
- INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
- ISCIENCE [3]
- NAT BIOTECHNOL [3]
- NATURE BIOTECHNOLOGY [3]
- NUCLEIC ACID RESEARCH [3]
- PLOS BIOL [3]
- PROTEIN SCI [3]
- RESEARCH SQUARE [3]
- SCI ADV. [3]
- SCI IMMUNOL [3]
- SCIENCE IMMUNOLOGY [3]
- ACS CATALYSIS [2]
- ADV SCI (WEINH) [2]
- ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) [2]
- BIOCHEM J [2]
- BIOPHYS J [2]
- BIOPOLYMERS [2]
- BLOOD [2]
- CELL DISCOV [2]
- CELL REP PHYS SCI [2]
- CELL REPORTS. PHYSICAL SCIENCE [2]
- CHEM [2]
- EMBO MOL MED [2]
- EMBO REP [2]
- FRONT MOL BIOSCI [2]
- MOL THER METHODS CLIN DEV [2]
- NA [2]
- NAT NANOTECHNOL [2]
- NAT. COMM. [2]
- NAT. COMMS [2]
- NATURE NANOTECHNOLOGY [2]
- NPJ VACCINES [2]
- NUCLEIC ACIDS RESEARCH [2]
- PLANT COMMUNICATIONS [2]
- PROCEEDINGS OF THE ACADEMY OF SCIENCES USA [2]
- PROTEIN SCIENCE [2]
Software
- CRYOSPARC [239]
- RELION [158]
- IPET [52]
- GCTF [44]
- SPHIRE [30]
- CTFFIND [25]
- CHIMERA [16]
- IMOD [16]
- TOMOALIGN [15]
- EMAN2, SPARX [14]
- FREALIGN [11]
- SPIDER [9]
- EM3DR2 [7]
- EMAN [7]
- EMAN2 [7]
- WARP [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- SPIDER, IMAGIC [6]
- XMIPP [6]
- CHIMERA, ROSETTA, PHENIX, COOT [5]
- CISTEM [5]
- CTFFIND3, EMAN2, RELION [5]
- JSPR [5]
- CHIMERA, PHENIX [4]
- EMAN, EMAN2, MPSA [4]
- EMFIT [4]
- GAP [4]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [4]
- AUTO3DEM [3]
- DYNAMO [3]
- EMAN, XMIPP [3]
- REFMAC [3]
- UCSF CHIMERAX [3]
- EMAN, MPSA [2]
- EMAN, SPIDER [2]
- IMAGIC, RICO, BSOFT, CTFFIND3, FPM [2]
- SPARX, RELION [2]
- AIMLESS [1]
- BKPR [1]
- BSOFT [1]
- CHIMERA, CNS, SITUS [1]
- CHIMERA, COOT, PHENIX, HHPRED [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- COOT [1]
- CTFFIND3 [1]
- CTFFIND4 [1]
- EMAN, XMIPP, SPIDER [1]
- EMAN1.9, XMIPP, 2.4 [1]
- EMAN2, IHRSR [1]
- EMAN2, RELION [1]
- FREALIGN, V9 [1]
- IHRS, SPIDER, EMAN2 [1]
- IMAGIC, SPIDER, EMAN [1]
- IMAGIC, V, TIGRIS, EMAN [1]
- ISOLDE [1]
- J3DR [1]
- JALIGN [1]
- LEGINON [1]
- MOLREP [1]
- MRC IMAGE PROCESSING PACKAGE [1]
- MRC, EMAN, SPIDER [1]
- O AND SITUS [1]
- PFT2 AND EM3DR2 [1]
- PFTSEARCH, PO2R, P3DR [1]
- POINTLESS [1]
- PROGRAM O [1]
- RELION2 [1]
- RICO [1]
- RICO, AND, FPM [1]
- RSREF [1]
- SCIPION [1]
- SIGNATURE, CTFFIND3, SPIDER, RELION [1]
- SIMPLE [1]
- SITUS [1]
- SPIDER, EMAN2 [1]
- SPIDER, FREALIGN [1]
- SPIDER,XMIPP [1]
- SPRING [1]
- STRUL [1]
- TOMOCTF [1]
- UCSF-CHIMERA, VMD [1]
- URO [1]
- URO AND VEDA [1]
- VEDA [1]
- XMIPP, SPIDER [1]
Microscope
- FEI TITAN KRIOS [594]
- TFS KRIOS [189]
- ZEISS LIBRA120PLUS [66]
- FEI TALOS ARCTICA [47]
- FEI TECNAI F20 [27]
- TFS GLACIOS [21]
- FEI POLARA 300 [14]
- FEI TECNAI SPIRIT [12]
- FEI TECNAI F30 [10]
- FEI/PHILIPS CM200FEG [10]
- JEOL 2200FS [9]
- FEI TECNAI 12 [7]
- JEOL 2010F [7]
- JEOL CRYO ARM 300 [6]
- JEOL 1230 [5]
- FEI TITAN [3]
- FEI/PHILIPS CM300FEG/T [3]
- FEI TECNAI ARCTICA [2]
- FEI/PHILIPS CM120T [2]
- JEOL 1200EXII [2]
- JEOL 3200FSC [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200T [1]
- FEI/PHILIPS EM420 [1]
- JEOL 1200 [1]
- TFS TALOS [1]
Electron Source
- FIELD EMISSION GUN [940]
- LAB6 [88]
- OTHER [8]
- TUNGSTEN HAIRPIN [7]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [303]
- GATAN K3 6K X 4K [207]
- GATAN K2 SUMMIT 4K X 4K [177]
- GATAN ULTRASCAN 4000 4K X 4K [92]
- FEI FALCON IV 4K X 4K [74]
- KODAK SO-163 FILM [34]
- FEI FALCON III 4K X 4K [29]
- GATAN K2 QUANTUM 4K X 4K [29]
- FEI FALCON II 4K X 4K [22]
- TVIPS TEMCAM-F416 4K X 4K [16]
- FEI CETA 4K X 4K [11]
- GATAN K3 BIOCONTINUUM 6K X 4K [9]
- GATAN K2 4K X 4K [7]
- TVIPS TEMCAM-F224 2K X 2K [5]
- TVIPS TEMCAM-F415 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- FEI EAGLE 4K X 4K [2]
- FEI FALCON I 4K X 4K [2]
- KODAK 4489 FILM [2]
- TFS FALCON 4I 4K X 4K [2]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-64 8K X 8K [1]
- GATAN K2 BASE 4K X 4K [1]
- GENERIC GATAN [1]
- GENERIC GATAN 4K X 4K [1]
- GENERIC TVIPS [1]
- GENERIC TVIPS 4K X 4K [1]
- OTHER [1]
EMPIAR Experiment type
- EMDB [1443]
- EXCEPTION [13]
- SSET [2]
- FIB-SEM [1]
- SBF-SEM [1]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [1262]
- MICROGRAPHS - SINGLE FRAME [286]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [67]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [35]
- TILT SERIES [28]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- RECONSTRUCTED VOLUMES [13]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [8]
- DIFFRACTION IMAGES [4]
- SUBTOMOGRAMS [4]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- STITCHED MAPS [1]
External links
- EMDB [1443]
- PDB [66]
- UniProt [62]
- PDBe-Kb [61]
- InterPro [59]
- Gene Ontology [58]
- AlphaFold DB [41]
- Pfam [39]
- ChEMBL [28]
- ChEBI [26]
- DrugBank [20]
- Complex Portal [10]
- EMPIAR [8]
- CATH [2]
Release date: March 6, 2026
Dataset size: 1.5 TB
Experiment type: EMDB
Dataset size: 1.5 TB
Experiment type: EMDB
Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T
J Biol Chem (2025) 301 [ Pubmed: 41197718 DOI: 10.1016/j.jbc.2025.110887 ]
Image sets:
- Ec holo, Ec holo ME dimer
Release date: March 6, 2026
Dataset size: 4.4 TB
Experiment type: EMDB
Dataset size: 4.4 TB
Experiment type: EMDB
Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T
J Biol Chem (2025) 301 [ Pubmed: 41197718 DOI: 10.1016/j.jbc.2025.110887 ]
Image sets:
- Ec ACO, Ec ACO ME dimer
Related EMDB
Release date: March 6, 2026
Dataset size: 1.9 TB
Experiment type: EMDB
Dataset size: 1.9 TB
Experiment type: EMDB
Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T
J Biol Chem (2025) 301 [ Pubmed: 41197718 DOI: 10.1016/j.jbc.2025.110887 ]
Image sets:
- Bb holo
Related EMDB
Release date: March 6, 2026
Dataset size: 1.3 TB
Experiment type: EMDB
Dataset size: 1.3 TB
Experiment type: EMDB
Ju J, Tomita K
Nat Commun (2025) 16 [ DOI: 10.1038/s41467-025-63021-0 Pubmed: 40841561 ]
Image sets:
- Cryo-EM structure of spMETTL16 in complex with U6 snRNA_delta17
Release date: March 5, 2026
Dataset size: 52.0 TB
Experiment type: EMDB
Dataset size: 52.0 TB
Experiment type: EMDB
Rasche R, Klink BU, Apken LH, Michalke E, Chen M, Oeckinghaus A, Gatsogiannis C, Kümmel D
Nat Commun (2025) [ DOI: 10.1038/s41467-025-61743-9 ]
Image sets:
- Motion corrected micrographs of RalGap
- Unaligned Falcon 4i movies in Electron Event Representation (EER)
Release date: March 4, 2026
Dataset size: 14.1 TB
Experiment type: EMDB
Dataset size: 14.1 TB
Experiment type: EMDB
Richman DE, Wendorff TJ, Rashid F, Beck C, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM
To Be Published
Image sets:
- Unaligned eer micrographs of M mazei Top6(A:E342Q)-306 bp minicircle DNA-ADPNP complex
Release date: March 4, 2026
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9clm
Q-score: 0.265
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9clm
Q-score: 0.265
Dubey S, Noinaj N
To Be Published
Chaplin AK, Hall C
To Be Published
Release date: March 4, 2026
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9j9x
Q-score: 0.409
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 9j9x
Q-score: 0.409
Pan ZL, Hu H, Su ZM
To Be Published
Release date: March 4, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9pns
Q-score: 0.43
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9pns
Q-score: 0.43
Wu Y, Vigneron S, Braz J, Srinivasan K, Fink EA, Huang XP, Xu X, Huebner H, Kim JY, Wang J, Pfeiffer T, Sakamoto K, Radchenko DS, Rodriguiz RM, Moroz YS, Irwin JJ, Gmeiner P, Billesboelle C, Roth BL, Basbaum AI, Manglik A, Wetsel WC, Shoichet BK
J Med Chem (2026) [ Pubmed: 41712624 DOI: doi:10.1021/acs.jmedchem.5c03810 ]
Filter By
Current Database
- EMPIAR [1461]
- EMDB [1043]
Current status
- REL [2504]
Sample type
- Complex [858]
- Protein [673]
- Ligand [435]
- RNA [209]
- Sample [114]
- DNA [96]
- Cellular component [66]
- Virus [65]
- Other [6]
- Tissue [5]
- Cell [3]
Organism
- Homo sapiens [419]
- Synthetic construct [244]
- Dna molecule [55]
- Mus musculus [53]
- Saccharomyces cerevisiae [42]
- Oryctolagus cuniculus [41]
- Escherichia coli [33]
- Human immunodeficiency virus 1 [31]
- Gallus gallus [28]
- Mycobacterium tuberculosis [21]
- Amanita phalloides [20]
- Rattus norvegicus [18]
- Severe acute respiratory syndrome coronavirus [17]
- Lama glama [17]
- Bos taurus [13]
- Influenza a virus [12]
- Saccharomyces cerevisiae [12]
- Simian-human immunodeficiency virus [9]
- Tetrahymena thermophila [9]
- Escherichia coli [9]
- Monkeypox virus [7]
- Feline calicivirus [7]
- Thermosynechococcus elongatus [7]
- Shigella flexneri [7]
- Acinetobacter baylyi [7]
- Xenopus laevis [7]
- Felis catus [7]
- Enterobacteria phage t4 [6]
- Cricetulus griseus [5]
- Rotavirus a [5]
- Escherichia phage ms2 [5]
- Streptomyces avidinii [5]
- Chaetomium thermophilum [5]
- Plasmodium falciparum [5]
- Drosophila melanogaster [5]
- Ovis aries [5]
- African swine fever virus [4]
- Enterobacteria phage t4 [4]
- Human mastadenovirus c [4]
- Severe acute respiratory syndrome coronavirus [4]
- Thermococcus kodakarensis [4]
- Orbicella faveolata [4]
- Mycobacterium tuberculosis [4]
- Hepatitis b virus [3]
- Tequatrovirus t6 [3]
- Plasmodium vivax [3]
- Geobacillus stearothermophilus [3]
- Adeno-associated virus [3]
- Salmonella enterica [3]
- Thermus thermophilus [3]
- Chlamydomonas reinhardtii [3]
- Arabidopsis thaliana [3]
- Dictyostelium discoideum [3]
- Neisseria meningitidis [3]
- Danio rerio [3]
- Fusobacterium nucleatum [3]
- Human herpesvirus 1 [2]
- Simplexvirus humanalpha2 [2]
- Human mastadenovirus b [2]
- Eastern equine encephalitis virus [2]
- Venezuelan equine encephalitis virus [2]
- Dengue virus [2]
- Synechocystis sp. pcc 6803 [2]
- Enterovirus b [2]
- Rhinovirus b [2]
- Human metapneumovirus [2]
- Adeno-associated dependoparvovirus a [2]
- Vicugna pacos [2]
- Spinacia oleracea [2]
- Chikungunya virus [2]
- Rhizobium tropici [2]
- Yarrowia lipolytica [2]
- Toxoplasma gondii [2]
- Zika virus [2]
- Vibrio parahaemolyticus [2]
- Apis mellifera [2]
- Xenopus borealis [2]
- Meleagris gallopavo [2]
- Ramazzottius varieornatus [2]
- Macaca mulatta [2]
- (no species) [2]
- Komagataella phaffii [2]
- Sus scrofa [2]
- Mus sp. [1]
- Human herpesvirus 1 [1]
- Human herpesvirus 3 [1]
- Epstein-barr virus (strain gd1) [1]
- Epstein-barr virus (strain gd1) [1]
- Alphapapillomavirus 10 [1]
- Simian virus 40 [1]
- Escherichia phage lambda [1]
- Escherichia virus t7 [1]
- Rodent protoparvovirus 1 [1]
- Primate erythroparvovirus 1 [1]
- Adeno-associated dependoparvovirus a [1]
- (no species) [1]
- Chlorobaculum tepidum [1]
- Dengue virus [1]
- Murine coronavirus [1]
- (no species) [1]
EM Method
- Single-particle [716]
- Tomography [252]
- Helical reconstruction [51]
- Electron Crystallography [12]
- Subtomogram averaging [12]
Resolution
- < 2Å [9]
- ≥ 2Å and < 3Å [203]
- ≥ 3Å and < 4Å [342]
- ≥ 4Å and < 5Å [59]
- ≥ 5Å and < 6Å [13]
- ≥ 6Å and < 8Å [25]
- ≥ 8Å and < 12Å [51]
- ≥ 12Å and < 16Å [75]
- ≥ 16Å and < 20Å [15]
- ≥ 20Å and < 30Å [201]
- ≥ 30Å [23]
Model molecular weight
- 0-50 kDa [1]
- 50-100 kDa [4]
- 100-250 kDa [14]
- 250-500 kDa [20]
- 500-1000 kDa [7]
- 1-2 MDa [5]
- 2-5 MDa [9]
- 5-10 MDa [5]
- > 10 MDa [1]
Release Date
- 2026 [100]
- 2025 [713]
- 2024 [470]
- 2023 [524]
- 2022 [291]
- 2021 [98]
- 2020 [41]
- 2019 [104]
- 2018 [36]
- 2017 [9]
- 2016 [13]
- 2015 [38]
- 2014 [4]
- 2013 [8]
- 2012 [24]
- 2011 [6]
- 2010 [6]
- 2009 [5]
- 2008 [5]
- 2007 [1]
- 2006 [1]
- 2005 [1]
- 2004 [4]
- 2003 [2]
Author by name
- Liu J [252]
- Ren G [239]
- Zhang M [175]
- Andersen ES [171]
- Geary C [170]
- Mcrae EKS [170]
- Liu H [84]
- Lei D [64]
- Lei M [64]
- Marino JP [64]
- Chen J [47]
- Raunser S [42]
- Wang L [36]
- Darst SA [29]
- Glatt S [29]
- Ranson NA [29]
- Drabbels M [28]
- Lorenz UJ [28]
- Pospich S [28]
- Zhang Z [28]
- Zhang Y [27]
- Houdusse A [26]
- Shi Y [26]
- Sweeney HL [26]
- Liu Y [25]
- Wang J [25]
- Barrass SV [24]
- Hruby J [24]
- Nishizawa T [24]
- Wang F [24]
- Xiao L [24]
- Kotecha A [23]
- Ward AB [23]
- Hirst J [22]
- Li H [22]
- Liu L [22]
- Koziej L [21]
- Li S [21]
- Li W [21]
- Cerutti G [20]
- Chiu W [20]
- He Q [20]
- Herzik Jr Ma [20]
- Huang W [20]
- Park E [20]
- Xu L [20]
- Yang Y [20]
- Blanchard N [19]
- Feng Y [19]
- Forsyth C [19]
- Hoepfner D [19]
- Itskanov S [19]
- Junne T [19]
- Li Y [19]
- Mowry NJ [19]
- Paulino C [19]
- Sherriff R [19]
- Shi WQ [19]
- Spiess M [19]
- Carragher B [18]
- Harder OF [18]
- Lee DJ [18]
- Pellegrino J [18]
- Potter CS [18]
- Campbell EA [17]
- Cook BD [17]
- Eng ET [17]
- Fraser JS [17]
- Jinek M [17]
- Li Z [17]
- Namba K [17]
- Seiple IB [17]
- Wilson IA [17]
- Clark S [16]
- Elferich J [16]
- Ge J [16]
- Goehring A [16]
- Gouaux E [16]
- Kato T [16]
- Kwong PD [16]
- Matsui A [16]
- Ni D [16]
- Nureki O [16]
- Sawaya MR [16]
- Stahlberg H [16]
- Wei X [16]
- Zhang S [16]
- Boyer DR [15]
- Chirgadze DY [15]
- Das R [15]
- Eisenberg DS [15]
- Ge P [15]
- Inoue T [15]
- Lee Y [15]
- Lin W [15]
- Pacesa M [15]
- Rheinberger J [15]
- Roth BL [15]
- Shapiro L [15]
- Wang C [15]
Author by ORCID
- Cottrell CA [4]
- Yates 3Rd Jr [2]
- Diedrich JK [2]
- Schiffner T [2]
- Ward AB [2]
- Ni T [2]
- Noble AJ [2]
- Kim K [2]
- Luque D [2]
- Schief WR [2]
- Fuzik T [2]
- Zhang H [2]
- Lanphere C [2]
- Wang D [2]
- Aiken C [2]
- Gerard S [2]
- Li S [2]
- Pridal A [2]
- Javed A [2]
- Howorka S [2]
- Coveney PV [2]
- Cali T [2]
- Torres JL [2]
- Xia N [2]
- Zhao G [2]
- Zhang P [2]
- Clarke OB [2]
- Caston JR [2]
- Ahmad K [2]
- Roll-mecak A [2]
- Johnston JD [2]
- Orlova EV [2]
- Kwong PD [2]
- Plevka P [2]
- Vallese F [2]
- Paulson JC [2]
- Liu F [1]
- Dondio GM [1]
- Georgeson E [1]
- Shi WQ [1]
- Krupovic M [1]
- Wilkinson M [1]
- Moores CA [1]
- Campbell J [1]
- Beckers M [1]
- Mullen TM [1]
- Steinmetz MO [1]
- Ramlaul K [1]
- Srnko M [1]
- Xu L [1]
- Heilbronn R [1]
- Ma KM [1]
- Ustinova K [1]
- Burton DR [1]
- Podobnik M [1]
- Buchta D [1]
- Wu Y [1]
- Butcher SJ [1]
- Baldus M [1]
- Xu M [1]
- Kudlacova J [1]
- Spiess M [1]
- Smith ML [1]
- De Martin Garrido N [1]
- Moriya T [1]
- Watson CT [1]
- Phung I [1]
- Salcedo E [1]
- Lee JH [1]
- Poce G [1]
- Vacha R [1]
- Gil-cantero D [1]
- Itoh Y [1]
- Yang C [1]
- Smerdova L [1]
- Bubeck D [1]
- Solinc G [1]
- Atanassov I [1]
- Herzog F [1]
- Webster MW [1]
- Hoepfner D [1]
- Yang Z [1]
- Cameron AD [1]
- Backovic M [1]
- Sergiev P [1]
- Mietzsch M [1]
- Luo Y [1]
- Armache JP [1]
- Lea SM [1]
- Greber BJ [1]
- Shen Y [1]
- Cheng Y [1]
- Fraser CS [1]
- Ortega-esteban A [1]
- Kalgutkar AS [1]
- Halebian M [1]
- Shin Y [1]
- Novakova Z [1]
- Ruggeri RB [1]
- Nogales E [1]
Journal
- NAT COMMUN [573]
- BIORXIV [280]
- NATURE [194]
- NAT STRUCT MOL BIOL [145]
- PNAS [135]
- ELIFE [82]
- SCI REP [80]
- MOL CELL [73]
- SCI ADV [71]
- CELL [67]
- TO BE PUBLISHED [64]
- SCIENCE [61]
- STRUCTURE [55]
- NAT CHEM BIOL [39]
- CELL REP [37]
- NUCLEIC ACIDS RES [35]
- COMMUN BIOL [28]
- J BIOL CHEM [26]
- NAT METHODS [25]
- STRUCTURE (LONDON, ENGLAND : 1993) [22]
- PLOS PATHOG [20]
- J VIROL [18]
- EMBO J [17]
- J MOL BIOL [17]
- J STRUCT BIOL [17]
- J MED CHEM [15]
- NAT CELL BIOL [14]
- ACS CENT SCI [13]
- NAT MICROBIOL [12]
- J AM CHEM SOC [10]
- COMMUN CHEM [9]
- COMMUNICATIONS CHEMISTRY [9]
- JOURNAL OF THE AMERICAN CHEMICAL SOCIETY [9]
- MOLECULES [9]
- NAT CATAL [9]
- COMMUNICATIONS BIOLOGY [8]
- CELL HOST MICROBE [6]
- J STRUCT BIOL X [6]
- LIFE SCI ALLIANCE [6]
- CELL CHEM BIOL [5]
- GENES DEV [5]
- MOL PHARMACOL [5]
- NAT PLANTS [5]
- NEURON [5]
- ACTA CRYSTALLOGR D STRUCT BIOL [4]
- ANGEW CHEM INT ED ENGL [4]
- BIOCHEM BIOPHYS RES COMMUN [4]
- CELL RES [4]
- COMMUN. BIOL. [4]
- J BIOMED SCI [4]
- MBIO [4]
- NAR [4]
- NAT COMM [4]
- NATURE CATALYSIS [4]
- PLOS ONE [4]
- PNAS NEXUS [4]
- STRUCT. [4]
- ACS CHEM BIOL [3]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
- ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [3]
- CHEMISTRY [3]
- IMMUNITY [3]
- INT J BIOL MACROMOL [3]
- INT J MOL SCI [3]
- INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES [3]
- ISCIENCE [3]
- NAT BIOTECHNOL [3]
- NATURE BIOTECHNOLOGY [3]
- NUCLEIC ACID RESEARCH [3]
- PLOS BIOL [3]
- PROTEIN SCI [3]
- RESEARCH SQUARE [3]
- SCI ADV. [3]
- SCI IMMUNOL [3]
- SCIENCE IMMUNOLOGY [3]
- ACS CATALYSIS [2]
- ADV SCI (WEINH) [2]
- ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) [2]
- BIOCHEM J [2]
- BIOPHYS J [2]
- BIOPOLYMERS [2]
- BLOOD [2]
- CELL DISCOV [2]
- CELL REP PHYS SCI [2]
- CELL REPORTS. PHYSICAL SCIENCE [2]
- CHEM [2]
- EMBO MOL MED [2]
- EMBO REP [2]
- FRONT MOL BIOSCI [2]
- MOL THER METHODS CLIN DEV [2]
- NA [2]
- NAT NANOTECHNOL [2]
- NAT. COMM. [2]
- NAT. COMMS [2]
- NATURE NANOTECHNOLOGY [2]
- NPJ VACCINES [2]
- NUCLEIC ACIDS RESEARCH [2]
- PLANT COMMUNICATIONS [2]
- PROCEEDINGS OF THE ACADEMY OF SCIENCES USA [2]
- PROTEIN SCIENCE [2]
Software
- CRYOSPARC [239]
- RELION [158]
- IPET [52]
- GCTF [44]
- SPHIRE [30]
- CTFFIND [25]
- CHIMERA [16]
- IMOD [16]
- TOMOALIGN [15]
- EMAN2, SPARX [14]
- FREALIGN [11]
- SPIDER [9]
- EM3DR2 [7]
- EMAN [7]
- EMAN2 [7]
- WARP [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- SPIDER, IMAGIC [6]
- XMIPP [6]
- CHIMERA, ROSETTA, PHENIX, COOT [5]
- CISTEM [5]
- CTFFIND3, EMAN2, RELION [5]
- JSPR [5]
- CHIMERA, PHENIX [4]
- EMAN, EMAN2, MPSA [4]
- EMFIT [4]
- GAP [4]
- SPIDER, IMAGIC, GAP, CNS, XPLOR [4]
- AUTO3DEM [3]
- DYNAMO [3]
- EMAN, XMIPP [3]
- REFMAC [3]
- UCSF CHIMERAX [3]
- EMAN, MPSA [2]
- EMAN, SPIDER [2]
- IMAGIC, RICO, BSOFT, CTFFIND3, FPM [2]
- SPARX, RELION [2]
- AIMLESS [1]
- BKPR [1]
- BSOFT [1]
- CHIMERA, CNS, SITUS [1]
- CHIMERA, COOT, PHENIX, HHPRED [1]
- CHIMERA, MODELLER, YUP.SCX [1]
- CHIMERA, YUP.SCX [1]
- CNS 1.3 [1]
- COOT [1]
- CTFFIND3 [1]
- CTFFIND4 [1]
- EMAN, XMIPP, SPIDER [1]
- EMAN1.9, XMIPP, 2.4 [1]
- EMAN2, IHRSR [1]
- EMAN2, RELION [1]
- FREALIGN, V9 [1]
- IHRS, SPIDER, EMAN2 [1]
- IMAGIC, SPIDER, EMAN [1]
- IMAGIC, V, TIGRIS, EMAN [1]
- ISOLDE [1]
- J3DR [1]
- JALIGN [1]
- LEGINON [1]
- MOLREP [1]
- MRC IMAGE PROCESSING PACKAGE [1]
- MRC, EMAN, SPIDER [1]
- O AND SITUS [1]
- PFT2 AND EM3DR2 [1]
- PFTSEARCH, PO2R, P3DR [1]
- POINTLESS [1]
- PROGRAM O [1]
- RELION2 [1]
- RICO [1]
- RICO, AND, FPM [1]
- RSREF [1]
- SCIPION [1]
- SIGNATURE, CTFFIND3, SPIDER, RELION [1]
- SIMPLE [1]
- SITUS [1]
- SPIDER, EMAN2 [1]
- SPIDER, FREALIGN [1]
- SPIDER,XMIPP [1]
- SPRING [1]
- STRUL [1]
- TOMOCTF [1]
- UCSF-CHIMERA, VMD [1]
- URO [1]
- URO AND VEDA [1]
- VEDA [1]
- XMIPP, SPIDER [1]
Microscope
- FEI TITAN KRIOS [594]
- TFS KRIOS [189]
- ZEISS LIBRA120PLUS [66]
- FEI TALOS ARCTICA [47]
- FEI TECNAI F20 [27]
- TFS GLACIOS [21]
- FEI POLARA 300 [14]
- FEI TECNAI SPIRIT [12]
- FEI TECNAI F30 [10]
- FEI/PHILIPS CM200FEG [10]
- JEOL 2200FS [9]
- FEI TECNAI 12 [7]
- JEOL 2010F [7]
- JEOL CRYO ARM 300 [6]
- JEOL 1230 [5]
- FEI TITAN [3]
- FEI/PHILIPS CM300FEG/T [3]
- FEI TECNAI ARCTICA [2]
- FEI/PHILIPS CM120T [2]
- JEOL 1200EXII [2]
- JEOL 3200FSC [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200T [1]
- FEI/PHILIPS EM420 [1]
- JEOL 1200 [1]
- TFS TALOS [1]
Electron Source
- FIELD EMISSION GUN [940]
- LAB6 [88]
- OTHER [8]
- TUNGSTEN HAIRPIN [7]
Film or detector model
- GATAN K3 BIOQUANTUM 6K X 4K [303]
- GATAN K3 6K X 4K [207]
- GATAN K2 SUMMIT 4K X 4K [177]
- GATAN ULTRASCAN 4000 4K X 4K [92]
- FEI FALCON IV 4K X 4K [74]
- KODAK SO-163 FILM [34]
- FEI FALCON III 4K X 4K [29]
- GATAN K2 QUANTUM 4K X 4K [29]
- FEI FALCON II 4K X 4K [22]
- TVIPS TEMCAM-F416 4K X 4K [16]
- FEI CETA 4K X 4K [11]
- GATAN K3 BIOCONTINUUM 6K X 4K [9]
- GATAN K2 4K X 4K [7]
- TVIPS TEMCAM-F224 2K X 2K [5]
- TVIPS TEMCAM-F415 4K X 4K [3]
- FEI EAGLE 2K X 2K [2]
- FEI EAGLE 4K X 4K [2]
- FEI FALCON I 4K X 4K [2]
- KODAK 4489 FILM [2]
- TFS FALCON 4I 4K X 4K [2]
- DIRECT ELECTRON DE-12 4K X 3K [1]
- DIRECT ELECTRON DE-64 8K X 8K [1]
- GATAN K2 BASE 4K X 4K [1]
- GENERIC GATAN [1]
- GENERIC GATAN 4K X 4K [1]
- GENERIC TVIPS [1]
- GENERIC TVIPS 4K X 4K [1]
- OTHER [1]
EMPIAR Experiment type
- EMDB [1443]
- EXCEPTION [13]
- SSET [2]
- FIB-SEM [1]
- SBF-SEM [1]
- SXT [1]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [1262]
- MICROGRAPHS - SINGLE FRAME [286]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [67]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [35]
- TILT SERIES [28]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [14]
- RECONSTRUCTED VOLUMES [13]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [8]
- DIFFRACTION IMAGES [4]
- SUBTOMOGRAMS [4]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- STITCHED MAPS [1]
External links
- EMDB [1443]
- PDB [66]
- UniProt [62]
- PDBe-Kb [61]
- InterPro [59]
- Gene Ontology [58]
- AlphaFold DB [41]
- Pfam [39]
- ChEMBL [28]
- ChEBI [26]
- DrugBank [20]
- Complex Portal [10]
- EMPIAR [8]
- CATH [2]