Electron Microscopy Data Bank

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modelling_software_ft:Coot

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Current Database

Current status

Sample type

Organism

Homo sapiens [90]
Escherichia coli [34]
Thermotoga maritima [18]
Synthetic construct [15]
Mus musculus [12]
Rattus norvegicus [11]
Arabidopsis thaliana [9]
Entamoeba histolytica [6]
Influenza a virus [5]
Methanosarcina mazei [4]
Escherichia coli [4]
Pseudomonas virus prd1 [3]
Saccharomyces cerevisiae [3]
Chaetomium thermophilum [3]
Yersinia entomophaga [3]
Lama glama [3]
Thermus virus p74-26 [2]
Caenorhabditis elegans [2]
Vibrio alginolyticus [2]
Hafnia alvei [1]
Adeno-associated dependoparvovirus a [1]
Rotavirus a [1]
Haloarcula hispanica icosahedral virus 2 [1]
Methanothermobacter marburgensis [1]
Candidatus saccharibacteria bacterium [1]
Bacteroidales bacterium [1]
Methanocaldococcus jannaschii [1]
Methanosarcina thermophila [1]
Thermus thermophilus [1]
Marchantia polymorpha [1]
Svunavirus gbsv1 [1]
Maackia amurensis [1]
Pomacea canaliculata [1]
Komagataella pastoris [1]
Platynereis dumerilii [1]
Fusarium vanettenii [1]
Vibrio cholerae [1]
Adeno-associated dependoparvovirus b [1]
Parus major [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Burger J [30]
Mielke T [30]
Spahn CMT [30]
Park J [29]
Asher WB [25]
Clarke OB [25]
Conigrave AD [25]
Eng E [25]
Fan QR [25]
Frangaj A [25]
Grassucci R [25]
Grasucci R [25]
Hendrickson WA [25]
Hu G [25]
Hu GB [25]
Javitch JA [25]
Lin X [25]
Lu G [25]
Lu Z [25]
Manning JJ [25]
Mendez J [25]
Wang L [25]
Ye J [25]
Zhang Z [25]
Zuo H [25]
Hou J [19]
Kossiakoff AA [19]
Erramilli SK [18]
Li T [18]
Nosol K [18]
Perozo E [18]
Pietrzak-lichwa K [18]
Schmandt N [18]
Tokarz P [18]
Zhao M [18]
Dabrowski M [16]
Diebolder CA [16]
Fluegel T [16]
Flugel T [16]
Guillen Schlippe Yv [16]
Schacherl M [16]
Schroeer B [16]
Sprink T [16]
Unbehaun A [16]
Balke A [14]
Lauer S [14]
Lauer SM [14]
Nikolay R [14]
Qin B [14]
Scheerer P [14]
Selbach M [14]
Vieira-vieira CH [14]
Nayak AR [12]
Temiakov D [12]
Zamudio-ochoa A [12]
Herbine K [11]
Chang A [9]
Dirksen RT [9]
Dridi H [9]
Groom L [9]
Kang J [9]
Leigh J [9]
Liu Y [9]
Luna-figueroa E [9]
Marks AR [9]
Miotto MC [9]
Reiken S [9]
Sobolevsky AI [9]
Tchagou C [9]
Weninger G [9]
Wronska A [9]
Yuan Q [9]
Zhao N [9]
Herbine KH [8]
Kuehlbrandt W [8]
Kuhlbrandt W [8]
Braun HP [7]
Dreimann M [7]
Klusch N [7]
Rugen N [7]
Senkler J [7]
Yelshanskaya MV [7]
Gangwar SP [6]
Gourinath S [6]
Grant T [6]
Grigorieff N [6]
Jones DR [6]
Kaushal PS [6]
Korman A [6]
Mishra S [6]
Sharma S [6]
Yen LY [6]
Abu-shmais A [5]
Andrews S [5]
Diaz-avalos R [5]
Furukawa H [5]
Kanekiyo M [5]
Karakas E [5]
Malla T [5]
Malla TN [5]

Author by ORCID

Mielke T [30]
Spahn CMT [30]
Javitch JA [25]
Asher WB [25]
Mendez J [25]
Lu Z [25]
Frangaj A [25]
Manning JJ [25]
Conigrave AD [25]
Eng E [25]
Zuo H [25]
Fan QR [25]
Hendrickson WA [25]
Hu GB [25]
Ye J [25]
Diebolder CA [16]
Guillen Schlippe Yv [16]
Schacherl M [16]
Dabrowski M [16]
Flugel T [16]
Scheerer P [14]
Vieira-vieira CH [14]
Balke A [14]
Qin B [14]
Burger J [14]
Selbach M [14]
Lauer SM [14]
Nikolay R [14]
Temiakov D [12]
Sobolevsky AI [9]
Kuhlbrandt W [8]
Senkler J [7]
Braun HP [7]
Rugen N [7]
Klusch N [7]
Dreimann M [7]
Kaushal PS [6]
Jones DR [6]
Grigorieff N [6]
Grant T [6]
Korman A [6]
Gangwar SP [6]
Tajima N [5]
Furukawa H [5]
Nayak AR [5]
D'arcy S [4]
Venugopal H [4]
Vervoort SJ [4]
Hinde E [4]
Gurzau AD [4]
Hardwick SW [4]
Ryu JK [4]
Davidovich C [4]
Koronakis V [4]
Yousef J [4]
Blewitt ME [4]
Greene NP [4]
Keenan CR [4]
Baldoni PL [4]
Allan RS [4]
Tan W [4]
Shakeel S [4]
Dagley LF [4]
Leis A [4]
Szewczyk P [4]
Symmons MF [4]
Corso LD [4]
Lee J [4]
Park J [4]
Reyes N [3]
Medlyn MJ [3]
Sillamaa S [3]
Backovic M [3]
Han Y [3]
Chen Z [3]
Pardon E [3]
Svenda M [3]
Steyaert J [3]
Reddy HK [3]
Perez C [3]
Chen B [3]
Nadezhdin KD [3]
Kramer DA [3]
Carroni M [3]
Neuberger A [3]
Singla A [3]
Rey FA [3]
Canul-tec JC [3]
Chen WC [3]
Sedman J [3]
Burstein E [3]
Marmorstein R [3]
Boesch DJ [3]
Cajiao AB [3]
Baek Y [2]
Martelli A [2]
Stokes DL [2]
Yue WW [2]
Viscardi MJ [2]
Yu X [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 208. Page 1 of 21

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EMD-49972

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CryoEM structure of M. mazei topoisomerase VI A-E342Q -minicircle DNA complex in cleavage state

Release date: Feb. 25, 2026
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9o0g

Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

To Be Published

EMD-70232

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Raw data

CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex

Release date: Feb. 25, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9o8p

Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

To Be Published

EMD-70239

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Raw data

CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state

Release date: Feb. 25, 2026
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9o8z

Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

To Be Published

EMD-70259

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Raw data

CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state

Release date: Feb. 25, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9o9m

Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

To Be Published

EMD-52713

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GBSV1 portal protein without the N-terminal tail

Release date: Feb. 18, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9i8c

Chong PJ, Chechik M, Jenkins H, Greive S, Antson F

To Be Published

EMD-63404

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PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha

Release date: Feb. 18, 2026
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9lut

Tsai PC, La Rocca R, Motose H, Shen JR, Akita F

Commun Biol (2026) 9 pp. 146-146 [ Pubmed: 41644713 DOI: doi:10.1038/s42003-026-09631-w ]

EMD-74981

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The ER membrane protein complex acts as a chaperone to promote voltage-gated calcium channel assembly

Release date: Feb. 18, 2026
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 9zz6

Stanton M, Singal B, Biswal M, Agarwal M, Scheuing CE, Vargas GD, Gao A, Gifford CA, Pleiner T

bioRxiv (2026) [ Pubmed: 41648177 DOI: doi:10.64898/2026.01.14.699575 ]

EMD-70278

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C3 reconstruction of the thermophilic bacteriophage P74-26 Neck

Release date: Jan. 28, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9oab
Q-score: 0.584

Sedivy EL, Agnello E, Hobaugh JE, Ahsan R, Song K, Xu C, Kelch BA

J Mol Biol (2026) 438 pp. 169641-169641 [ DOI: doi:10.1016/j.jmb.2026.169641 Pubmed: 41544933 ]

EMD-72288

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dsDNA in the central channel of the bacteriophage P74-26 neck

Release date: Jan. 28, 2026
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 9q7a
Q-score: 0.243

Sedivy EL, Agnello E, Hobaugh JE, Ahsan R, Song K, Xu C, Kelch BA

J Mol Biol (2026) 438 pp. 169641-169641 [ DOI: doi:10.1016/j.jmb.2026.169641 Pubmed: 41544933 ]

EMD-45405

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Yersinia entomophaga holotoxin complex refined using C5 symmetry

Release date: Jan. 21, 2026
Resolution: 4.0 Å
EM Method: Single-particle

Low YS, Landsberg MJ

To Be Published

Sort by: Download

Showing 1 - 10 of 208. Page 1 of 21

Display:

Statistics

Download

Select database:

EMDB [208]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [90]
Escherichia coli [34]
Thermotoga maritima [18]
Synthetic construct [15]
Mus musculus [12]
Rattus norvegicus [11]
Arabidopsis thaliana [9]
Entamoeba histolytica [6]
Influenza a virus [5]
Methanosarcina mazei [4]
Escherichia coli [4]
Pseudomonas virus prd1 [3]
Saccharomyces cerevisiae [3]
Chaetomium thermophilum [3]
Yersinia entomophaga [3]
Lama glama [3]
Thermus virus p74-26 [2]
Caenorhabditis elegans [2]
Vibrio alginolyticus [2]
Hafnia alvei [1]
Adeno-associated dependoparvovirus a [1]
Rotavirus a [1]
Haloarcula hispanica icosahedral virus 2 [1]
Methanothermobacter marburgensis [1]
Candidatus saccharibacteria bacterium [1]
Bacteroidales bacterium [1]
Methanocaldococcus jannaschii [1]
Methanosarcina thermophila [1]
Thermus thermophilus [1]
Marchantia polymorpha [1]
Svunavirus gbsv1 [1]
Maackia amurensis [1]
Pomacea canaliculata [1]
Komagataella pastoris [1]
Platynereis dumerilii [1]
Fusarium vanettenii [1]
Vibrio cholerae [1]
Adeno-associated dependoparvovirus b [1]
Parus major [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Burger J [30]
Mielke T [30]
Spahn CMT [30]
Park J [29]
Asher WB [25]
Clarke OB [25]
Conigrave AD [25]
Eng E [25]
Fan QR [25]
Frangaj A [25]
Grassucci R [25]
Grasucci R [25]
Hendrickson WA [25]
Hu G [25]
Hu GB [25]
Javitch JA [25]
Lin X [25]
Lu G [25]
Lu Z [25]
Manning JJ [25]
Mendez J [25]
Wang L [25]
Ye J [25]
Zhang Z [25]
Zuo H [25]
Hou J [19]
Kossiakoff AA [19]
Erramilli SK [18]
Li T [18]
Nosol K [18]
Perozo E [18]
Pietrzak-lichwa K [18]
Schmandt N [18]
Tokarz P [18]
Zhao M [18]
Dabrowski M [16]
Diebolder CA [16]
Fluegel T [16]
Flugel T [16]
Guillen Schlippe Yv [16]
Schacherl M [16]
Schroeer B [16]
Sprink T [16]
Unbehaun A [16]
Balke A [14]
Lauer S [14]
Lauer SM [14]
Nikolay R [14]
Qin B [14]
Scheerer P [14]
Selbach M [14]
Vieira-vieira CH [14]
Nayak AR [12]
Temiakov D [12]
Zamudio-ochoa A [12]
Herbine K [11]
Chang A [9]
Dirksen RT [9]
Dridi H [9]
Groom L [9]
Kang J [9]
Leigh J [9]
Liu Y [9]
Luna-figueroa E [9]
Marks AR [9]
Miotto MC [9]
Reiken S [9]
Sobolevsky AI [9]
Tchagou C [9]
Weninger G [9]
Wronska A [9]
Yuan Q [9]
Zhao N [9]
Herbine KH [8]
Kuehlbrandt W [8]
Kuhlbrandt W [8]
Braun HP [7]
Dreimann M [7]
Klusch N [7]
Rugen N [7]
Senkler J [7]
Yelshanskaya MV [7]
Gangwar SP [6]
Gourinath S [6]
Grant T [6]
Grigorieff N [6]
Jones DR [6]
Kaushal PS [6]
Korman A [6]
Mishra S [6]
Sharma S [6]
Yen LY [6]
Abu-shmais A [5]
Andrews S [5]
Diaz-avalos R [5]
Furukawa H [5]
Kanekiyo M [5]
Karakas E [5]
Malla T [5]
Malla TN [5]

Author by ORCID

Mielke T [30]
Spahn CMT [30]
Javitch JA [25]
Asher WB [25]
Mendez J [25]
Lu Z [25]
Frangaj A [25]
Manning JJ [25]
Conigrave AD [25]
Eng E [25]
Zuo H [25]
Fan QR [25]
Hendrickson WA [25]
Hu GB [25]
Ye J [25]
Diebolder CA [16]
Guillen Schlippe Yv [16]
Schacherl M [16]
Dabrowski M [16]
Flugel T [16]
Scheerer P [14]
Vieira-vieira CH [14]
Balke A [14]
Qin B [14]
Burger J [14]
Selbach M [14]
Lauer SM [14]
Nikolay R [14]
Temiakov D [12]
Sobolevsky AI [9]
Kuhlbrandt W [8]
Senkler J [7]
Braun HP [7]
Rugen N [7]
Klusch N [7]
Dreimann M [7]
Kaushal PS [6]
Jones DR [6]
Grigorieff N [6]
Grant T [6]
Korman A [6]
Gangwar SP [6]
Tajima N [5]
Furukawa H [5]
Nayak AR [5]
D'arcy S [4]
Venugopal H [4]
Vervoort SJ [4]
Hinde E [4]
Gurzau AD [4]
Hardwick SW [4]
Ryu JK [4]
Davidovich C [4]
Koronakis V [4]
Yousef J [4]
Blewitt ME [4]
Greene NP [4]
Keenan CR [4]
Baldoni PL [4]
Allan RS [4]
Tan W [4]
Shakeel S [4]
Dagley LF [4]
Leis A [4]
Szewczyk P [4]
Symmons MF [4]
Corso LD [4]
Lee J [4]
Park J [4]
Reyes N [3]
Medlyn MJ [3]
Sillamaa S [3]
Backovic M [3]
Han Y [3]
Chen Z [3]
Pardon E [3]
Svenda M [3]
Steyaert J [3]
Reddy HK [3]
Perez C [3]
Chen B [3]
Nadezhdin KD [3]
Kramer DA [3]
Carroni M [3]
Neuberger A [3]
Singla A [3]
Rey FA [3]
Canul-tec JC [3]
Chen WC [3]
Sedman J [3]
Burstein E [3]
Marmorstein R [3]
Boesch DJ [3]
Cajiao AB [3]
Baek Y [2]
Martelli A [2]
Stokes DL [2]
Yue WW [2]
Viscardi MJ [2]
Yu X [2]

Journal

Software

Microscope

Electron Source

Film or detector model

External links