Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Filter By

Current Database

  • EMDB [63]

Current status

  • REL [63]

Sample type

  • Complex [56]
  • Protein [49]
  • Ligand [28]
  • RNA [15]
  • Virus [9]
  • DNA [3]
  • Cell [1]

Organism

  • Homo sapiens [21]
  • Escherichia coli [14]
  • Human immunodeficiency virus 1 [9]
  • Chlamydomonas reinhardtii [7]
  • Influenza a virus [4]
  • Saccharomyces cerevisiae [4]
  • Zaire ebolavirus [3]
  • Tick-borne encephalitis virus [3]
  • Human cytomegalovirus [2]
  • Synthetic construct [2]
  • Rhinovirus c [2]
  • Toxoplasma gondii [2]
  • Escherichia coli [2]
  • Mus musculus [1]
  • Roseiflexus castenholzii [1]
  • Plasmodium falciparum [1]
  • Deformed wing virus [1]
  • Escherichia phage ms2 [1]
  • Thermus virus p74-26 [1]
  • Saccharomyces cerevisiae [1]
  • Eisenia fetida [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [63]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [30]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [5]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [13]
  • 500-1000 kDa [1]
  • 1-2 MDa [5]
  • 2-5 MDa [10]
  • 5-10 MDa [3]
  • > 10 MDa [5]

Release Date

  • 2025 [1]
  • 2021 [4]
  • 2020 [2]
  • 2019 [8]
  • 2018 [7]
  • 2017 [23]
  • 2016 [18]

Author by name

  • Cottrell CA [10]
  • Grigorieff N [10]
  • Pallesen J [10]
  • Ward AB [10]
  • De Val N [10]
  • Brown A [9]
  • Lyumkis D [9]
  • Ma M [9]
  • Wang Z [9]
  • Zhang R [9]
  • Liu Y [8]
  • Copps J [7]
  • Cupo A [7]
  • Demo G [7]
  • Dutcher SK [7]
  • Moore JP [7]
  • Ozorowski G [7]
  • Pugach P [7]
  • Rademacher G [7]
  • Stanfield RL [7]
  • Stoyanova M [7]
  • Torres JL [7]
  • Wilson IA [7]
  • Bock LV [6]
  • Ficner R [6]
  • Fischer N [6]
  • Grubmuller H [6]
  • Konevega AL [6]
  • Korostelev AA [6]
  • Maracci C [6]
  • Neumann P [6]
  • Paleskava A [6]
  • Rodnina MV [6]
  • Schroder GF [6]
  • Stark H [6]
  • Diaz-avalos R [5]
  • Caradonna T [4]
  • Do KT [4]
  • Fuzik T [4]
  • Harrison SC [4]
  • Jenni S [4]
  • Pan J [4]
  • Plevka P [4]
  • Raymond DD [4]
  • Schmidt AG [4]
  • Andersen KG [3]
  • Chiu W [3]
  • Chou CK [3]
  • Crowe JE [3]
  • Fan G [3]
  • Fan GZ [3]
  • Feng Q [3]
  • Flyak AI [3]
  • Formanova P [3]
  • Foulds CE [3]
  • Fusco ML [3]
  • Hastie KM [3]
  • Hung MC [3]
  • Loveland AB [3]
  • Ludtke S [3]
  • Ludtke SJ [3]
  • Murin CD [3]
  • Niedrig M [3]
  • Nudler E [3]
  • O Malley Bw [3]
  • Omalley BW [3]
  • Pintilie G [3]
  • Pintilie GD [3]
  • Rasouly A [3]
  • Ruzek D [3]
  • Saphire EO [3]
  • Schmid MF [3]
  • Serysheva I [3]
  • Shen H [3]
  • Svetlov V [3]
  • Svidritskiy E [3]
  • Turner HL [3]
  • Vasilyev N [3]
  • Yi P [3]
  • Yoshii K [3]
  • Zeitlin L [3]
  • Aylett CHS [2]
  • Beatty WL [2]
  • Bochkov YA [2]
  • Che Y [2]
  • Chen Z [2]
  • Cheng DT [2]
  • Cheng DTH [2]
  • Chi X [2]
  • Craigie R [2]
  • Cui W [2]
  • Dalwadi U [2]
  • David Sibley L [2]
  • Dong MQ [2]
  • Dormitzer PR [2]
  • Fu W [2]
  • Fu Y [2]
  • Ghirlando R [2]
  • Grant T [2]
  • Han S [2]

Author by ORCID

  • Grigorieff N [10]
  • Pallesen J [10]
  • Brown A [9]
  • Stanfield RL [7]
  • Demo G [7]
  • Torres JL [7]
  • Paleskava A [6]
  • Fischer N [6]
  • Rodnina MV [6]
  • Korostelev AA [6]
  • Schroder GF [6]
  • Maracci C [6]
  • Bock LV [6]
  • Caradonna T [4]
  • Pan J [4]
  • Fuzik T [4]
  • Plevka P [4]
  • Andersen KG [3]
  • Loveland AB [3]
  • Yi P [3]
  • Crowe JE [3]
  • Saphire EO [3]
  • Ludtke SJ [3]
  • Cottrell CA [3]
  • Zeitlin L [3]
  • Flyak AI [3]
  • Nudler E [3]
  • Chiu W [3]
  • Schmid MF [3]
  • Rasouly A [3]
  • Hung MC [3]
  • Ruzek D [3]
  • Wang Z [3]
  • Foulds CE [3]
  • Ramlaul K [2]
  • Liu Y [2]
  • De Martin Garrido N [2]
  • Dalwadi U [2]
  • Hansen JM [2]
  • Han S [2]
  • Che Y [2]
  • Jiang W [2]
  • Fu Y [2]
  • Grant T [2]
  • Heim KP [2]
  • Fu W [2]
  • Trivedi M [2]
  • Dormitzer PR [2]
  • Yip CK [2]
  • Bochkov YA [2]
  • Setiaputra DT [2]
  • Zhang R [2]
  • Lu S [2]
  • Kursula I [1]
  • Zuber B [1]
  • Robinson CV [1]
  • Von Der Ecken J [1]
  • Xu XL [1]
  • Raunser S [1]
  • Schmidt C [1]
  • Lai M [1]
  • Xin YY [1]
  • Sun F [1]
  • Kelch BA [1]
  • Agnello E [1]
  • Kukulski W [1]
  • Dai X [1]
  • Fu YH [1]
  • Pospich S [1]
  • Jomaa A [1]
  • Pridal A [1]
  • Kong L [1]
  • Stone NP [1]
  • Leibundgut M [1]
  • Shu S [1]
  • Farnung L [1]
  • Elferich J [1]
  • Fibriansah G [1]
  • Mazhab-jafari MT [1]
  • Kumpula EP [1]
  • Rubinstein JL [1]
  • Blankenship RE [1]
  • Shi Y [1]
  • Paxton RJ [1]
  • Novacek J [1]
  • Ding W [1]
  • Lok SM [1]
  • Ooi JS [1]

Journal

  • NATURE [16]
  • NAT COMMUN [9]
  • CELL [7]
  • J MOL BIOL [6]
  • ELIFE [5]
  • PNAS [4]
  • MOL CELL [3]
  • NAT MICROBIOL [3]
  • EMBO REP [2]
  • J BIOL CHEM [2]
  • SCI ADV [2]
  • SCIENCE [2]
  • IUCRJ [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [44]
  • FREALIGN [16]
  • EMAN [10]
  • GCTF [10]
  • CTFFIND [8]
  • IMAGIC [4]
  • E2CTF.PY [3]
  • EMAN2 [3]
  • CRYOSPARC [2]
  • CTFFIND3 [2]
  • JSPR [2]
  • CISTEM [1]
  • FREALIGNX [1]
  • J3DR [1]
  • JALIGN [1]
  • JALINGN [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [52]
  • FEI POLARA 300 [3]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI SPIRIT [2]
  • FEI TECNAI F20 [1]
  • JEOL CRYO ARM 200 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [61]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [34]
  • FEI FALCON II 4K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [7]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • FEI EAGLE 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • UniProt [47]
  • PDBe-Kb [46]
  • PDB [40]
  • AlphaFold DB [34]
  • InterPro [34]
  • Pfam [34]
  • ChEBI [28]
  • ChEMBL [28]
  • Gene Ontology [28]
  • DrugBank [17]
  • Complex Portal [16]
  • CATH [10]
  • EMPIAR [7]
  • SCOP2 [3]
Sort by: Download
Showing 1 - 10 of 63. Page 1 of 7
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EMD-71068
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3D View
Reconstruction of the yeast 60S ribosomal subunit from CEMOVIS sections
Release date: July 9, 2025
Resolution: 3.5 Å
EM Method: Single-particle

Elferich J, Kaminek M, Kong L, Odriozola A, Kukulski W, Zuber B, Grigorieff N

IUCrJ (2025) 12 pp. 502-510 [ Pubmed: 40553549 DOI: doi:10.1107/S2052252525005196 ]

EMD-23869
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3D View
Cryo-EM structure of cortical microtubule from Toxoplasma gondii with TrxL2
Release date: June 2, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7miz
Q-score: 0.46

Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R

Nat Commun (2021) 12 pp. 3065-3065 [ DOI: doi:10.1038/s41467-021-23351-1 Pubmed: 34031406 ]

EMD-23870
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3D View
Cryo-EM structure of cortical microtubule from Toxoplasma gondii without TrxL2
Release date: June 2, 2021
Resolution: 3.4 Å
EM Method: Single-particle

Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R

Nat Commun (2021) 12 pp. 3065-3065 [ DOI: doi:10.1038/s41467-021-23351-1 Pubmed: 34031406 ]

EMD-22819
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3D View
HCMV postfusion gB in complex with SM5-1 Fab
Release date: March 17, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7kdd
Q-score: 0.506

Liu Y, Heim KP, Che Y, Chi X, Qiu X, Han S, Dormitzer PR, Yang X

Sci Adv (2021) 7 [ Pubmed: 33674318 DOI: doi:10.1126/sciadv.abf3178 ]

EMD-22828
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3D View
HCMV prefusion gB in complex with fusion inhibitor WAY-174865
Release date: March 17, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7kdp
Q-score: 0.467

Liu Y, Heim KP, Che Y, Chi X, Qiu X, Han S, Dormitzer PR, Yang X

Sci Adv (2021) 7 [ Pubmed: 33674318 DOI: doi:10.1126/sciadv.abf3178 ]

EMD-11816
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3D View
Pincer of the human TSC protein complex
Release date: Dec. 30, 2020
Resolution: 8.0 Å
EM Method: Single-particle

Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G

J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]

EMD-11817
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Barbed tail of the human TSC protein complex
Release date: Dec. 30, 2020
Resolution: 8.2 Å
EM Method: Single-particle

Ramlaul K, Fu W, Li H, de Martin Garrido N, He L, Trivedi M, Cui W, Aylett CHS, Wu G

J Mol Biol (2020) 433 pp. 166743-166743 [ Pubmed: 33307091 DOI: doi:10.1016/j.jmb.2020.166743 ]

EMD-20631
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3D View
Composite cryo-EM density map of the 48-nm repeat doublet microtubule from Chlamydomonas reinhardtii
Release date: Nov. 13, 2019
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6u42

Ma M, Stoyanova M, Rademacher G, Dutcher SK, Brown A, Zhang R

Cell (2019) 179 pp. 909-922.e12 [ DOI: doi:10.1016/j.cell.2019.09.030 Pubmed: 31668805 ]

EMD-20632
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Composite cryo-EM density map of half 1 of the 96-nm repeat of the doublet microtubule from wild-type Chlamydomonas reinhardtii
Release date: Nov. 13, 2019
Resolution: 3.6 Å
EM Method: Single-particle

Ma M, Stoyanova M, Rademacher G, Dutcher SK, Brown A, Zhang R

Cell (2019) 179 pp. 909-922.e12 [ DOI: doi:10.1016/j.cell.2019.09.030 Pubmed: 31668805 ]

EMD-20633
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3D View
Composite cryo-EM density map of half 2 of the 96-nm repeat of the doublet microtubule from wild-type Chlamydomonas reinhardtii
Release date: Nov. 13, 2019
Resolution: 3.57 Å
EM Method: Single-particle

Ma M, Stoyanova M, Rademacher G, Dutcher SK, Brown A, Zhang R

Cell (2019) 179 pp. 909-922.e12 [ DOI: doi:10.1016/j.cell.2019.09.030 Pubmed: 31668805 ]

Sort by: Download
Showing 1 - 10 of 63. Page 1 of 7
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [63]

Current status

  • REL [63]

Sample type

  • Complex [56]
  • Protein [49]
  • Ligand [28]
  • RNA [15]
  • Virus [9]
  • DNA [3]
  • Cell [1]

Organism

  • Homo sapiens [21]
  • Escherichia coli [14]
  • Human immunodeficiency virus 1 [9]
  • Chlamydomonas reinhardtii [7]
  • Influenza a virus [4]
  • Saccharomyces cerevisiae [4]
  • Zaire ebolavirus [3]
  • Tick-borne encephalitis virus [3]
  • Human cytomegalovirus [2]
  • Synthetic construct [2]
  • Rhinovirus c [2]
  • Toxoplasma gondii [2]
  • Escherichia coli [2]
  • Mus musculus [1]
  • Roseiflexus castenholzii [1]
  • Plasmodium falciparum [1]
  • Deformed wing virus [1]
  • Escherichia phage ms2 [1]
  • Thermus virus p74-26 [1]
  • Saccharomyces cerevisiae [1]
  • Eisenia fetida [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [63]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [30]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [5]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [13]
  • 500-1000 kDa [1]
  • 1-2 MDa [5]
  • 2-5 MDa [10]
  • 5-10 MDa [3]
  • > 10 MDa [5]

Release Date

  • 2025 [1]
  • 2021 [4]
  • 2020 [2]
  • 2019 [8]
  • 2018 [7]
  • 2017 [23]
  • 2016 [18]

Author by name

  • Cottrell CA [10]
  • Grigorieff N [10]
  • Pallesen J [10]
  • Ward AB [10]
  • De Val N [10]
  • Brown A [9]
  • Lyumkis D [9]
  • Ma M [9]
  • Wang Z [9]
  • Zhang R [9]
  • Liu Y [8]
  • Copps J [7]
  • Cupo A [7]
  • Demo G [7]
  • Dutcher SK [7]
  • Moore JP [7]
  • Ozorowski G [7]
  • Pugach P [7]
  • Rademacher G [7]
  • Stanfield RL [7]
  • Stoyanova M [7]
  • Torres JL [7]
  • Wilson IA [7]
  • Bock LV [6]
  • Ficner R [6]
  • Fischer N [6]
  • Grubmuller H [6]
  • Konevega AL [6]
  • Korostelev AA [6]
  • Maracci C [6]
  • Neumann P [6]
  • Paleskava A [6]
  • Rodnina MV [6]
  • Schroder GF [6]
  • Stark H [6]
  • Diaz-avalos R [5]
  • Caradonna T [4]
  • Do KT [4]
  • Fuzik T [4]
  • Harrison SC [4]
  • Jenni S [4]
  • Pan J [4]
  • Plevka P [4]
  • Raymond DD [4]
  • Schmidt AG [4]
  • Andersen KG [3]
  • Chiu W [3]
  • Chou CK [3]
  • Crowe JE [3]
  • Fan G [3]
  • Fan GZ [3]
  • Feng Q [3]
  • Flyak AI [3]
  • Formanova P [3]
  • Foulds CE [3]
  • Fusco ML [3]
  • Hastie KM [3]
  • Hung MC [3]
  • Loveland AB [3]
  • Ludtke S [3]
  • Ludtke SJ [3]
  • Murin CD [3]
  • Niedrig M [3]
  • Nudler E [3]
  • O Malley Bw [3]
  • Omalley BW [3]
  • Pintilie G [3]
  • Pintilie GD [3]
  • Rasouly A [3]
  • Ruzek D [3]
  • Saphire EO [3]
  • Schmid MF [3]
  • Serysheva I [3]
  • Shen H [3]
  • Svetlov V [3]
  • Svidritskiy E [3]
  • Turner HL [3]
  • Vasilyev N [3]
  • Yi P [3]
  • Yoshii K [3]
  • Zeitlin L [3]
  • Aylett CHS [2]
  • Beatty WL [2]
  • Bochkov YA [2]
  • Che Y [2]
  • Chen Z [2]
  • Cheng DT [2]
  • Cheng DTH [2]
  • Chi X [2]
  • Craigie R [2]
  • Cui W [2]
  • Dalwadi U [2]
  • David Sibley L [2]
  • Dong MQ [2]
  • Dormitzer PR [2]
  • Fu W [2]
  • Fu Y [2]
  • Ghirlando R [2]
  • Grant T [2]
  • Han S [2]

Author by ORCID

  • Grigorieff N [10]
  • Pallesen J [10]
  • Brown A [9]
  • Stanfield RL [7]
  • Demo G [7]
  • Torres JL [7]
  • Paleskava A [6]
  • Fischer N [6]
  • Rodnina MV [6]
  • Korostelev AA [6]
  • Schroder GF [6]
  • Maracci C [6]
  • Bock LV [6]
  • Caradonna T [4]
  • Pan J [4]
  • Fuzik T [4]
  • Plevka P [4]
  • Andersen KG [3]
  • Loveland AB [3]
  • Yi P [3]
  • Crowe JE [3]
  • Saphire EO [3]
  • Ludtke SJ [3]
  • Cottrell CA [3]
  • Zeitlin L [3]
  • Flyak AI [3]
  • Nudler E [3]
  • Chiu W [3]
  • Schmid MF [3]
  • Rasouly A [3]
  • Hung MC [3]
  • Ruzek D [3]
  • Wang Z [3]
  • Foulds CE [3]
  • Ramlaul K [2]
  • Liu Y [2]
  • De Martin Garrido N [2]
  • Dalwadi U [2]
  • Hansen JM [2]
  • Han S [2]
  • Che Y [2]
  • Jiang W [2]
  • Fu Y [2]
  • Grant T [2]
  • Heim KP [2]
  • Fu W [2]
  • Trivedi M [2]
  • Dormitzer PR [2]
  • Yip CK [2]
  • Bochkov YA [2]
  • Setiaputra DT [2]
  • Zhang R [2]
  • Lu S [2]
  • Kursula I [1]
  • Zuber B [1]
  • Robinson CV [1]
  • Von Der Ecken J [1]
  • Xu XL [1]
  • Raunser S [1]
  • Schmidt C [1]
  • Lai M [1]
  • Xin YY [1]
  • Sun F [1]
  • Kelch BA [1]
  • Agnello E [1]
  • Kukulski W [1]
  • Dai X [1]
  • Fu YH [1]
  • Pospich S [1]
  • Jomaa A [1]
  • Pridal A [1]
  • Kong L [1]
  • Stone NP [1]
  • Leibundgut M [1]
  • Shu S [1]
  • Farnung L [1]
  • Elferich J [1]
  • Fibriansah G [1]
  • Mazhab-jafari MT [1]
  • Kumpula EP [1]
  • Rubinstein JL [1]
  • Blankenship RE [1]
  • Shi Y [1]
  • Paxton RJ [1]
  • Novacek J [1]
  • Ding W [1]
  • Lok SM [1]
  • Ooi JS [1]

Journal

  • NATURE [16]
  • NAT COMMUN [9]
  • CELL [7]
  • J MOL BIOL [6]
  • ELIFE [5]
  • PNAS [4]
  • MOL CELL [3]
  • NAT MICROBIOL [3]
  • EMBO REP [2]
  • J BIOL CHEM [2]
  • SCI ADV [2]
  • SCIENCE [2]
  • IUCRJ [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [44]
  • FREALIGN [16]
  • EMAN [10]
  • GCTF [10]
  • CTFFIND [8]
  • IMAGIC [4]
  • E2CTF.PY [3]
  • EMAN2 [3]
  • CRYOSPARC [2]
  • CTFFIND3 [2]
  • JSPR [2]
  • CISTEM [1]
  • FREALIGNX [1]
  • J3DR [1]
  • JALIGN [1]
  • JALINGN [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [52]
  • FEI POLARA 300 [3]
  • FEI TALOS ARCTICA [3]
  • FEI TECNAI SPIRIT [2]
  • FEI TECNAI F20 [1]
  • JEOL CRYO ARM 200 [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [61]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [34]
  • FEI FALCON II 4K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [7]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • FEI EAGLE 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • UniProt [47]
  • PDBe-Kb [46]
  • PDB [40]
  • AlphaFold DB [34]
  • InterPro [34]
  • Pfam [34]
  • ChEBI [28]
  • ChEMBL [28]
  • Gene Ontology [28]
  • DrugBank [17]
  • Complex Portal [16]
  • CATH [10]
  • EMPIAR [7]
  • SCOP2 [3]