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Current Database

  • EMDB [40]

Current status

  • REL [40]

Sample type

  • Cellular component [18]
  • Cell [9]
  • Complex [7]
  • Virus [6]
  • Protein [3]
  • DNA [1]

Organism

  • Danio rerio [12]
  • Mycobacterium phage bxb1 [6]
  • Neospora caninum [5]
  • Homo sapiens [4]
  • Saccharomyces cerevisiae [3]
  • Coxiella burnetii [3]
  • Chlamydomonas reinhardtii [2]
  • Anguilla rostrata [2]
  • Synthetic construct [1]
  • Trypanosoma brucei [1]
  • Bos taurus [1]

EM Method

  • Subtomogram averaging [39]
  • Single-particle [1]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [17]
  • ≥ 30Å [14]

Model molecular weight

  • 100-250 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [5]
  • 2024 [8]
  • 2023 [22]
  • 2022 [3]
  • 2019 [1]

Author by name

  • Kikkawa M [13]
  • Morikawa M [12]
  • Yamaguchi H [12]
  • Nicastro D [7]
  • Conway JF [6]
  • Freeman KG [6]
  • Hatfull GF [6]
  • Ho MC [6]
  • Huet A [6]
  • Jacobs-sera D [6]
  • Lowary TL [6]
  • Macale LS [6]
  • Mondal S [6]
  • Narsico JT [6]
  • Ortiz V [6]
  • Park D [6]
  • Perez RJ [6]
  • Podgorski J [6]
  • Silva BH [6]
  • White SJ [6]
  • Cai K [5]
  • Gui L [5]
  • O Shaughnessy Wj [5]
  • Reese ML [5]
  • Reetz E [5]
  • Beare PA [3]
  • Ghosal D [3]
  • Jensen GJ [3]
  • Kaplan M [3]
  • Kim KW [3]
  • Krzymowski E [3]
  • Larson CL [3]
  • Przemyslaw D [3]
  • Shepherd DC [3]
  • Vankadari N [3]
  • Alvarez Viar G [2]
  • Bolognini D [2]
  • Capasso P [2]
  • Chang YW [2]
  • Chen SF [2]
  • Fu G [2]
  • Gorbea Colon Jj [2]
  • Hable WE [2]
  • Heinzen RA [2]
  • Kim HJ [2]
  • Klena N [2]
  • Martino F [2]
  • Murakami K [2]
  • Nievergelt AP [2]
  • Oliveira K [2]
  • Palao 3Rd L [2]
  • Palao Iii L [2]
  • Pigino G [2]
  • Schrad JR [2]
  • Snyder L [2]
  • Tayar AM [2]
  • Tsai KL [2]
  • Acharya V [1]
  • Ahn G [1]
  • Akamatsu M [1]
  • Akey CW [1]
  • Amorim MJ [1]
  • Atanasov I [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Brown A [1]
  • Bui KH [1]
  • Burgoyne T [1]
  • Carr A [1]
  • Chait BT [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Closson JD [1]
  • Croft JT [1]
  • Davies KM [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Drubin DG [1]
  • Duran DC [1]
  • Echeverria I [1]
  • Fang F [1]
  • Favor A [1]
  • Fernandez-martinez J [1]
  • Fischer K [1]
  • Fukuda Y [1]
  • Garcia JA [1]
  • Gardner KH [1]
  • Gui M [1]
  • Gumbart JC [1]
  • Hatazawa S [1]
  • Heinzen AH [1]
  • Hernandez C [1]
  • Hill JM [1]
  • Hill KL [1]
  • Holt LJ [1]
  • Hoog JL [1]
  • Huang B [1]

Author by ORCID

  • Kikkawa M [13]
  • Yamaguchi H [12]
  • Nicastro D [7]
  • Reese ML [5]
  • Gui L [5]
  • O'shaughnessy WJ [5]
  • Marcelino LP [1]
  • Makroczyova J [1]
  • Kurumizaka H [1]
  • Gui M [1]
  • Brown A [1]
  • Zhang M [1]
  • Vale-costa S [1]
  • O'riain A [1]
  • Nagati JS [1]
  • Garcia JA [1]
  • Zabeo D [1]
  • Isiorho EA [1]
  • Chlanda P [1]
  • Burgoyne T [1]
  • Gardner KH [1]
  • Croft JT [1]
  • Wachsmuth-melm M [1]
  • Xu X [1]
  • Hoog JL [1]

Journal

  • ELIFE [13]
  • CELL [7]
  • NAT COMMUN [6]
  • TO BE PUBLISHED [3]
  • CURR BIOL [2]
  • MOL BIOL CELL [2]
  • MOL CELL [2]
  • PNAS [2]
  • BIORXIV [1]
  • DEV CELL [1]
  • GENES CELLS [1]
  • NATURE [1]

Software

  • IMOD [17]
  • PEET [16]
  • EMAN2 [8]
  • CRYOSPARC [1]
  • DYNAMO [1]
  • PYTOM [1]
  • RELION [1]
  • UCSF CHIMERAX [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS KRIOS [15]
  • FEI POLARA 300 [3]
  • FEI TITAN [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [40]

Film or detector model

  • GATAN K3 6K X 4K [22]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • EMPIAR [3]
  • PDB [3]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 40. Page 1 of 4
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EMD-70685
Download Map
3D View
Two Component Protein Nano-Particle T 3 . De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
CryoEM
Release date: May 20, 2026
Resolution: 31.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9op9
Q-score: 0.058
Similar entry percentile: 100%

Wang S, Xie Y, Chmielewski D, Weidle C, Shu T, Ahn G, Kibler RD, Hernandez C, Chen W, Duran DC, Carr A, Bera AK, Lee S, Decarreau J, Kang A, Brackenbrough E, Joyce E, Wu K, Borst AJ, Favor A, Huang B, DiMaio F, Holt LJ, Baker D

Nature (2026) 655 pp. 251-258 [ DOI: doi:10.1038/s41586-026-10464-0 Pubmed: 42162421 ]

EMD-51790
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3D View
Subtomogram average of intracellular influenza A virus hemagglutinin subtype H1
CryoEM
Release date: Oct. 29, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Wachsmuth-Melm M, Peterl S, O'Riain A, Makroczyova J, Fischer K, Krischuns T, Vale-Costa S, Amorim MJ, Chlanda P

Nat Commun (2025) 16 pp. 9394-9394 [ Pubmed: 41130956 DOI: doi:10.1038/s41467-025-65117-z ]

EMD-70443
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3D View
Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
CryoEM
Release date: June 11, 2025
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9ofu
Q-score: 0.366
Similar entry percentile: 41%

Closson JD, Xu X, Zhang M, Tiyani TT, Marcelino LP, Isiorho EA, Nagati JS, Garcia JA, Gardner KH

PNAS (2026) 123 pp. e2514042123-e2514042123 [ DOI: doi:10.1073/pnas.2514042123 Pubmed: 42048441 ]

EMD-63145
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Subtomogram average of the HeLa nucleosome for mapping back
CryoEM
Release date: April 30, 2025
Resolution: 16.0 Å
EM Method: Subtomogram averaging

Hatazawa S, Fukuda Y, Kobayashi Y, Negishi L, Kikkawa M, Takizawa Y, Kurumizaka H

Genes Cells (2025) 30 pp. e70019-e70019 [ Pubmed: 40223781 DOI: doi:10.1111/gtc.70019 ]

EMD-45870
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3D View
Ciliary 96-nm repeat unit from active and EHNA-inhibited sperm cells of the American eel Anguilla rostrata
CryoEM
Release date: March 5, 2025
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Schrad JR, Fu G, Hable WE, Tayar AM, Oliveira K, Nicastro D

Mol Biol Cell (2025) 36 pp. ar15-ar15 [ Pubmed: 39661459 DOI: doi:10.1091/mbc.E24-08-0351 ]

EMD-45872
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Ciliary 96-nm repeat unit from EHNA-inhibited sperm cells of the American eel Anguilla rostrata
CryoEM
Release date: March 5, 2025
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Schrad JR, Fu G, Hable WE, Tayar AM, Oliveira K, Nicastro D

Mol Biol Cell (2025) 36 pp. ar15-ar15 [ Pubmed: 39661459 DOI: doi:10.1091/mbc.E24-08-0351 ]

EMD-50565
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96nm repeat of the axonemal doublets from the tubulin glycylation depleted ttll3 strain from C.reinhardtii
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50569
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96nm repeat of the axonemal doublets of the tpg1 strain from C.reinhardtii incubated with polyE antiobodies
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-46702
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3D View
Raw data
EMPIAR-12238
Subtomogram averaging of Bxb1 phage capsid DNA-filled during the infection state
CryoEM
Release date: Sept. 18, 2024
Resolution: 11.65 Å
EM Method: Subtomogram averaging

Freeman KG, Mondal S, Macale LS, Podgorski J, White SJ, Silva BH, Ortiz V, Huet A, Perez RJ, Narsico JT, Ho MC, Jacobs-Sera D, Lowary TL, Conway JF, Park D, Hatfull GF

Cell (2025) 188 pp. 2925-2942.e17 [ DOI: doi:10.1016/j.cell.2025.03.027 Pubmed: 40239650 ]

EMD-46703
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Subtomogram averaging of Bxb1 phage tail tube DNA-filled during the infection state
CryoEM
Release date: Sept. 18, 2024
Resolution: 7.0 Å
EM Method: Subtomogram averaging

Freeman KG, Mondal S, Macale LS, Podgorski J, White SJ, Silva BH, Ortiz V, Huet A, Perez RJ, Narsico JT, Ho MC, Jacobs-Sera D, Lowary TL, Conway JF, Park D, Hatfull GF

Cell (2025) 188 pp. 2925-2942.e17 [ DOI: doi:10.1016/j.cell.2025.03.027 Pubmed: 40239650 ]

Sort by: Download
Showing 1 - 10 of 40. Page 1 of 4
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [40]

Current status

  • REL [40]

Sample type

  • Cellular component [18]
  • Cell [9]
  • Complex [7]
  • Virus [6]
  • Protein [3]
  • DNA [1]

Organism

  • Danio rerio [12]
  • Mycobacterium phage bxb1 [6]
  • Neospora caninum [5]
  • Homo sapiens [4]
  • Saccharomyces cerevisiae [3]
  • Coxiella burnetii [3]
  • Chlamydomonas reinhardtii [2]
  • Anguilla rostrata [2]
  • Synthetic construct [1]
  • Trypanosoma brucei [1]
  • Bos taurus [1]

EM Method

  • Subtomogram averaging [39]
  • Single-particle [1]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [17]
  • ≥ 30Å [14]

Model molecular weight

  • 100-250 kDa [1]
  • 5-10 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [5]
  • 2024 [8]
  • 2023 [22]
  • 2022 [3]
  • 2019 [1]

Author by name

  • Kikkawa M [13]
  • Morikawa M [12]
  • Yamaguchi H [12]
  • Nicastro D [7]
  • Conway JF [6]
  • Freeman KG [6]
  • Hatfull GF [6]
  • Ho MC [6]
  • Huet A [6]
  • Jacobs-sera D [6]
  • Lowary TL [6]
  • Macale LS [6]
  • Mondal S [6]
  • Narsico JT [6]
  • Ortiz V [6]
  • Park D [6]
  • Perez RJ [6]
  • Podgorski J [6]
  • Silva BH [6]
  • White SJ [6]
  • Cai K [5]
  • Gui L [5]
  • O Shaughnessy Wj [5]
  • Reese ML [5]
  • Reetz E [5]
  • Beare PA [3]
  • Ghosal D [3]
  • Jensen GJ [3]
  • Kaplan M [3]
  • Kim KW [3]
  • Krzymowski E [3]
  • Larson CL [3]
  • Przemyslaw D [3]
  • Shepherd DC [3]
  • Vankadari N [3]
  • Alvarez Viar G [2]
  • Bolognini D [2]
  • Capasso P [2]
  • Chang YW [2]
  • Chen SF [2]
  • Fu G [2]
  • Gorbea Colon Jj [2]
  • Hable WE [2]
  • Heinzen RA [2]
  • Kim HJ [2]
  • Klena N [2]
  • Martino F [2]
  • Murakami K [2]
  • Nievergelt AP [2]
  • Oliveira K [2]
  • Palao 3Rd L [2]
  • Palao Iii L [2]
  • Pigino G [2]
  • Schrad JR [2]
  • Snyder L [2]
  • Tayar AM [2]
  • Tsai KL [2]
  • Acharya V [1]
  • Ahn G [1]
  • Akamatsu M [1]
  • Akey CW [1]
  • Amorim MJ [1]
  • Atanasov I [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Brown A [1]
  • Bui KH [1]
  • Burgoyne T [1]
  • Carr A [1]
  • Chait BT [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Closson JD [1]
  • Croft JT [1]
  • Davies KM [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Drubin DG [1]
  • Duran DC [1]
  • Echeverria I [1]
  • Fang F [1]
  • Favor A [1]
  • Fernandez-martinez J [1]
  • Fischer K [1]
  • Fukuda Y [1]
  • Garcia JA [1]
  • Gardner KH [1]
  • Gui M [1]
  • Gumbart JC [1]
  • Hatazawa S [1]
  • Heinzen AH [1]
  • Hernandez C [1]
  • Hill JM [1]
  • Hill KL [1]
  • Holt LJ [1]
  • Hoog JL [1]
  • Huang B [1]

Author by ORCID

  • Kikkawa M [13]
  • Yamaguchi H [12]
  • Nicastro D [7]
  • Reese ML [5]
  • Gui L [5]
  • O'shaughnessy WJ [5]
  • Marcelino LP [1]
  • Makroczyova J [1]
  • Kurumizaka H [1]
  • Gui M [1]
  • Brown A [1]
  • Zhang M [1]
  • Vale-costa S [1]
  • O'riain A [1]
  • Nagati JS [1]
  • Garcia JA [1]
  • Zabeo D [1]
  • Isiorho EA [1]
  • Chlanda P [1]
  • Burgoyne T [1]
  • Gardner KH [1]
  • Croft JT [1]
  • Wachsmuth-melm M [1]
  • Xu X [1]
  • Hoog JL [1]

Journal

  • ELIFE [13]
  • CELL [7]
  • NAT COMMUN [6]
  • TO BE PUBLISHED [3]
  • CURR BIOL [2]
  • MOL BIOL CELL [2]
  • MOL CELL [2]
  • PNAS [2]
  • BIORXIV [1]
  • DEV CELL [1]
  • GENES CELLS [1]
  • NATURE [1]

Software

  • IMOD [17]
  • PEET [16]
  • EMAN2 [8]
  • CRYOSPARC [1]
  • DYNAMO [1]
  • PYTOM [1]
  • RELION [1]
  • UCSF CHIMERAX [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS KRIOS [15]
  • FEI POLARA 300 [3]
  • FEI TITAN [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [40]

Film or detector model

  • GATAN K3 6K X 4K [22]
  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • EMPIAR [3]
  • PDB [3]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]
  • SCOP2 [1]