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grant_code:"MCB-2048095"

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • DNA [6]
  • Ligand [6]
  • Protein [6]
  • RNA [3]

Organism

  • Synthetic construct [4]
  • Escherichia coli [3]
  • Mouse mammary tumor virus [2]
  • Streptomyces griseus [1]
  • Visna-maedi virus [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [2]

Release Date

  • 2023 [3]
  • 2022 [3]

Author by name

  • Lyumkis D [6]
  • Shan Z [4]
  • Ballandras-colas A [3]
  • Benner SA [3]
  • Cherepanov P [3]
  • Chong J [3]
  • Engelman AN [3]
  • Hoshika S [3]
  • Li W [3]
  • Oh J [3]
  • Wang D [3]
  • Xu J [3]
  • Aiyer S [2]
  • Grawenhoff J [2]
  • Jozwik I [2]
  • Jozwik IK [2]
  • Wong D [2]
  • Zhang DW [2]
  • Bedwell GJ [1]
  • Chivukula V [1]
  • Cook NJ [1]
  • Fadel HJ [1]
  • Griffiths DJ [1]
  • Gruszka DT [1]
  • Mclean RK [1]
  • Nans A [1]
  • Poeschla EM [1]
  • Pye VE [1]
  • Singh PK [1]
  • Taylor IA [1]
  • Vargas J [1]
  • Yardimci H [1]

Author by ORCID

  • Lyumkis D [6]
  • Shan Z [4]
  • Hoshika S [3]
  • Cherepanov P [3]
  • Wang D [3]
  • Oh J [3]
  • Engelman AN [3]
  • Ballandras-colas A [3]
  • Xu J [3]
  • Jozwik IK [2]
  • Grawenhoff J [2]
  • Yardimci H [1]
  • Chivukula V [1]
  • Griffiths DJ [1]
  • Pye VE [1]
  • Cook NJ [1]
  • Nans A [1]
  • Mclean RK [1]
  • Taylor IA [1]
  • Singh PK [1]
  • Poeschla EM [1]
  • Gruszka DT [1]

Journal

  • NAT COMMUN [4]
  • NUCLEIC ACIDS RES [2]

Software

  • CRYOSPARC [6]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • PDB [6]
  • UniProt [6]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • AlphaFold DB [3]
  • Complex Portal [3]
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EMD-40862
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E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8sy5
Q-score: 0.552

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ Pubmed: 38086811 DOI: doi:10.1038/s41467-023-43735-9 ]

EMD-40863
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E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8sy6
Q-score: 0.449

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ Pubmed: 38086811 DOI: doi:10.1038/s41467-023-43735-9 ]

EMD-40864
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E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8sy7
Q-score: 0.522

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ Pubmed: 38086811 DOI: doi:10.1038/s41467-023-43735-9 ]

EMD-26737
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3D View
Mouse mammary tumor virus strand transfer complex intasome
Release date: Aug. 24, 2022
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7usf
Q-score: 0.403

Jozwik IK, Li W, Zhang DW, Wong D, Grawenhoff J, Ballandras-Colas A, Aiyer S, Cherepanov P, Engelman AN, Lyumkis D

Nucleic Acids Res (2022) 50 pp. 8898-8918 [ Pubmed: 35947647 DOI: doi:10.1093/nar/gkac644 ]

EMD-26744
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Higher-order assembly of multiple MMTV strand transfer complex intasomes
Release date: Aug. 24, 2022
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ut1
Q-score: 0.39

Jozwik IK, Li W, Zhang DW, Wong D, Grawenhoff J, Ballandras-Colas A, Aiyer S, Cherepanov P, Engelman AN, Lyumkis D

Nucleic Acids Res (2022) 50 pp. 8898-8918 [ Pubmed: 35947647 DOI: doi:10.1093/nar/gkac644 ]

EMD-26322
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MVV cleaved synaptic complex CSC intasome at 3.4 A resolution
Release date: May 11, 2022
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 7u32
Q-score: 0.256

Ballandras-Colas A, Chivukula V, Gruszka DT, Shan Z, Singh PK, Pye VE, McLean RK, Bedwell GJ, Li W, Nans A, Cook NJ, Fadel HJ, Poeschla EM, Griffiths DJ, Vargas J, Taylor IA, Lyumkis D, Yardimci H, Engelman AN, Cherepanov P

Nat Commun (2022) 13 pp. 2416-2416 [ DOI: doi:10.1038/s41467-022-29928-8 Pubmed: 35504909 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • DNA [6]
  • Ligand [6]
  • Protein [6]
  • RNA [3]

Organism

  • Synthetic construct [4]
  • Escherichia coli [3]
  • Mouse mammary tumor virus [2]
  • Streptomyces griseus [1]
  • Visna-maedi virus [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 250-500 kDa [4]
  • 500-1000 kDa [2]

Release Date

  • 2023 [3]
  • 2022 [3]

Author by name

  • Lyumkis D [6]
  • Shan Z [4]
  • Ballandras-colas A [3]
  • Benner SA [3]
  • Cherepanov P [3]
  • Chong J [3]
  • Engelman AN [3]
  • Hoshika S [3]
  • Li W [3]
  • Oh J [3]
  • Wang D [3]
  • Xu J [3]
  • Aiyer S [2]
  • Grawenhoff J [2]
  • Jozwik I [2]
  • Jozwik IK [2]
  • Wong D [2]
  • Zhang DW [2]
  • Bedwell GJ [1]
  • Chivukula V [1]
  • Cook NJ [1]
  • Fadel HJ [1]
  • Griffiths DJ [1]
  • Gruszka DT [1]
  • Mclean RK [1]
  • Nans A [1]
  • Poeschla EM [1]
  • Pye VE [1]
  • Singh PK [1]
  • Taylor IA [1]
  • Vargas J [1]
  • Yardimci H [1]

Author by ORCID

  • Lyumkis D [6]
  • Shan Z [4]
  • Hoshika S [3]
  • Cherepanov P [3]
  • Wang D [3]
  • Oh J [3]
  • Engelman AN [3]
  • Ballandras-colas A [3]
  • Xu J [3]
  • Jozwik IK [2]
  • Grawenhoff J [2]
  • Yardimci H [1]
  • Chivukula V [1]
  • Griffiths DJ [1]
  • Pye VE [1]
  • Cook NJ [1]
  • Nans A [1]
  • Mclean RK [1]
  • Taylor IA [1]
  • Singh PK [1]
  • Poeschla EM [1]
  • Gruszka DT [1]

Journal

  • NAT COMMUN [4]
  • NUCLEIC ACIDS RES [2]

Software

  • CRYOSPARC [6]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • PDB [6]
  • UniProt [6]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • AlphaFold DB [3]
  • Complex Portal [3]