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grant_code:"JPMJPR12L9"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]

Organism

  • Homo sapiens [5]
  • Thermococcus kodakarensis [2]
  • Synthetic construct [2]
  • Thermococcus kodakarensis [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [2]

Release Date

  • 2021 [1]
  • 2020 [2]
  • 2019 [5]

Author by name

  • Mayanagi K [8]
  • Iwasaki K [7]
  • Miyazaki N [7]
  • Morikawa K [7]
  • Akashi S [5]
  • Nishimura Y [5]
  • Saikusa K [5]
  • Tsunaka Y [5]
  • Ishino S [3]
  • Ishino Y [3]
  • Oki K [3]
  • Shirai T [3]
  • Yamagami T [3]
  • Kohda D [2]
  • Adachi N [1]
  • Nagata M [1]
  • Numata T [1]

Author by ORCID

  • Iwasaki K [4]
  • Miyazaki N [4]
  • Nishimura Y [4]
  • Tsunaka Y [4]
  • Akashi S [4]
  • Saikusa K [4]
  • Ishino Y [1]
  • Adachi N [1]

Journal

  • GENES DEV [5]
  • SCI REP [4]
  • TO BE PUBLISHED [3]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [5]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [6]
  • FEI FALCON II 4K X 4K [2]

External links

  • PDB [2]
  • EMPIAR [1]
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EMD-30937
Download Map
3D View
Raw data
EMPIAR-11061
PolD-primase
Release date: April 28, 2021
Resolution: 7.1 Å
EM Method: Single-particle

Oki K, Yamagami T, Nagata M, Mayanagi K, Shirai T, Adachi N, Numata T, Ishino S, Ishino Y

Nucleic Acids Res (2021) 49 pp. 4599-4612 [ DOI: doi:10.1093/nar/gkab243 Pubmed: 33849056 ]

EMD-0723
Download Map
3D View
PolD-PCNA-DNA form A
Release date: Aug. 5, 2020
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 6knb

Mayanagi K, Ishino Y

To Be Published

EMD-0725
Download Map
3D View
PolD-PCNA-DNA form B
Release date: Aug. 5, 2020
Resolution: 9.3 Å
EM Method: Single-particle
Fitted PDBs: 6knc

Mayanagi K, Ishino Y

To Be Published

EMD-9639
Download Map
3D View
112-bp octasome/pAID complex
Release date: July 31, 2019
Resolution: 4.5 Å
EM Method: Single-particle

Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y

Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]

EMD-9640
Download Map
3D View
112-bp octasome/DNA complex
Release date: July 31, 2019
Resolution: 7.8 Å
EM Method: Single-particle

Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y

Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]

EMD-6937
Download Map
3D View
112-bp octasome/Mid-pAID complex
Release date: July 17, 2019
Resolution: 5.7 Å
EM Method: Single-particle

Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y

Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]

EMD-6938
Download Map
3D View
112-bp octasome/pAID complex
Release date: July 17, 2019
Resolution: 5.6 Å
EM Method: Single-particle

Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y

To Be Published

EMD-6939
Download Map
3D View
112-bp hexasome
Release date: July 17, 2019
Resolution: 7.5 Å
EM Method: Single-particle

Mayanagi K, Saikusa K, Miyazaki N, Akashi S, Iwasaki K, Nishimura Y, Morikawa K, Tsunaka Y

Sci Rep (2019) 9 pp. 10183-10183 [ DOI: doi:10.1038/s41598-019-46617-7 Pubmed: 31308435 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]

Organism

  • Homo sapiens [5]
  • Thermococcus kodakarensis [2]
  • Synthetic construct [2]
  • Thermococcus kodakarensis [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [2]

Release Date

  • 2021 [1]
  • 2020 [2]
  • 2019 [5]

Author by name

  • Mayanagi K [8]
  • Iwasaki K [7]
  • Miyazaki N [7]
  • Morikawa K [7]
  • Akashi S [5]
  • Nishimura Y [5]
  • Saikusa K [5]
  • Tsunaka Y [5]
  • Ishino S [3]
  • Ishino Y [3]
  • Oki K [3]
  • Shirai T [3]
  • Yamagami T [3]
  • Kohda D [2]
  • Adachi N [1]
  • Nagata M [1]
  • Numata T [1]

Author by ORCID

  • Iwasaki K [4]
  • Miyazaki N [4]
  • Nishimura Y [4]
  • Tsunaka Y [4]
  • Akashi S [4]
  • Saikusa K [4]
  • Ishino Y [1]
  • Adachi N [1]

Journal

  • GENES DEV [5]
  • SCI REP [4]
  • TO BE PUBLISHED [3]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [5]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [6]
  • FEI FALCON II 4K X 4K [2]

External links

  • PDB [2]
  • EMPIAR [1]