Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"JP21fk0108585"

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Ligand [3]
  • Protein [3]

Organism

  • Severe acute respiratory syndrome coronavirus [3]
  • Synthetic construct [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [3]

Release Date

  • 2025 [3]

Author by name

  • Emi A [3]
  • Fujiyoshi Y [3]
  • Kamegawa A [3]
  • Kawabata S [3]
  • Nakamura S [3]
  • Nishikawa K [3]
  • Nomura R [3]
  • Numoto N [3]
  • Sakaguchi S [3]
  • Suzuki H [3]
  • Suzuki Y [3]
  • Tanaka A [3]
  • Tanimura Y [3]

Author by ORCID

  • Numoto N [3]
  • Kamegawa A [3]
  • Tanaka A [3]
  • Fujiyoshi Y [3]
  • Nakamura S [3]
  • Suzuki Y [3]
  • Sakaguchi S [3]
  • Kawabata S [3]

Journal

  • PNAS [3]

Software

  • CTFFIND [3]
  • RELION [3]

Microscope

  • JEOL CRYO ARM 300 [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-39184
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike ectodomain HexaPro, Omicron BA.2 variant in complex with CeSPIACE
Release date: Jan. 15, 2025
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8ydx
Q-score: 0.237

Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y

PNAS (2025) 122 pp. e2413465122-e2413465122 [ DOI: doi:10.1073/pnas.2413465122 Pubmed: 39854234 ]

EMD-39185
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike ectodomain HexaPro, Omicron BA.5 variant in complex with CeSPIACE, class 1
Release date: Jan. 15, 2025
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8ydy
Q-score: 0.084

Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y

PNAS (2025) 122 pp. e2413465122-e2413465122 [ DOI: doi:10.1073/pnas.2413465122 Pubmed: 39854234 ]

EMD-39186
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike ectodomain HexaPro, Omicron BA.5 variant in complex with CeSPIACE, class 2
Release date: Jan. 15, 2025
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 8ydz
Q-score: 0.2

Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y

PNAS (2025) 122 pp. e2413465122-e2413465122 [ DOI: doi:10.1073/pnas.2413465122 Pubmed: 39854234 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Ligand [3]
  • Protein [3]

Organism

  • Severe acute respiratory syndrome coronavirus [3]
  • Synthetic construct [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [3]

Release Date

  • 2025 [3]

Author by name

  • Emi A [3]
  • Fujiyoshi Y [3]
  • Kamegawa A [3]
  • Kawabata S [3]
  • Nakamura S [3]
  • Nishikawa K [3]
  • Nomura R [3]
  • Numoto N [3]
  • Sakaguchi S [3]
  • Suzuki H [3]
  • Suzuki Y [3]
  • Tanaka A [3]
  • Tanimura Y [3]

Author by ORCID

  • Numoto N [3]
  • Kamegawa A [3]
  • Tanaka A [3]
  • Fujiyoshi Y [3]
  • Nakamura S [3]
  • Suzuki Y [3]
  • Sakaguchi S [3]
  • Kawabata S [3]

Journal

  • PNAS [3]

Software

  • CTFFIND [3]
  • RELION [3]

Microscope

  • JEOL CRYO ARM 300 [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]