Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"JP21am0101080"

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [7]
  • Ligand [2]
  • Protein [2]
  • Cell [1]

Organism

  • Mus musculus [8]
  • Homo sapiens [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [8]

Model molecular weight

  • 2-5 MDa [8]

Release Date

  • 2022 [8]

Author by name

  • Kikkawa M [8]
  • Kobayashi T [8]
  • Kodama M [8]
  • Kurebayashi N [8]
  • Murayama T [8]
  • Ogawa H [8]
  • Saito K [8]
  • Sakurai T [8]
  • Tsutsumi A [8]

Author by ORCID

  • Ogawa H [7]
  • Kikkawa M [7]
  • Sakurai T [7]
  • Murayama T [7]
  • Kurebayashi N [7]
  • Tsutsumi A [7]
  • Kobayashi T [7]

Journal

  • NAT COMMUN [8]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [8]

External links

  • PDB [8]
  • AlphaFold DB [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]
Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-32036
Download Map
3D View
Structure of recombinant RyR2 mutant K4593A EGTA dataset
Release date: Aug. 10, 2022
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7vmr
Q-score: 0.362

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-32037
Download Map
3D View
Structure of recombinant RyR2 mutant K4593A Ca2 dataset
Release date: Aug. 10, 2022
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7vms
Q-score: 0.299

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821- [ DOI: doi:10.1038/s41467-022-30429-x ]

EMD-33935
Download Map
3D View
Structure of recombinant RyR2 EGTA dataset, class 1 2, closed state
Release date: Aug. 10, 2022
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7vml
Q-score: 0.413

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-33936
Download Map
3D View
Structure of recombinant RyR2 EGTA dataset, class 1, closed state
Release date: Aug. 10, 2022
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7vmm
Q-score: 0.381

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-33937
Download Map
3D View
Structure of recombinant RyR2 EGTA dataset, class 2, closed state
Release date: Aug. 10, 2022
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 7vmn
Q-score: 0.377

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-33938
Download Map
3D View
Structure of recombinant RyR2 Ca2 dataset, class 1, open state
Release date: Aug. 10, 2022
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7vmo
Q-score: 0.379

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-33939
Download Map
3D View
Structure of recombinant RyR2 Ca2 dataset, class 2, open state
Release date: Aug. 10, 2022
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7vmp
Q-score: 0.336

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

EMD-33940
Download Map
3D View
Structure of recombinant RyR2 Ca2 dataset, class 3, open state
Release date: Aug. 10, 2022
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7vmq
Q-score: 0.306

Kobayashi T, Tsutsumi A, Kurebayashi N, Saito K, Kodama M, Sakurai T, Kikkawa M, Murayama T, Ogawa H

Nat Commun (2022) 13 pp. 2821-2821 [ DOI: doi:10.1038/s41467-022-30429-x Pubmed: 35595836 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [7]
  • Ligand [2]
  • Protein [2]
  • Cell [1]

Organism

  • Mus musculus [8]
  • Homo sapiens [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [8]

Model molecular weight

  • 2-5 MDa [8]

Release Date

  • 2022 [8]

Author by name

  • Kikkawa M [8]
  • Kobayashi T [8]
  • Kodama M [8]
  • Kurebayashi N [8]
  • Murayama T [8]
  • Ogawa H [8]
  • Saito K [8]
  • Sakurai T [8]
  • Tsutsumi A [8]

Author by ORCID

  • Ogawa H [7]
  • Kikkawa M [7]
  • Sakurai T [7]
  • Murayama T [7]
  • Kurebayashi N [7]
  • Tsutsumi A [7]
  • Kobayashi T [7]

Journal

  • NAT COMMUN [8]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [8]

External links

  • PDB [8]
  • AlphaFold DB [2]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
  • Complex Portal [1]