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grant_code:"GM131754"

Filter By

Current Database

  • EMDB [98]

Current status

  • REL [98]

Sample type

  • Complex [98]
  • Protein [95]
  • Ligand [75]
  • DNA [54]
  • RNA [6]

Organism

  • Saccharomyces cerevisiae [44]
  • Synthetic construct [37]
  • Homo sapiens [26]
  • Enterobacteria phage t4 [16]
  • Arabidopsis thaliana [5]
  • Dna molecule [3]
  • Escherichia coli [3]
  • Deinococcus radiodurans [2]
  • Xenopus laevis [2]
  • Simian virus 40 [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [98]

Resolution

  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [63]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [6]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [15]
  • 250-500 kDa [55]
  • 500-1000 kDa [8]
  • 1-2 MDa [6]

Release Date

  • 2025 [13]
  • 2024 [29]
  • 2023 [36]
  • 2022 [9]
  • 2021 [5]
  • 2020 [6]

Author by name

  • Li H [98]
  • O Donnell Me [49]
  • Georgescu R [31]
  • Feng X [28]
  • Yao NY [28]
  • He Q [26]
  • Wang F [26]
  • Yuan Z [25]
  • Zheng F [17]
  • Benkovic SJ [16]
  • Spiering MM [16]
  • O Donnell M [13]
  • Georgescu RE [12]
  • De Luna Almeida Santos R [12]
  • Yao YN [9]
  • Speck C [7]
  • Du M [6]
  • Kovach A [6]
  • Stillman B [6]
  • Yurieva O [6]
  • Bai L [5]
  • Baylin SB [5]
  • Burgie ES [5]
  • Cai Y [5]
  • Gannam ZTK [5]
  • Magdalou I [5]
  • Riera A [5]
  • Vierstra RD [5]
  • You Q [5]
  • Dodd T [4]
  • Ivanov I [4]
  • Mcloughlin KE [4]
  • Santos R [4]
  • Schneider S [4]
  • Yan C [4]
  • Barbon M [3]
  • Chauhan H [3]
  • Finkin-groner E [3]
  • Henderson NS [3]
  • Johl J [3]
  • Lin G [3]
  • Lyu M [3]
  • Ma X [3]
  • Thanassi DG [3]
  • Werneburg GT [3]
  • Yu Z [3]
  • Zhan W [3]
  • Zhao G [3]
  • Noguchi Y [2]
  • Faull SV [1]
  • Langston L [1]
  • Langston LD [1]
  • Mossler A [1]
  • Peach M [1]
  • Reuter LM [1]
  • Schauer GD [1]
  • Winkler C [1]

Author by ORCID

  • Li H [88]
  • O'donnell ME [43]
  • Yuan Z [21]
  • Feng X [19]
  • Zheng F [17]
  • Wang F [14]
  • Georgescu R [13]
  • Spiering MM [12]
  • Benkovic SJ [12]
  • Yao NY [9]
  • Speck C [7]
  • Yurieva O [6]
  • Kovach A [6]
  • Stillman B [6]
  • You Q [5]
  • Vierstra RD [5]
  • Baylin SB [5]
  • Schneider S [4]
  • Georgescu RE [4]
  • Ivanov I [4]
  • Burgie ES [4]
  • Bai L [4]
  • Dodd T [4]
  • Lyu M [3]
  • Zhan W [3]
  • Werneburg GT [3]
  • Thanassi DG [3]
  • Zhao G [3]
  • Barbon M [3]
  • Henderson NS [3]
  • Du M [3]
  • He Q [2]
  • Peach M [1]
  • Reuter LM [1]
  • Langston LD [1]
  • Faull SV [1]
  • Gannam ZTK [1]
  • Li H [1]
  • Mossler A [1]

Journal

  • NAT COMMUN [30]
  • BIORXIV [23]
  • PNAS [18]
  • NAT STRUCT MOL BIOL [6]
  • SCIENCE [6]
  • TO BE PUBLISHED [6]
  • COMMUN BIOL [5]
  • ELIFE [5]
  • J BIOL CHEM [5]
  • NAT PLANTS [4]
  • SCI ADV [3]
  • STRUCTURE [3]
  • NATURE [1]

Software

  • CRYOSPARC [26]
  • RELION [16]
  • CTFFIND [4]

Microscope

  • FEI TITAN KRIOS [80]
  • TFS KRIOS [12]
  • FEI TITAN [4]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [98]

Film or detector model

  • GATAN K3 6K X 4K [67]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]

External links

  • UniProt [90]
  • PDB [86]
  • PDBe-Kb [78]
  • Gene Ontology [77]
  • Pfam [76]
  • ChEBI [71]
  • InterPro [70]
  • AlphaFold DB [67]
  • DrugBank [59]
  • ChEMBL [56]
  • Complex Portal [45]
  • EMPIAR [15]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 98. Page 1 of 10
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EMD-47531
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3D View
T4 bacteriophage replicative holoenzyme, DNA in right Polymerase State 1
Release date: Nov. 19, 2025
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 9e5y
Q-score: 0.383

Feng X, Spiering MM, Santos R, Benkovic SJ, Li H

To Be Published

EMD-47824
Download Map
3D View
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase State 2
Release date: Nov. 19, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9ea2
Q-score: 0.326

Feng X, Spiering MM, Santos R, Benkovic SJ, Li H

To Be Published

EMD-47825
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3D View
T4 bacteriophage replicative holoenzyme with triple mutants D75R, Q430E, and K432E on exo- Polymerase
Release date: Nov. 19, 2025
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 9ea3
Q-score: 0.333

Feng X, Spiering MM, Santos R, Benkovic SJ, Li H

To Be Published

EMD-47826
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3D View
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase State 3
Release date: Nov. 19, 2025
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9ea6
Q-score: 0.349

Feng X, Spiering MM, Santos R, Benkovic SJ, Li H

To Be Published

EMD-47541
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3D View
Cryo-EM structure of Saccharomyces cerevisiae Pmt4 apo form
Release date: Oct. 15, 2025
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9e61
Q-score: 0.401

Du M, Yuan Z, Kovach A, Lyu M, Li H

Nat Commun (2025) 16 pp. 9726-9726 [ Pubmed: 41188226 DOI: doi:10.1038/s41467-025-64729-9 ]

EMD-47566
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3D View
Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Release date: Oct. 15, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9e6i
Q-score: 0.537

Du M, Yuan Z, Kovach A, Lyu M, Li H

Nat Commun (2025) 16 pp. 9726-9726 [ Pubmed: 41188226 DOI: doi:10.1038/s41467-025-64729-9 ]

EMD-47601
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3D View
Cryo-EM structure of Saccharomyces cerevisiae Pmt4-Ccw5 complex
Release date: Oct. 15, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9e6v
Q-score: 0.504

Du M, Yuan Z, Kovach A, Lyu M, Li H

Nat Commun (2025) 16 pp. 9726-9726 [ Pubmed: 41188226 DOI: doi:10.1038/s41467-025-64729-9 ]

EMD-49299
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3D View
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-editing state
Release date: June 4, 2025
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 9ne6
Q-score: 0.378

Wang F, He Q, O'Donnell ME, Li H

PNAS (2025) 122 pp. e2507232122-e2507232122 [ DOI: doi:10.1073/pnas.2507232122 Pubmed: 40440070 ]

EMD-49300
Download Map
3D View
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the Pol-backtracking state
Release date: June 4, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9ne7
Q-score: 0.37

Wang F, He Q, O'Donnell ME, Li H

PNAS (2025) 122 pp. e2507232122-e2507232122 [ DOI: doi:10.1073/pnas.2507232122 Pubmed: 40440070 ]

EMD-49301
Download Map
3D View
Human polymerase epsilon bound to PCNA and DNA with an in-situ-generated mismatch in the mismatch-locking state
Release date: June 4, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9ne8
Q-score: 0.329

Wang F, He Q, O'Donnell ME, Li H

PNAS (2025) 122 pp. e2507232122-e2507232122 [ DOI: doi:10.1073/pnas.2507232122 Pubmed: 40440070 ]

Sort by: Download
Showing 1 - 10 of 98. Page 1 of 10
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [98]

Current status

  • REL [98]

Sample type

  • Complex [98]
  • Protein [95]
  • Ligand [75]
  • DNA [54]
  • RNA [6]

Organism

  • Saccharomyces cerevisiae [44]
  • Synthetic construct [37]
  • Homo sapiens [26]
  • Enterobacteria phage t4 [16]
  • Arabidopsis thaliana [5]
  • Dna molecule [3]
  • Escherichia coli [3]
  • Deinococcus radiodurans [2]
  • Xenopus laevis [2]
  • Simian virus 40 [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [98]

Resolution

  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [63]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [6]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [15]
  • 250-500 kDa [55]
  • 500-1000 kDa [8]
  • 1-2 MDa [6]

Release Date

  • 2025 [13]
  • 2024 [29]
  • 2023 [36]
  • 2022 [9]
  • 2021 [5]
  • 2020 [6]

Author by name

  • Li H [98]
  • O Donnell Me [49]
  • Georgescu R [31]
  • Feng X [28]
  • Yao NY [28]
  • He Q [26]
  • Wang F [26]
  • Yuan Z [25]
  • Zheng F [17]
  • Benkovic SJ [16]
  • Spiering MM [16]
  • O Donnell M [13]
  • Georgescu RE [12]
  • De Luna Almeida Santos R [12]
  • Yao YN [9]
  • Speck C [7]
  • Du M [6]
  • Kovach A [6]
  • Stillman B [6]
  • Yurieva O [6]
  • Bai L [5]
  • Baylin SB [5]
  • Burgie ES [5]
  • Cai Y [5]
  • Gannam ZTK [5]
  • Magdalou I [5]
  • Riera A [5]
  • Vierstra RD [5]
  • You Q [5]
  • Dodd T [4]
  • Ivanov I [4]
  • Mcloughlin KE [4]
  • Santos R [4]
  • Schneider S [4]
  • Yan C [4]
  • Barbon M [3]
  • Chauhan H [3]
  • Finkin-groner E [3]
  • Henderson NS [3]
  • Johl J [3]
  • Lin G [3]
  • Lyu M [3]
  • Ma X [3]
  • Thanassi DG [3]
  • Werneburg GT [3]
  • Yu Z [3]
  • Zhan W [3]
  • Zhao G [3]
  • Noguchi Y [2]
  • Faull SV [1]
  • Langston L [1]
  • Langston LD [1]
  • Mossler A [1]
  • Peach M [1]
  • Reuter LM [1]
  • Schauer GD [1]
  • Winkler C [1]

Author by ORCID

  • Li H [88]
  • O'donnell ME [43]
  • Yuan Z [21]
  • Feng X [19]
  • Zheng F [17]
  • Wang F [14]
  • Georgescu R [13]
  • Spiering MM [12]
  • Benkovic SJ [12]
  • Yao NY [9]
  • Speck C [7]
  • Yurieva O [6]
  • Kovach A [6]
  • Stillman B [6]
  • You Q [5]
  • Vierstra RD [5]
  • Baylin SB [5]
  • Schneider S [4]
  • Georgescu RE [4]
  • Ivanov I [4]
  • Burgie ES [4]
  • Bai L [4]
  • Dodd T [4]
  • Lyu M [3]
  • Zhan W [3]
  • Werneburg GT [3]
  • Thanassi DG [3]
  • Zhao G [3]
  • Barbon M [3]
  • Henderson NS [3]
  • Du M [3]
  • He Q [2]
  • Peach M [1]
  • Reuter LM [1]
  • Langston LD [1]
  • Faull SV [1]
  • Gannam ZTK [1]
  • Li H [1]
  • Mossler A [1]

Journal

  • NAT COMMUN [30]
  • BIORXIV [23]
  • PNAS [18]
  • NAT STRUCT MOL BIOL [6]
  • SCIENCE [6]
  • TO BE PUBLISHED [6]
  • COMMUN BIOL [5]
  • ELIFE [5]
  • J BIOL CHEM [5]
  • NAT PLANTS [4]
  • SCI ADV [3]
  • STRUCTURE [3]
  • NATURE [1]

Software

  • CRYOSPARC [26]
  • RELION [16]
  • CTFFIND [4]

Microscope

  • FEI TITAN KRIOS [80]
  • TFS KRIOS [12]
  • FEI TITAN [4]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [98]

Film or detector model

  • GATAN K3 6K X 4K [67]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]

External links

  • UniProt [90]
  • PDB [86]
  • PDBe-Kb [78]
  • Gene Ontology [77]
  • Pfam [76]
  • ChEBI [71]
  • InterPro [70]
  • AlphaFold DB [67]
  • DrugBank [59]
  • ChEMBL [56]
  • Complex Portal [45]
  • EMPIAR [15]
  • SCOP2 [1]