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grant_code:"DRG-2514-24"

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [17]
  • Ligand [2]

Organism

  • Saccharomyces cerevisiae [15]
  • Homo sapiens [13]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [9]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]

Release Date

  • 2025 [18]
  • 2024 [2]

Author by name

  • Baek K [20]
  • Donovan KA [20]
  • Fischer ES [20]
  • Roy Burman Ss [18]
  • Hunkeler M [15]
  • Jin C [15]
  • Overwijn D [15]
  • Schmoker A [15]
  • Warner K [15]
  • Warner KM [15]
  • Gray NS [5]
  • Metivier RJ [5]
  • Abeja DM [3]
  • Bushman JW [3]
  • Che J [3]
  • Lakshminarayan M [3]
  • Lumpkin RJ [3]
  • Ojeda S [3]
  • Ryan JK [3]
  • Schmoker AM [3]
  • Verano AL [3]
  • Xiong Y [3]
  • Yoon H [3]
  • Yue H [3]
  • Byun WS [2]
  • Geng Q [2]
  • Hinshaw SM [2]
  • Jiang Z [2]
  • Li Z [2]
  • Mageed N [2]
  • Razumkov H [2]
  • Sarott RC [2]
  • Seo P [2]
  • Tang MT [2]
  • You I [2]

Author by ORCID

  • Fischer ES [20]
  • Roy Burman Ss [18]
  • Overwijn D [15]
  • Gray NS [5]
  • Donovan KA [5]
  • Ojeda S [3]
  • Xiong Y [3]
  • Verano AL [3]
  • Schmoker AM [3]
  • Yue H [3]
  • Li Z [2]
  • Sarott RC [2]
  • Tang MT [2]
  • Geng Q [2]
  • Hinshaw SM [2]
  • Byun WS [2]
  • Seo P [2]
  • Jiang Z [2]

Journal

  • CELL REP [15]
  • NAT COMMUN [3]
  • J AM CHEM SOC [2]

Software

  • CRYOSPARC [15]

Microscope

  • TFS TALOS [8]
  • TFS KRIOS [7]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [12]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • UniProt [17]
  • AlphaFold DB [10]
  • PDBe-Kb [10]
  • Gene Ontology [4]
  • PDB [4]
  • Pfam [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]
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Showing 1 - 10 of 20. Page 1 of 2
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EMD-47268
Download Map
3D View
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Release date: Aug. 6, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9dwv

Baek K, Metivier RJ, Roy Burman SS, Bushman JW, Yoon H, Lumpkin RJ, Ryan JK, Abeja DM, Lakshminarayan M, Yue H, Ojeda S, Xiong Y, Che J, Verano AL, Schmoker AM, Gray NS, Donovan KA, Fischer ES

Nat Commun (2025) 16 pp. 6831-6831 [ DOI: doi:10.1038/s41467-025-62099-w Pubmed: 40707481 ]

EMD-47269
Download Map
3D View
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Release date: Aug. 6, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9dww

Baek K, Metivier RJ, Roy Burman SS, Bushman JW, Yoon H, Lumpkin RJ, Ryan JK, Abeja DM, Lakshminarayan M, Yue H, Ojeda S, Xiong Y, Che J, Verano AL, Schmoker AM, Gray NS, Donovan KA, Fischer ES

Nat Commun (2025) 16 pp. 6831-6831 [ DOI: doi:10.1038/s41467-025-62099-w Pubmed: 40707481 ]

EMD-47270
Download Map
3D View
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216 local refinement
Release date: Aug. 6, 2025
Resolution: 3.4 Å
EM Method: Single-particle

Baek K, Metivier RJ, Roy Burman SS, Bushman JW, Yoon H, Lumpkin RJ, Ryan JK, Abeja DM, Lakshminarayan M, Yue H, Ojeda S, Xiong Y, Che J, Verano AL, Schmoker AM, Gray NS, Donovan KA, Fischer ES

Nat Commun (2025) 16 pp. 6831-6831 [ DOI: doi:10.1038/s41467-025-62099-w Pubmed: 40707481 ]

EMD-47035
Download Map
3D View
Cryo-EM map of full-length Tom1 S. cerevisiae , HECT focus map
Release date: May 28, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47045
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3D View
Cryo-EM map of full-length Tom1 S. cerevisiae , ARLD1-4 focus map
Release date: May 28, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47046
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3D View
Focus map, Cryo-EM map of Tom1-UBE2D2-ubiquitin complex
Release date: May 28, 2025
Resolution: 2.9 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47047
Download Map
3D View
Cryo-EM map of non-crosslinked Tom1, open conformation
Release date: May 28, 2025
Resolution: 4.1 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47048
Download Map
3D View
Cryo-EM map of full length S. cerevisiae Tom1, closed-ring conformation
Release date: May 28, 2025
Resolution: 3.8 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47049
Download Map
3D View
Tom1 ubiquitylation cascade, closed-ring conformation
Release date: May 28, 2025
Resolution: 3.7 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

EMD-47050
Download Map
3D View
Cryo-EM of Tom1 ubiquitylation, open conformation
Release date: May 28, 2025
Resolution: 4.9 Å
EM Method: Single-particle

Warner K, Hunkeler M, Baek K, Schmoker A, Roy Burman SS, Overwijn D, Jin C, Donovan KA, Fischer ES

Cell Rep (2025) 44 pp. 115688-115688 [ DOI: doi:10.1016/j.celrep.2025.115688 Pubmed: 40359109 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [17]
  • Ligand [2]

Organism

  • Saccharomyces cerevisiae [15]
  • Homo sapiens [13]

EM Method

  • Single-particle [20]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [9]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [2]

Release Date

  • 2025 [18]
  • 2024 [2]

Author by name

  • Baek K [20]
  • Donovan KA [20]
  • Fischer ES [20]
  • Roy Burman Ss [18]
  • Hunkeler M [15]
  • Jin C [15]
  • Overwijn D [15]
  • Schmoker A [15]
  • Warner K [15]
  • Warner KM [15]
  • Gray NS [5]
  • Metivier RJ [5]
  • Abeja DM [3]
  • Bushman JW [3]
  • Che J [3]
  • Lakshminarayan M [3]
  • Lumpkin RJ [3]
  • Ojeda S [3]
  • Ryan JK [3]
  • Schmoker AM [3]
  • Verano AL [3]
  • Xiong Y [3]
  • Yoon H [3]
  • Yue H [3]
  • Byun WS [2]
  • Geng Q [2]
  • Hinshaw SM [2]
  • Jiang Z [2]
  • Li Z [2]
  • Mageed N [2]
  • Razumkov H [2]
  • Sarott RC [2]
  • Seo P [2]
  • Tang MT [2]
  • You I [2]

Author by ORCID

  • Fischer ES [20]
  • Roy Burman Ss [18]
  • Overwijn D [15]
  • Gray NS [5]
  • Donovan KA [5]
  • Ojeda S [3]
  • Xiong Y [3]
  • Verano AL [3]
  • Schmoker AM [3]
  • Yue H [3]
  • Li Z [2]
  • Sarott RC [2]
  • Tang MT [2]
  • Geng Q [2]
  • Hinshaw SM [2]
  • Byun WS [2]
  • Seo P [2]
  • Jiang Z [2]

Journal

  • CELL REP [15]
  • NAT COMMUN [3]
  • J AM CHEM SOC [2]

Software

  • CRYOSPARC [15]

Microscope

  • TFS TALOS [8]
  • TFS KRIOS [7]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K3 6K X 4K [12]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • UniProt [17]
  • AlphaFold DB [10]
  • PDBe-Kb [10]
  • Gene Ontology [4]
  • PDB [4]
  • Pfam [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]