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grant_code:"BB/M01116X/1"

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Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Protein [3]
  • Ligand [2]

Organism

  • Cupriavidus metallidurans [2]
  • Homo sapiens [2]
  • Bdellovibrio bacteriovorus [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [1]

Release Date

  • 2025 [1]
  • 2022 [2]

Author by name

  • Stansfeld PJ [3]
  • Ashraf KU [2]
  • Clarke OB [2]
  • Dufrisne MB [2]
  • Erramilli SK [2]
  • Giacometti SI [2]
  • Graham CLB [2]
  • Herrera CM [2]
  • Kloss B [2]
  • Kossiakoff AA [2]
  • Loukeris M [2]
  • Mancia F [2]
  • Mcconville TH [2]
  • Nosol K [2]
  • Nygaard R [2]
  • Petrou VI [2]
  • Roper DI [2]
  • Skorupinska-tudek K [2]
  • Swiezewska E [2]
  • Trent MS [2]
  • Uhlemann AC [2]
  • Vickery ON [2]
  • Zinkle AP [2]
  • Caulton SG [1]
  • Doyle MT [1]
  • Gurvic D [1]
  • Jenkins M [1]
  • Knowles TJ [1]
  • Laloux G [1]
  • Lovering AL [1]
  • Mead L [1]
  • Parr RJ [1]
  • Radford P [1]
  • Ratkeviciute G [1]
  • Santin YG [1]
  • Silale A [1]
  • Sockett RE [1]
  • Van Den Berg B [1]

Author by ORCID

  • Stansfeld PJ [3]
  • Trent MS [2]
  • Erramilli SK [2]
  • Nygaard R [2]
  • Ashraf KU [2]
  • Loukeris M [2]
  • Petrou VI [2]
  • Swiezewska E [2]
  • Graham CLB [2]
  • Giacometti SI [2]
  • Uhlemann AC [2]
  • Roper DI [2]
  • Kloss B [2]
  • Clarke OB [2]
  • Nosol K [2]
  • Mancia F [2]
  • Caulton SG [1]
  • Radford P [1]
  • Lovering AL [1]
  • Doyle MT [1]
  • Sockett RE [1]
  • Knowles TJ [1]
  • Van Den Berg B [1]
  • Laloux G [1]
  • Silale A [1]
  • Jenkins M [1]

Journal

  • NATURE [2]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [3]
  • PDB [3]
  • UniProt [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • EMPIAR [1]
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EMD-51308
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3D View
Cryo-EM Structure of Pentameric Outer Membrane Protein A from Bdellovibrio bacteriovorus
Release date: July 9, 2025
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 9gf0
Q-score: 0.602

Parr RJ, Santin YG, Ratkeviciute G, Caulton SG, Radford P, Gurvic D, Jenkins M, Doyle MT, Mead L, Silale A, van den Berg B, Knowles TJ, Sockett RE, Stansfeld PJ, Laloux G, Lovering AL

Nat Commun (2025) 16 pp. 6213-6213 [ DOI: doi:10.1038/s41467-025-61633-0 Pubmed: 40617869 ]

EMD-26054
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Raw data
EMPIAR-10938
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its ligand bound state
Release date: April 6, 2022
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7tpg
Q-score: 0.497

Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper DI, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

Nature (2022) 604 pp. 371-376 [ DOI: doi:10.1038/s41586-022-04555-x Pubmed: 35388216 ]

EMD-26057
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3D View
Single-Particle Cryo-EM Structure of the WaaL O-antigen ligase in its apo state
Release date: April 6, 2022
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 7tpj
Q-score: 0.431

Ashraf KU, Nygaard R, Vickery ON, Erramilli SK, Herrera CM, McConville TH, Petrou VI, Giacometti SI, Dufrisne MB, Nosol K, Zinkle AP, Graham CLB, Loukeris M, Kloss B, Skorupinska-Tudek K, Swiezewska E, Roper DI, Clarke OB, Uhlemann AC, Kossiakoff AA, Trent MS, Stansfeld PJ, Mancia F

Nature (2022) 604 pp. 371-376 [ DOI: doi:10.1038/s41586-022-04555-x Pubmed: 35388216 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • Protein [3]
  • Ligand [2]

Organism

  • Cupriavidus metallidurans [2]
  • Homo sapiens [2]
  • Bdellovibrio bacteriovorus [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [1]

Release Date

  • 2025 [1]
  • 2022 [2]

Author by name

  • Stansfeld PJ [3]
  • Ashraf KU [2]
  • Clarke OB [2]
  • Dufrisne MB [2]
  • Erramilli SK [2]
  • Giacometti SI [2]
  • Graham CLB [2]
  • Herrera CM [2]
  • Kloss B [2]
  • Kossiakoff AA [2]
  • Loukeris M [2]
  • Mancia F [2]
  • Mcconville TH [2]
  • Nosol K [2]
  • Nygaard R [2]
  • Petrou VI [2]
  • Roper DI [2]
  • Skorupinska-tudek K [2]
  • Swiezewska E [2]
  • Trent MS [2]
  • Uhlemann AC [2]
  • Vickery ON [2]
  • Zinkle AP [2]
  • Caulton SG [1]
  • Doyle MT [1]
  • Gurvic D [1]
  • Jenkins M [1]
  • Knowles TJ [1]
  • Laloux G [1]
  • Lovering AL [1]
  • Mead L [1]
  • Parr RJ [1]
  • Radford P [1]
  • Ratkeviciute G [1]
  • Santin YG [1]
  • Silale A [1]
  • Sockett RE [1]
  • Van Den Berg B [1]

Author by ORCID

  • Stansfeld PJ [3]
  • Trent MS [2]
  • Erramilli SK [2]
  • Nygaard R [2]
  • Ashraf KU [2]
  • Loukeris M [2]
  • Petrou VI [2]
  • Swiezewska E [2]
  • Graham CLB [2]
  • Giacometti SI [2]
  • Uhlemann AC [2]
  • Roper DI [2]
  • Kloss B [2]
  • Clarke OB [2]
  • Nosol K [2]
  • Mancia F [2]
  • Caulton SG [1]
  • Radford P [1]
  • Lovering AL [1]
  • Doyle MT [1]
  • Sockett RE [1]
  • Knowles TJ [1]
  • Van Den Berg B [1]
  • Laloux G [1]
  • Silale A [1]
  • Jenkins M [1]

Journal

  • NATURE [2]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN [2]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [3]
  • PDB [3]
  • UniProt [3]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • EMPIAR [1]