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grant_code:"109718-63-RKNT"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Ligand [8]
  • Protein [8]

Organism

  • Human immunodeficiency virus 1 [8]
  • Homo sapiens [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 250-500 kDa [6]
  • 500-1000 kDa [2]

Release Date

  • 2020 [6]
  • 2019 [2]

Author by name

  • Ozorowski G [8]
  • Torres JL [8]
  • Ward AB [8]
  • Forli S [6]
  • Santos-martins D [6]
  • Copps J [2]
  • Cottrell CA [2]
  • Kumar S [2]
  • Moore JP [2]
  • Sanders RW [2]
  • Sarkar A [2]
  • Wilson IA [2]
  • Wu NC [2]
  • Yuan M [2]
  • De Val N [2]
  • Van Gils Mj [2]

Author by ORCID

  • Torres JL [8]
  • Ward AB [6]
  • Forli S [6]
  • Sarkar A [2]
  • Yuan M [2]
  • Cottrell CA [2]
  • Wu NC [2]
  • Kumar S [2]
  • Van Gils Mj [2]

Journal

  • BIORXIV [6]
  • CELL REP [6]
  • CELL HOST MICROBE [2]

Software

  • CRYOSPARC [5]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]

External links

  • AlphaFold DB [8]
  • ChEBI [8]
  • ChEMBL [8]
  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • Complex Portal [2]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-20150
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3D View
CD4- and 17-bound HIV-1 Env B41 SOSIP in complex with small molecule GO35
CryoEM
Release date: Oct. 21, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6opn
Q-score: 0.386
Similar entry percentile: 28%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-20151
Download Map
3D View
C3 symmetry reconstruction of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM
CryoEM
Release date: Oct. 21, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6opo
Q-score: 0.448
Similar entry percentile: 54%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-20152
Download Map
3D View
Asymmetric reconstruction of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM
CryoEM
Release date: Oct. 21, 2020
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6opp
Q-score: 0.411
Similar entry percentile: 48%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-20153
Download Map
3D View
Reconstruction of class 1 of CD4- and 17-bound B41 HIV-1 Env SOSIP incubated with LMNG and small molecule GO27
CryoEM
Release date: Oct. 21, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6opq
Q-score: 0.363
Similar entry percentile: 34%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-22048
Download Map
3D View
C3 symmetric reconstruction of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52
CryoEM
Release date: Oct. 21, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6x5b
Q-score: 0.396
Similar entry percentile: 36%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-22049
Download Map
3D View
Asymmetric reconstruction of CD4- and 17b-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52
CryoEM
Release date: Oct. 21, 2020
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 6x5c
Q-score: 0.341
Similar entry percentile: 42%

Ozorowski G, Torres JL, Santos-Martins D, Forli S, Ward AB

Cell Rep (2020) 33 pp. 108428-108428 [ DOI: doi:10.1016/j.celrep.2020.108428 Pubmed: 33238117 ]

EMD-0433
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3D View
AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody ACS202 fragment antigen binding
CryoEM
Release date: June 19, 2019
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6nc2
Q-score: 0.216
Similar entry percentile: 54%

Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA

Cell Host Microbe (2019) 25 pp. 873- [ Pubmed: 31194940 DOI: doi:10.1016/j.chom.2019.04.011 ]

EMD-0434
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3D View
AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody VRC34 fragment antigen binding
CryoEM
Release date: June 19, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6nc3
Q-score: 0.255
Similar entry percentile: 35%

Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA

Cell Host Microbe (2019) 25 pp. 873- [ Pubmed: 31194940 DOI: doi:10.1016/j.chom.2019.04.011 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Ligand [8]
  • Protein [8]

Organism

  • Human immunodeficiency virus 1 [8]
  • Homo sapiens [8]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 250-500 kDa [6]
  • 500-1000 kDa [2]

Release Date

  • 2020 [6]
  • 2019 [2]

Author by name

  • Ozorowski G [8]
  • Torres JL [8]
  • Ward AB [8]
  • Forli S [6]
  • Santos-martins D [6]
  • Copps J [2]
  • Cottrell CA [2]
  • Kumar S [2]
  • Moore JP [2]
  • Sanders RW [2]
  • Sarkar A [2]
  • Wilson IA [2]
  • Wu NC [2]
  • Yuan M [2]
  • De Val N [2]
  • Van Gils Mj [2]

Author by ORCID

  • Torres JL [8]
  • Ward AB [6]
  • Forli S [6]
  • Sarkar A [2]
  • Yuan M [2]
  • Cottrell CA [2]
  • Wu NC [2]
  • Kumar S [2]
  • Van Gils Mj [2]

Journal

  • BIORXIV [6]
  • CELL REP [6]
  • CELL HOST MICROBE [2]

Software

  • CRYOSPARC [5]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]

External links

  • AlphaFold DB [8]
  • ChEBI [8]
  • ChEMBL [8]
  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • Complex Portal [2]