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final_angle_assignment_merit_function:[50 TO *]

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Protein [16]
  • Complex [14]
  • Virus [10]
  • Other [2]
  • Ligand [1]

Organism

  • Equine infectious anemia virus [4]
  • Salmonella virus spn3us [3]
  • Hepatovirus a [3]
  • Saccharomyces cerevisiae [3]
  • Escherichia coli [3]
  • Vaccinia virus [2]
  • Rhodospirillum rubrum [2]
  • Mycoplasma pneumoniae [2]
  • Komagataella pastoris [2]
  • Xenopus laevis [2]
  • Homo sapiens [2]
  • Mus musculus [1]
  • Equine infectious anemia virus [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [18]
  • Subtomogram averaging [6]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [3]
  • 2-5 MDa [1]
  • 5-10 MDa [2]

Release Date

  • 2026 [2]
  • 2021 [4]
  • 2020 [7]
  • 2018 [3]
  • 2017 [7]
  • 2016 [1]

Author by name

  • Briggs JAG [6]
  • Morado DR [6]
  • Broad AM [4]
  • Dick RA [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Perilla JR [4]
  • Ricana CL [4]
  • Schur FKM [4]
  • Vogt VM [4]
  • Xu C [4]
  • Cheng N [3]
  • Clare DK [3]
  • Dang M [3]
  • Farr GW [3]
  • Fry EE [3]
  • Gao Q [3]
  • Heymann JB [3]
  • Horwich AL [3]
  • Hsia R-C [3]
  • Hsia RC [3]
  • Hu Z [3]
  • Kotecha A [3]
  • Natesh R [3]
  • Newcomb WW [3]
  • Rao Z [3]
  • Reilly ER [3]
  • Ren J [3]
  • Saibil HR [3]
  • Steven AC [3]
  • Stuart DI [3]
  • Sun Y [3]
  • Thomas JA [3]
  • Walter TS [3]
  • Wang B [3]
  • Wang J [3]
  • Wang X [3]
  • Winkler DC [3]
  • Wu W [3]
  • Yuan S [3]
  • Zhang B [3]
  • Zhu L [3]
  • Bertram J [2]
  • Bottcher B [2]
  • Brandt LTL [2]
  • Chen ZA [2]
  • Dejaegere A [2]
  • Durand A [2]
  • El-mkami H [2]
  • Fischer M [2]
  • Grant T [2]
  • Grigorieff N [2]
  • Himes BA [2]
  • Hughes AL [2]
  • Hyun JK [2]
  • Jang YT [2]
  • Jeong HS [2]
  • Jo DG [2]
  • Kang ES [2]
  • Kim SM [2]
  • Kim YH [2]
  • Kolesnikova O [2]
  • Kovtun O [2]
  • Lang K [2]
  • Lee SN [2]
  • Lucas BA [2]
  • Mahamid J [2]
  • Maslen SL [2]
  • Michaelis J [2]
  • Munro S [2]
  • Myasnikov AG [2]
  • Norman DG [2]
  • Ohashi Y [2]
  • Owen-hughes T [2]
  • Papai G [2]
  • Perisic O [2]
  • Petoukhov M [2]
  • Quack S [2]
  • Rappsilber J [2]
  • Ryan DP [2]
  • Ryu BH [2]
  • Schultz P [2]
  • Sharov G [2]
  • Shem AB [2]
  • Singh V [2]
  • Skehel M [2]
  • Sul JH [2]
  • Sundaramoorthy R [2]
  • Svergun DI [2]
  • Tremel S [2]
  • Treutlein B [2]
  • Voltz K [2]
  • Wiechens N [2]
  • Williams RL [2]
  • Xue L [2]
  • Ben-shem A [1]
  • Benlekbir S [1]
  • Bueler SA [1]

Author by ORCID

  • Briggs JAG [5]
  • Morado DR [5]
  • Broad AM [4]
  • Kravchuk V [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Ricana CL [4]
  • Xu C [4]
  • Perilla JR [4]
  • Dick RA [4]
  • Schur FKM [4]
  • Thomas JA [3]
  • Sun Y [3]
  • Fry EE [3]
  • Walter TS [3]
  • Natesh R [3]
  • Clare DK [3]
  • Stuart DI [3]
  • Kotecha A [3]
  • Farr GW [3]
  • Reilly ER [3]
  • Heymann JB [3]
  • Wang B [3]
  • Winkler DC [3]
  • Ren J [3]
  • Yuan S [3]
  • Steven AC [3]
  • Petoukhov M [2]
  • Mahamid J [2]
  • Himes BA [2]
  • Lucas BA [2]
  • Ryan DP [2]
  • El-mkami H [2]
  • Owen-hughes T [2]
  • Grigorieff N [2]
  • Hughes AL [2]
  • Michaelis J [2]
  • Papai G [2]
  • Treutlein B [2]
  • Dejaegere A [2]
  • Grant T [2]
  • Sharov G [2]
  • Schultz P [2]
  • Norman DG [2]
  • Bottcher B [2]
  • Durand A [2]
  • Quack S [2]
  • Shem AB [2]
  • Svergun DI [2]
  • Xue L [2]
  • Munro S [1]
  • Kovtun O [1]
  • Williams RL [1]
  • Robinson CV [1]
  • Schmidt C [1]
  • Maslen SL [1]
  • Lang K [1]
  • Ohashi Y [1]
  • Skehel M [1]
  • Perisic O [1]
  • Tremel S [1]
  • Von Wrisberg Mk [1]
  • Mazhab-jafari MT [1]
  • Rubinstein JL [1]
  • Chen ZA [1]
  • Brandt LTL [1]

Journal

  • ELIFE [4]
  • PLOS PATHOG [4]
  • INT J BIOL MACROMOL [3]
  • NAT COMMUN [3]
  • PNAS [3]
  • TO BE PUBLISHED [3]
  • VIRUSES [3]
  • NATURE [1]

Software

  • RELION [9]
  • MATLAB [6]
  • AV3 [4]
  • CTFFIND [4]
  • TOM TOOLBOX [4]
  • BSOFT [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • IMAGIC [3]
  • SPIDER [3]
  • CISTEM [2]
  • CRYOSPARC [2]
  • NOVACTF [2]
  • CTFPHASEFLIP [1]
  • FREALIGN [1]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [10]
  • TFS KRIOS [7]
  • FEI POLARA 300 [3]
  • FEI TECNAI F20 [3]
  • FEI TECNAI 20 [1]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • KODAK SO-163 FILM [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDB [22]
  • UniProt [10]
  • PDBe-Kb [9]
  • Gene Ontology [8]
  • InterPro [8]
  • AlphaFold DB [6]
  • Pfam [5]
  • CATH [3]
  • Complex Portal [2]
  • EMPIAR [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
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EMD-64474
Download Map
3D View
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
CryoEM
Release date: Aug. 5, 2026
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9usx
Q-score: 0.58
Similar entry percentile: 86%

Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

To Be Published

EMD-64475
Download Map
3D View
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
CryoEM
Release date: Aug. 5, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9usy
Q-score: 0.437
Similar entry percentile: 61%

Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

To Be Published

EMD-23771
Download Map
3D View
Raw data
EMPIAR-10727
3D reconstruction generated using the locations and orientations of 5,080 50S subunits detected in 220 images using 2DTM with a M. pneumoniae 50S template
CryoEM
Release date: June 23, 2021
Resolution: 20.0 Å
EM Method: Single-particle

Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N

eLife (2021) 10 [ Pubmed: 34114559 DOI: doi:10.7554/eLife.68946 ]

EMD-23772
Download Map
3D View
Raw data
EMPIAR-10727
3D reconstruction generated using the locations and orientations of 1,172 50S subunits detected in 220 images using 2DTM with a B. subtilis 50S template
CryoEM
Release date: June 23, 2021
Resolution: 20.0 Å
EM Method: Single-particle

Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N

eLife (2021) 10 [ Pubmed: 34114559 DOI: doi:10.7554/eLife.68946 ]

EMD-12237
Download Map
3D View
Subtomogram average reconstruction of humanVPS34 complex II bound to Rab5a on a lipid membrane
CryoEM
Release date: June 16, 2021
Resolution: 13.3 Å
EM Method: Subtomogram averaging

Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg M-K, Chen ZA, Maslen SL, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

To Be Published

EMD-12214
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3D View
human complex II-BATS bound to membrane-attached Rab5a-GTP
CryoEM
Release date: March 3, 2021
Resolution: 9.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7bl1
Q-score: 0.204
Similar entry percentile: 96%

Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

Nat Commun (2021) 12 pp. 1564-1564 [ Pubmed: 33692360 DOI: doi:10.1038/s41467-021-21695-2 ]

EMD-22331
Download Map
3D View
SPN3US phage empty capsid
CryoEM
Release date: Sept. 2, 2020
Resolution: 19.0 Å
EM Method: Single-particle

Heymann JB, Wang B, Newcomb WW, Wu W, Winkler DC, Cheng N, Reilly ER, Hsia RC, Thomas JA, Steven AC

Viruses (2020) 12 [ Pubmed: 32825132 DOI: doi:10.3390/v12090910 ]

EMD-22332
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3D View
Phage SPN3US mottled capsid glutaraldehyde-fixed
CryoEM
Release date: Sept. 2, 2020
Resolution: 20.0 Å
EM Method: Single-particle

Heymann JB, Wang B, Newcomb WW, Wu W, Winkler DC, Cheng N, Reilly ER, Hsia RC, Thomas JA, Steven AC

Viruses (2020) 12 [ Pubmed: 32825132 DOI: doi:10.3390/v12090910 ]

EMD-22333
Download Map
3D View
SPN3US phage mottled capsid
CryoEM
Release date: Sept. 2, 2020
Resolution: 16.0 Å
EM Method: Single-particle

Heymann JB, Wang B, Newcomb WW, Wu W, Winkler DC, Cheng N, Reilly ER, Hsia RC, Thomas JA, Steven AC

Viruses (2020) 12 [ Pubmed: 32825132 DOI: doi:10.3390/v12090910 ]

EMD-10381
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3D View
A 3.7 Angstrom structure of the EIAV CA-SP hexamer C2 from Gag-deltaMA tubes assembled at pH8
CryoEM
Release date: Jan. 15, 2020
Resolution: 3.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6t61
Q-score: 0.419
Similar entry percentile: 52%

Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM

PLoS Pathog (2020) 16 pp. e1008277-e1008277 [ DOI: doi:10.1371/journal.ppat.1008277 Pubmed: 31986188 ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
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Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Protein [16]
  • Complex [14]
  • Virus [10]
  • Other [2]
  • Ligand [1]

Organism

  • Equine infectious anemia virus [4]
  • Salmonella virus spn3us [3]
  • Hepatovirus a [3]
  • Saccharomyces cerevisiae [3]
  • Escherichia coli [3]
  • Vaccinia virus [2]
  • Rhodospirillum rubrum [2]
  • Mycoplasma pneumoniae [2]
  • Komagataella pastoris [2]
  • Xenopus laevis [2]
  • Homo sapiens [2]
  • Mus musculus [1]
  • Equine infectious anemia virus [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [18]
  • Subtomogram averaging [6]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 250-500 kDa [3]
  • 500-1000 kDa [3]
  • 2-5 MDa [1]
  • 5-10 MDa [2]

Release Date

  • 2026 [2]
  • 2021 [4]
  • 2020 [7]
  • 2018 [3]
  • 2017 [7]
  • 2016 [1]

Author by name

  • Briggs JAG [6]
  • Morado DR [6]
  • Broad AM [4]
  • Dick RA [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Kravchuk V [4]
  • Lyddon TD [4]
  • Perilla JR [4]
  • Ricana CL [4]
  • Schur FKM [4]
  • Vogt VM [4]
  • Xu C [4]
  • Cheng N [3]
  • Clare DK [3]
  • Dang M [3]
  • Farr GW [3]
  • Fry EE [3]
  • Gao Q [3]
  • Heymann JB [3]
  • Horwich AL [3]
  • Hsia R-C [3]
  • Hsia RC [3]
  • Hu Z [3]
  • Kotecha A [3]
  • Natesh R [3]
  • Newcomb WW [3]
  • Rao Z [3]
  • Reilly ER [3]
  • Ren J [3]
  • Saibil HR [3]
  • Steven AC [3]
  • Stuart DI [3]
  • Sun Y [3]
  • Thomas JA [3]
  • Walter TS [3]
  • Wang B [3]
  • Wang J [3]
  • Wang X [3]
  • Winkler DC [3]
  • Wu W [3]
  • Yuan S [3]
  • Zhang B [3]
  • Zhu L [3]
  • Bertram J [2]
  • Bottcher B [2]
  • Brandt LTL [2]
  • Chen ZA [2]
  • Dejaegere A [2]
  • Durand A [2]
  • El-mkami H [2]
  • Fischer M [2]
  • Grant T [2]
  • Grigorieff N [2]
  • Himes BA [2]
  • Hughes AL [2]
  • Hyun JK [2]
  • Jang YT [2]
  • Jeong HS [2]
  • Jo DG [2]
  • Kang ES [2]
  • Kim SM [2]
  • Kim YH [2]
  • Kolesnikova O [2]
  • Kovtun O [2]
  • Lang K [2]
  • Lee SN [2]
  • Lucas BA [2]
  • Mahamid J [2]
  • Maslen SL [2]
  • Michaelis J [2]
  • Munro S [2]
  • Myasnikov AG [2]
  • Norman DG [2]
  • Ohashi Y [2]
  • Owen-hughes T [2]
  • Papai G [2]
  • Perisic O [2]
  • Petoukhov M [2]
  • Quack S [2]
  • Rappsilber J [2]
  • Ryan DP [2]
  • Ryu BH [2]
  • Schultz P [2]
  • Sharov G [2]
  • Shem AB [2]
  • Singh V [2]
  • Skehel M [2]
  • Sul JH [2]
  • Sundaramoorthy R [2]
  • Svergun DI [2]
  • Tremel S [2]
  • Treutlein B [2]
  • Voltz K [2]
  • Wiechens N [2]
  • Williams RL [2]
  • Xue L [2]
  • Ben-shem A [1]
  • Benlekbir S [1]
  • Bueler SA [1]

Author by ORCID

  • Briggs JAG [5]
  • Morado DR [5]
  • Broad AM [4]
  • Kravchuk V [4]
  • Feathers JR [4]
  • Johnson MC [4]
  • Ricana CL [4]
  • Xu C [4]
  • Perilla JR [4]
  • Dick RA [4]
  • Schur FKM [4]
  • Thomas JA [3]
  • Sun Y [3]
  • Fry EE [3]
  • Walter TS [3]
  • Natesh R [3]
  • Clare DK [3]
  • Stuart DI [3]
  • Kotecha A [3]
  • Farr GW [3]
  • Reilly ER [3]
  • Heymann JB [3]
  • Wang B [3]
  • Winkler DC [3]
  • Ren J [3]
  • Yuan S [3]
  • Steven AC [3]
  • Petoukhov M [2]
  • Mahamid J [2]
  • Himes BA [2]
  • Lucas BA [2]
  • Ryan DP [2]
  • El-mkami H [2]
  • Owen-hughes T [2]
  • Grigorieff N [2]
  • Hughes AL [2]
  • Michaelis J [2]
  • Papai G [2]
  • Treutlein B [2]
  • Dejaegere A [2]
  • Grant T [2]
  • Sharov G [2]
  • Schultz P [2]
  • Norman DG [2]
  • Bottcher B [2]
  • Durand A [2]
  • Quack S [2]
  • Shem AB [2]
  • Svergun DI [2]
  • Xue L [2]
  • Munro S [1]
  • Kovtun O [1]
  • Williams RL [1]
  • Robinson CV [1]
  • Schmidt C [1]
  • Maslen SL [1]
  • Lang K [1]
  • Ohashi Y [1]
  • Skehel M [1]
  • Perisic O [1]
  • Tremel S [1]
  • Von Wrisberg Mk [1]
  • Mazhab-jafari MT [1]
  • Rubinstein JL [1]
  • Chen ZA [1]
  • Brandt LTL [1]

Journal

  • ELIFE [4]
  • PLOS PATHOG [4]
  • INT J BIOL MACROMOL [3]
  • NAT COMMUN [3]
  • PNAS [3]
  • TO BE PUBLISHED [3]
  • VIRUSES [3]
  • NATURE [1]

Software

  • RELION [9]
  • MATLAB [6]
  • AV3 [4]
  • CTFFIND [4]
  • TOM TOOLBOX [4]
  • BSOFT [3]
  • CTFFIND3, LABEL AND SPIDER [3]
  • IMAGIC [3]
  • SPIDER [3]
  • CISTEM [2]
  • CRYOSPARC [2]
  • NOVACTF [2]
  • CTFPHASEFLIP [1]
  • FREALIGN [1]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [10]
  • TFS KRIOS [7]
  • FEI POLARA 300 [3]
  • FEI TECNAI F20 [3]
  • FEI TECNAI 20 [1]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [9]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • KODAK SO-163 FILM [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDB [22]
  • UniProt [10]
  • PDBe-Kb [9]
  • Gene Ontology [8]
  • InterPro [8]
  • AlphaFold DB [6]
  • Pfam [5]
  • CATH [3]
  • Complex Portal [2]
  • EMPIAR [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]