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average_qscore:[-0.11 TO 0.97]
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Current Database
- EMDB [29056]
Current status
- REL [29056]
Sample type
- Protein [28410]
- Complex [25421]
- Ligand [18344]
- RNA [3889]
- DNA [2807]
- Virus [1709]
- Cellular component [1299]
- Sample [934]
- Cell [286]
- Tissue [129]
- Other [49]
Organism
- Homo sapiens [11943]
- Synthetic construct [2330]
- Mus musculus [2022]
- Escherichia coli [1761]
- Severe acute respiratory syndrome coronavirus [1668]
- Saccharomyces cerevisiae [1125]
- Rattus norvegicus [860]
- Escherichia coli [718]
- Saccharomyces cerevisiae [619]
- Bos taurus [580]
- Sus scrofa [523]
- Oryctolagus cuniculus [502]
- Lama glama [491]
- Human immunodeficiency virus 1 [448]
- Arabidopsis thaliana [403]
- Xenopus laevis [355]
- Drosophila melanogaster [201]
- Mycolicibacterium smegmatis [192]
- Gallus gallus [169]
- Mycobacterium tuberculosis [161]
- Influenza a virus [143]
- Bacillus subtilis [142]
- Vicugna pacos [138]
- Staphylococcus aureus [129]
- Thermus thermophilus [125]
- Macaca mulatta [120]
- Danio rerio [119]
- Pseudomonas aeruginosa [106]
- Mycobacterium tuberculosis [103]
- Escherichia coli [101]
- Chaetomium thermophilum [100]
- Enterobacteria phage t4 [94]
- Bacillus subtilis [89]
- Pseudomonas aeruginosa [79]
- Chlamydomonas reinhardtii [78]
- Ovis aries [75]
- Synechocystis sp. pcc 6803 [74]
- Salmonella enterica [70]
- Caenorhabditis elegans [67]
- Streptococcus pyogenes [66]
- Chaetomium thermophilum [65]
- Tetrahymena thermophila [64]
- Aequorea victoria [60]
- Plasmodium falciparum [59]
- Schizosaccharomyces pombe [58]
- Polytomella sp. pringsheim 198.80 [58]
- Plasmodium falciparum [57]
- Monkeypox virus [56]
- Severe acute respiratory syndrome coronavirus [53]
- Schizosaccharomyces pombe [52]
- Amanita phalloides [52]
- Spinacia oleracea [51]
- Escherichia virus t7 [50]
- Mycolicibacterium smegmatis [50]
- Clostridioides difficile [49]
- Escherichia phage lambda [49]
- Klebsiella pneumoniae [49]
- Adeno-associated virus [48]
- Dna molecule [47]
- Vibrio cholerae [47]
- Cricetulus griseus [46]
- Enterovirus d [46]
- Enterobacteria phage t4 [45]
- Middle east respiratory syndrome-related coronavirus [44]
- Thermus thermophilus [44]
- Legionella pneumophila [44]
- African swine fever virus [43]
- Escherichia coli [42]
- (no species) [41]
- Human coronavirus hku1 [40]
- Trypanosoma brucei [39]
- Salmonella enterica [39]
- Human cytomegalovirus [37]
- Canis lupus [37]
- Mycoplasma pneumoniae [36]
- Saccharomyces cerevisiae [35]
- Aquifex aeolicus [35]
- Enterovirus a [35]
- Bacillus sp. (strain ps3) [34]
- Acinetobacter baumannii [34]
- Spodoptera frugiperda [34]
- Xenopus tropicalis [34]
- Thermococcus profundus [33]
- Strongylocentrotus purpuratus [33]
- Hepatitis b virus [32]
- Meiothermus taiwanensis [32]
- Thermotoga maritima [32]
- Rous sarcoma virus [31]
- Saccharolobus solfataricus [31]
- Enterovirus b [30]
- Clostridium perfringens [30]
- Parengyodontium album [30]
- Oryza sativa [30]
- Yarrowia lipolytica [30]
- Zika virus [30]
- Sus scrofa [30]
- Candida albicans [29]
- Saccharolobus solfataricus [28]
- Mesocricetus auratus [27]
- Unidentified adenovirus [27]
EM Method
- Single-particle [27067]
- Helical reconstruction [1592]
- Subtomogram averaging [288]
- Electron Crystallography [106]
- Tomography [3]
Resolution
- < 2Å [256]
- ≥ 2Å and < 3Å [7706]
- ≥ 3Å and < 4Å [15514]
- ≥ 4Å and < 5Å [3124]
- ≥ 5Å and < 6Å [515]
- ≥ 6Å and < 8Å [915]
- ≥ 8Å and < 12Å [626]
- ≥ 12Å and < 16Å [169]
- ≥ 16Å and < 20Å [92]
- ≥ 20Å and < 30Å [97]
- ≥ 30Å [42]
Model molecular weight
- 0-50 kDa [596]
- 50-100 kDa [1831]
- 100-250 kDa [9168]
- 250-500 kDa [7566]
- 500-1000 kDa [4380]
- 1-2 MDa [2041]
- 2-5 MDa [2151]
- 5-10 MDa [556]
- > 10 MDa [418]
Release Date
- 2025 [6185]
- 2024 [5245]
- 2023 [4483]
- 2022 [3992]
- 2021 [2874]
- 2020 [2296]
- 2019 [1369]
- 2018 [857]
- 2017 [510]
- 2016 [430]
- 2015 [216]
- 2014 [122]
- 2013 [112]
- 2012 [80]
- 2011 [69]
- 2010 [53]
- 2009 [56]
- 2008 [9]
- 2007 [26]
- 2006 [22]
- 2005 [20]
- 2004 [8]
- 2003 [16]
- 2002 [6]
Author by name
- Zhang Y [1190]
- Wang Y [1143]
- Zhang X [963]
- Wang X [864]
- Li Y [756]
- Wang J [754]
- Li X [710]
- Li Z [689]
- Liu Y [641]
- Zhang Z [641]
- Wang L [603]
- Zhang J [579]
- Gao Y [554]
- Li S [545]
- Li J [520]
- Zhang L [519]
- Chen Y [503]
- Chen X [488]
- Li H [486]
- Zhang H [452]
- Wang Q [445]
- Liu C [438]
- Wang H [437]
- Shi Y [425]
- Xu Y [421]
- Liu S [416]
- Li D [415]
- Liu Z [414]
- Wang C [412]
- Chen J [407]
- Liu J [406]
- Zhang S [402]
- Chen Z [400]
- Zhang C [383]
- Liu L [370]
- Liu X [369]
- Jiang Y [365]
- Zhang K [360]
- Yang Y [356]
- Ward AB [341]
- Zhao Y [335]
- Wang Z [330]
- Wang F [317]
- Li W [316]
- Zhao J [304]
- Liu H [301]
- Yang X [301]
- Huang Y [299]
- Wang S [299]
- Yu X [299]
- Xu HE [298]
- Xu C [294]
- Rao Z [293]
- Wang P [289]
- Zhang B [286]
- Xu J [283]
- Beckmann R [277]
- Zhu Y [277]
- Yang H [274]
- Wang M [271]
- Chen L [266]
- Wang W [265]
- Zhou Y [265]
- Zhang W [261]
- Li M [259]
- Zhou Q [257]
- Zhou ZH [253]
- Yang F [249]
- Cheng J [248]
- Liu B [244]
- Lu Y [244]
- Sun Y [242]
- Zhu X [240]
- Wu Y [239]
- Chen Q [236]
- Wu J [231]
- Zhang M [231]
- Zhao X [228]
- Gao GF [225]
- Cheng Y [223]
- Chen H [220]
- Nureki O [220]
- Zhang Q [219]
- Qi J [218]
- Scheres SHW [217]
- Guo Y [216]
- Huang Z [216]
- Li L [216]
- Sun J [216]
- Yang J [215]
- Kotecha A [214]
- Sun L [212]
- Kwong PD [210]
- Yu Z [209]
- Zhou J [209]
- Berninghausen O [208]
- Rubinstein JL [201]
- Wu C [201]
- Yang M [200]
- Cramer P [199]
Author by ORCID
- Kotecha A [212]
- Xu HE [207]
- Ward AB [194]
- Cheng Y [174]
- Scheres SHW [170]
- Kwong PD [169]
- Gao N [164]
- Li H [159]
- Rubinstein JL [159]
- Raunser S [157]
- Gao GF [157]
- Skiniotis G [154]
- Beckmann R [149]
- Chiu W [143]
- Nureki O [141]
- Subramaniam S [133]
- Kobilka BK [131]
- Bai XC [131]
- Zhou ZH [127]
- Goedert M [125]
- Ranson NA [124]
- Edwards RJ [124]
- Yang M [121]
- Wang X [121]
- Kuhlbrandt W [120]
- Rao Z [115]
- Yan C [113]
- Amunts A [113]
- Zhang Y [113]
- Wilson DN [113]
- Plevka P [113]
- Yang D [111]
- Borgnia MJ [109]
- Wang F [109]
- Egelman EH [109]
- Zhang K [107]
- Zhang K [107]
- Korostelev AA [106]
- Wang MW [105]
- Gmeiner P [105]
- Cramer P [104]
- Stahlberg H [104]
- Xiong X [104]
- Cheng J [104]
- He X [102]
- Robinson CV [101]
- Sobolevsky AI [99]
- Gao Y [99]
- Yamashita K [98]
- Chipman P [98]
- Zheng Q [97]
- Qi J [97]
- Sun JP [97]
- Acharya P [96]
- Baker D [95]
- Xiao P [95]
- Steyaert J [94]
- Mills DJ [93]
- Papasergi-scott MM [93]
- He F [91]
- Kishikawa JI [91]
- Liu B [90]
- Shi Y [89]
- Venugopal H [88]
- Li X [88]
- Huiskonen JT [88]
- Schoehn G [88]
- Aricescu AR [88]
- Hilger D [87]
- Chai P [86]
- Briggs JAG [86]
- Murphy BJ [85]
- Gao Y [85]
- Zhao Y [85]
- Du J [85]
- Nogales E [84]
- Cottrell CA [83]
- Kato T [83]
- Hummer G [82]
- Gorman J [82]
- Malinauskas T [82]
- Chen L [82]
- Lea SM [81]
- Pardon E [81]
- Corti D [81]
- Cusack S [81]
- Kollman JM [80]
- Batebi H [80]
- Sachse C [80]
- Panova O [80]
- Shirouzu M [80]
- Perez-hernandez G [80]
- Hildebrand PW [80]
- Yu EW [79]
- Gu J [79]
- Demo G [79]
- Li S [79]
- Guo J [79]
- Li N [78]
- Jiang Y [78]
Journal
- NAT COMMUN [5602]
- NATURE [2658]
- TO BE PUBLISHED [2611]
- NAT STRUCT MOL BIOL [1961]
- PNAS [1660]
- SCIENCE [1407]
- CELL [1227]
- BIORXIV [1065]
- ELIFE [1051]
- SCI ADV [1004]
- MOL CELL [983]
- STRUCTURE [739]
- CELL REP [626]
- NUCLEIC ACIDS RES [549]
- CELL RES [519]
- COMMUN BIOL [356]
- EMBO J [344]
- CELL DISCOV [335]
- J VIROL [314]
- J BIOL CHEM [286]
- NAT CHEM BIOL [280]
- J MOL BIOL [265]
- NAT MICROBIOL [210]
- PLOS PATHOG [206]
- ACTA CRYSTALLOGR D STRUCT BIOL [189]
- NAT PLANTS [147]
- CELL HOST MICROBE [131]
- MBIO [121]
- J AM CHEM SOC [113]
- PLOS BIOL [113]
- SCI REP [109]
- IMMUNITY [100]
- PROTEIN CELL [96]
- NEURON [94]
- PROTEIN SCI [94]
- J STRUCT BIOL [90]
- VIRUSES [89]
- EMBO REP [79]
- NAT METHODS [71]
- J MED CHEM [63]
- LIFE SCI ALLIANCE [63]
- ISCIENCE [60]
- IUCRJ [53]
- SIGNAL TRANSDUCT TARGET THER [49]
- INT J MOL SCI [45]
- ACTA NEUROPATHOL [43]
- ANGEW CHEM INT ED ENGL [43]
- J CELL BIOL [41]
- NAT CATAL [41]
- PLOS ONE [40]
- ADV SCI [39]
- NPJ VACCINES [39]
- PNAS NEXUS [39]
- BIOCHEM BIOPHYS RES COMMUN [35]
- COMMUN CHEM [34]
- BIOCHEMISTRY [33]
- SCI TRANSL MED [32]
- J STRUCT BIOL X [30]
- BLOOD [29]
- DEV CELL [29]
- INT J BIOL MACROMOL [29]
- RES SQ [28]
- PLANT CELL [27]
- MOL PLANT [26]
- NATL SCI REV [25]
- ACS NANO [24]
- FEBS J [24]
- PLANT COMMUN. [24]
- EMERG MICROBES INFECT [22]
- RNA [22]
- J.MOL.CELL.CARDIOL. [21]
- SCI IMMUNOL [21]
- ACS CHEM BIOL [20]
- HLIFE [20]
- BIOMOLECULES [19]
- BIOCHEM J [18]
- CELL REP MED [18]
- J EXP MED [18]
- NAT CHEM [18]
- CURR BIOL [17]
- FEBS LETT [17]
- GENES DEV [17]
- NAT NANOTECHNOL [17]
- MICROBIOL SPECTR [16]
- NAT NEUROSCI [16]
- SCI SIGNAL [16]
- ACS CATAL [15]
- FRONT IMMUNOL [15]
- SCI BULL (BEIJING) [15]
- VIROLOGY [15]
- ACTA PHARMACOL.SIN. [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [14]
- J GEN VIROL [14]
- MOL THER METHODS CLIN DEV [14]
- ACS CENT SCI [13]
- FUNDAM RES [13]
- CELL CHEM BIOL [12]
- FASEB J [12]
- ACS INFECT DIS. [11]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [11]
Software
- RELION [7533]
- CRYOSPARC [6986]
- CTFFIND [773]
- CISTEM [356]
- GCTF [321]
- FREALIGN [267]
- SPIDER [223]
- COOT [180]
- PHENIX [152]
- CHIMERA [145]
- WARP [108]
- SPHIRE [92]
- EMAN [81]
- JSPR [75]
- EMAN2 [62]
- UCSF CHIMERAX [62]
- DYNAMO [60]
- UCSF CHIMERA [59]
- CRYOLO [49]
- MATLAB [49]
- MDFF [43]
- AV3 [42]
- AUTO3DEM [36]
- IMOD [36]
- TOM TOOLBOX [36]
- IMAGIC [33]
- AIMLESS [24]
- EMFIT [23]
- SITUS [21]
- CHIMERA, MDFF [19]
- IHRSR [19]
- SPIDER, FREALIGN [19]
- ISOLDE [18]
- PYTOM [18]
- MOLREP [17]
- SIMPLE [17]
- CHIMERA, COOT [16]
- POINTLESS [16]
- XMIPP [16]
- CTFFIND3, RELION [15]
- IMIRS [15]
- SPRING [15]
- UNBLUR, CTFFIND4, FREALIGN [15]
- CHIMERA, FLEX-EM [14]
- MRC [14]
- CHIMERA, SITUS [13]
- IMAGIC, CUSTOM, SPIDER [13]
- PEET [13]
- SPARX [13]
- SUBTOM [13]
- CTFFIND3 [12]
- DIREX [12]
- O [12]
- EMCLARITY [11]
- FREALIX [10]
- MPSA [10]
- SCIPION [10]
- FOCUS [9]
- TOM [9]
- URO [9]
- EMAN1 [8]
- EMPFT EM3DR [8]
- IMAGIC-5, SPIDER [8]
- J3DR [8]
- SPIDER, IMAGIC [8]
- SPIDER, PACKAGE [8]
- SPIDER, SPARX [8]
- APPION [7]
- CHIMERA, PHENIX [7]
- EM3DR2 [7]
- FLEX-EM [7]
- JSPR, EMAN, EMAN2 [7]
- REFMAC [7]
- RELION, FREALIGN [7]
- SPIDER PACKAGE [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN1, FREALIGN [6]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- JALIGN [6]
- PHASER [6]
- SPIDER, RELION [6]
- TOM, AV3 [6]
- TOPAZ [6]
- XMIPP, SPIDER [6]
- AMIRA [5]
- CHIMERA, CNS [5]
- CHIMERA, REFMAC [5]
- CTFFIND4 [5]
- EPU [5]
- IMOD, PRIISM/IVE [5]
- MOTIONCORR2 [5]
- ROSETTA [5]
- RSREF [5]
- SERIALEM [5]
- STOPGAP [5]
- XMIPP, ML, TOMO [5]
- 2DX [4]
Microscope
- FEI TITAN KRIOS [19062]
- TFS KRIOS [5096]
- FEI TALOS ARCTICA [1510]
- TFS GLACIOS [811]
- FEI POLARA 300 [556]
- JEOL CRYO ARM 300 [411]
- FEI TITAN [282]
- FEI TECNAI F20 [265]
- FEI TECNAI ARCTICA [254]
- FEI TECNAI F30 [241]
- TFS TALOS [94]
- JEOL 3200FSC [85]
- FEI/PHILIPS CM200FEG [50]
- FEI TECNAI 20 [45]
- FEI/PHILIPS CM300FEG/T [42]
- JEOL CRYO ARM 200 [38]
- FEI TECNAI 12 [35]
- FEI MORGAGNI [20]
- FEI TECNAI SPIRIT [17]
- JEOL 3000SFF [17]
- JEOL 3200FS [14]
- JEOL KYOTO-3000SFF [13]
- FEI/PHILIPS CM300FEG/HE [11]
- JEOL 1400/HR YPS FEG [11]
- JEOL 2010F [10]
- FEI TECNAI 10 [9]
- FEI/PHILIPS CM200FEG/ST [9]
- JEOL 2200FS [7]
- FEI/PHILIPS CM120T [6]
- JEOL 2100F [6]
- TFS TALOS F200C [6]
- JEOL 2100 [5]
- TFS TITAN THEMIS [5]
- FEI/PHILIPS CM200T [4]
- OTHER [4]
- FEI/PHILIPS CM12 [3]
- JEOL 1200EXII [3]
- JEOL 4000EX [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/UT [2]
- JEOL 1200 [2]
- JEOL 2010 [2]
- JEOL 2200FSC [2]
- TFS TALOS L120C [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM420 [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 1200EX [1]
- JEOL 2010HC [1]
- JEOL 2010HT [1]
- JEOL 2010UHR [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [28715]
- OTHER [215]
- LAB6 [86]
- TUNGSTEN HAIRPIN [41]
Film or detector model
- GATAN K3 6K X 4K [8542]
- GATAN K2 SUMMIT 4K X 4K [6421]
- GATAN K3 BIOQUANTUM 6K X 4K [5875]
- FEI FALCON IV 4K X 4K [2669]
- FEI FALCON III 4K X 4K [1721]
- GATAN K2 QUANTUM 4K X 4K [1160]
- FEI FALCON II 4K X 4K [810]
- TFS FALCON 4I 4K X 4K [420]
- KODAK SO-163 FILM [328]
- GATAN K3 BIOCONTINUUM 6K X 4K [259]
- GATAN K2 BASE 4K X 4K [138]
- GATAN ULTRASCAN 4000 4K X 4K [107]
- GATAN K2 4K X 4K [99]
- OTHER [65]
- TVIPS TEMCAM-F416 4K X 4K [64]
- FEI EAGLE 4K X 4K [48]
- DIRECT ELECTRON DE-20 5K X 3K [41]
- FEI FALCON I 4K X 4K [38]
- TVIPS TEMCAM-F415 4K X 4K [27]
- DIRECT ELECTRON DE-64 8K X 8K [26]
- FEI CETA 4K X 4K [25]
- GATAN K2 IS 4K X 4K [23]
- GENERIC GATAN 4K X 4K [23]
- DIRECT ELECTRON APOLLO 4K X 4K [19]
- DIRECT ELECTRON DE-10 5K X 4K [19]
- DIRECT ELECTRON DE-16 4K X 4K [18]
- GENERIC CCD [16]
- GENERIC TVIPS 4K X 4K [16]
- GATAN MULTISCAN [14]
- TVIPS TEMCAM-F816 8K X 8K [13]
- DECTRIS SINGLA 1K X 1K [11]
- GENERIC GATAN [9]
- DIRECT ELECTRON DE-12 4K X 3K [7]
- FEI EAGLE 2K X 2K [7]
- GATAN ULTRASCAN 1000 2K X 2K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- AGFA SCIENTA FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC FILM [3]
- GENERIC GATAN 2K X 2K [2]
- GENERIC TVIPS [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC CCD 2K X 2K [1]
- GENERIC IMAGE PLATES [1]
External links
- PDB [28841]
- UniProt [27294]
- PDBe-Kb [24988]
- Pfam [23832]
- AlphaFold DB [23003]
- Gene Ontology [22211]
- InterPro [21987]
- ChEBI [17093]
- ChEMBL [15494]
- DrugBank [13755]
- Complex Portal [7754]
- EMPIAR [2285]
- SCOP2 [655]
- CATH [417]
Release date: Dec. 3, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9e5z
Q-score: 0.484
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9e5z
Q-score: 0.484
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e77
Q-score: 0.476
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e77
Q-score: 0.476
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e81
Q-score: 0.481
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e81
Q-score: 0.481
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9efm
Q-score: 0.45
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9efm
Q-score: 0.45
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 9efq
Q-score: 0.448
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 9efq
Q-score: 0.448
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9efv
Q-score: 0.443
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9efv
Q-score: 0.443
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9eg1
Q-score: 0.411
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9eg1
Q-score: 0.411
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 9eg8
Q-score: 0.417
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 9eg8
Q-score: 0.417
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 9egl
Q-score: 0.283
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 9egl
Q-score: 0.283
Shi H, Zheng N
To Be Published
Release date: Dec. 3, 2025
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9ei0
Q-score: 0.537
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9ei0
Q-score: 0.537
Selvakumar P, Swartz KJ
To Be Published
Filter By
Current Database
- EMDB [29056]
Current status
- REL [29056]
Sample type
- Protein [28410]
- Complex [25421]
- Ligand [18344]
- RNA [3889]
- DNA [2807]
- Virus [1709]
- Cellular component [1299]
- Sample [934]
- Cell [286]
- Tissue [129]
- Other [49]
Organism
- Homo sapiens [11943]
- Synthetic construct [2330]
- Mus musculus [2022]
- Escherichia coli [1761]
- Severe acute respiratory syndrome coronavirus [1668]
- Saccharomyces cerevisiae [1125]
- Rattus norvegicus [860]
- Escherichia coli [718]
- Saccharomyces cerevisiae [619]
- Bos taurus [580]
- Sus scrofa [523]
- Oryctolagus cuniculus [502]
- Lama glama [491]
- Human immunodeficiency virus 1 [448]
- Arabidopsis thaliana [403]
- Xenopus laevis [355]
- Drosophila melanogaster [201]
- Mycolicibacterium smegmatis [192]
- Gallus gallus [169]
- Mycobacterium tuberculosis [161]
- Influenza a virus [143]
- Bacillus subtilis [142]
- Vicugna pacos [138]
- Staphylococcus aureus [129]
- Thermus thermophilus [125]
- Macaca mulatta [120]
- Danio rerio [119]
- Pseudomonas aeruginosa [106]
- Mycobacterium tuberculosis [103]
- Escherichia coli [101]
- Chaetomium thermophilum [100]
- Enterobacteria phage t4 [94]
- Bacillus subtilis [89]
- Pseudomonas aeruginosa [79]
- Chlamydomonas reinhardtii [78]
- Ovis aries [75]
- Synechocystis sp. pcc 6803 [74]
- Salmonella enterica [70]
- Caenorhabditis elegans [67]
- Streptococcus pyogenes [66]
- Chaetomium thermophilum [65]
- Tetrahymena thermophila [64]
- Aequorea victoria [60]
- Plasmodium falciparum [59]
- Schizosaccharomyces pombe [58]
- Polytomella sp. pringsheim 198.80 [58]
- Plasmodium falciparum [57]
- Monkeypox virus [56]
- Severe acute respiratory syndrome coronavirus [53]
- Schizosaccharomyces pombe [52]
- Amanita phalloides [52]
- Spinacia oleracea [51]
- Escherichia virus t7 [50]
- Mycolicibacterium smegmatis [50]
- Clostridioides difficile [49]
- Escherichia phage lambda [49]
- Klebsiella pneumoniae [49]
- Adeno-associated virus [48]
- Dna molecule [47]
- Vibrio cholerae [47]
- Cricetulus griseus [46]
- Enterovirus d [46]
- Enterobacteria phage t4 [45]
- Middle east respiratory syndrome-related coronavirus [44]
- Thermus thermophilus [44]
- Legionella pneumophila [44]
- African swine fever virus [43]
- Escherichia coli [42]
- (no species) [41]
- Human coronavirus hku1 [40]
- Trypanosoma brucei [39]
- Salmonella enterica [39]
- Human cytomegalovirus [37]
- Canis lupus [37]
- Mycoplasma pneumoniae [36]
- Saccharomyces cerevisiae [35]
- Aquifex aeolicus [35]
- Enterovirus a [35]
- Bacillus sp. (strain ps3) [34]
- Acinetobacter baumannii [34]
- Spodoptera frugiperda [34]
- Xenopus tropicalis [34]
- Thermococcus profundus [33]
- Strongylocentrotus purpuratus [33]
- Hepatitis b virus [32]
- Meiothermus taiwanensis [32]
- Thermotoga maritima [32]
- Rous sarcoma virus [31]
- Saccharolobus solfataricus [31]
- Enterovirus b [30]
- Clostridium perfringens [30]
- Parengyodontium album [30]
- Oryza sativa [30]
- Yarrowia lipolytica [30]
- Zika virus [30]
- Sus scrofa [30]
- Candida albicans [29]
- Saccharolobus solfataricus [28]
- Mesocricetus auratus [27]
- Unidentified adenovirus [27]
EM Method
- Single-particle [27067]
- Helical reconstruction [1592]
- Subtomogram averaging [288]
- Electron Crystallography [106]
- Tomography [3]
Resolution
- < 2Å [256]
- ≥ 2Å and < 3Å [7706]
- ≥ 3Å and < 4Å [15514]
- ≥ 4Å and < 5Å [3124]
- ≥ 5Å and < 6Å [515]
- ≥ 6Å and < 8Å [915]
- ≥ 8Å and < 12Å [626]
- ≥ 12Å and < 16Å [169]
- ≥ 16Å and < 20Å [92]
- ≥ 20Å and < 30Å [97]
- ≥ 30Å [42]
Model molecular weight
- 0-50 kDa [596]
- 50-100 kDa [1831]
- 100-250 kDa [9168]
- 250-500 kDa [7566]
- 500-1000 kDa [4380]
- 1-2 MDa [2041]
- 2-5 MDa [2151]
- 5-10 MDa [556]
- > 10 MDa [418]
Release Date
- 2025 [6185]
- 2024 [5245]
- 2023 [4483]
- 2022 [3992]
- 2021 [2874]
- 2020 [2296]
- 2019 [1369]
- 2018 [857]
- 2017 [510]
- 2016 [430]
- 2015 [216]
- 2014 [122]
- 2013 [112]
- 2012 [80]
- 2011 [69]
- 2010 [53]
- 2009 [56]
- 2008 [9]
- 2007 [26]
- 2006 [22]
- 2005 [20]
- 2004 [8]
- 2003 [16]
- 2002 [6]
Author by name
- Zhang Y [1190]
- Wang Y [1143]
- Zhang X [963]
- Wang X [864]
- Li Y [756]
- Wang J [754]
- Li X [710]
- Li Z [689]
- Liu Y [641]
- Zhang Z [641]
- Wang L [603]
- Zhang J [579]
- Gao Y [554]
- Li S [545]
- Li J [520]
- Zhang L [519]
- Chen Y [503]
- Chen X [488]
- Li H [486]
- Zhang H [452]
- Wang Q [445]
- Liu C [438]
- Wang H [437]
- Shi Y [425]
- Xu Y [421]
- Liu S [416]
- Li D [415]
- Liu Z [414]
- Wang C [412]
- Chen J [407]
- Liu J [406]
- Zhang S [402]
- Chen Z [400]
- Zhang C [383]
- Liu L [370]
- Liu X [369]
- Jiang Y [365]
- Zhang K [360]
- Yang Y [356]
- Ward AB [341]
- Zhao Y [335]
- Wang Z [330]
- Wang F [317]
- Li W [316]
- Zhao J [304]
- Liu H [301]
- Yang X [301]
- Huang Y [299]
- Wang S [299]
- Yu X [299]
- Xu HE [298]
- Xu C [294]
- Rao Z [293]
- Wang P [289]
- Zhang B [286]
- Xu J [283]
- Beckmann R [277]
- Zhu Y [277]
- Yang H [274]
- Wang M [271]
- Chen L [266]
- Wang W [265]
- Zhou Y [265]
- Zhang W [261]
- Li M [259]
- Zhou Q [257]
- Zhou ZH [253]
- Yang F [249]
- Cheng J [248]
- Liu B [244]
- Lu Y [244]
- Sun Y [242]
- Zhu X [240]
- Wu Y [239]
- Chen Q [236]
- Wu J [231]
- Zhang M [231]
- Zhao X [228]
- Gao GF [225]
- Cheng Y [223]
- Chen H [220]
- Nureki O [220]
- Zhang Q [219]
- Qi J [218]
- Scheres SHW [217]
- Guo Y [216]
- Huang Z [216]
- Li L [216]
- Sun J [216]
- Yang J [215]
- Kotecha A [214]
- Sun L [212]
- Kwong PD [210]
- Yu Z [209]
- Zhou J [209]
- Berninghausen O [208]
- Rubinstein JL [201]
- Wu C [201]
- Yang M [200]
- Cramer P [199]
Author by ORCID
- Kotecha A [212]
- Xu HE [207]
- Ward AB [194]
- Cheng Y [174]
- Scheres SHW [170]
- Kwong PD [169]
- Gao N [164]
- Li H [159]
- Rubinstein JL [159]
- Raunser S [157]
- Gao GF [157]
- Skiniotis G [154]
- Beckmann R [149]
- Chiu W [143]
- Nureki O [141]
- Subramaniam S [133]
- Kobilka BK [131]
- Bai XC [131]
- Zhou ZH [127]
- Goedert M [125]
- Ranson NA [124]
- Edwards RJ [124]
- Yang M [121]
- Wang X [121]
- Kuhlbrandt W [120]
- Rao Z [115]
- Yan C [113]
- Amunts A [113]
- Zhang Y [113]
- Wilson DN [113]
- Plevka P [113]
- Yang D [111]
- Borgnia MJ [109]
- Wang F [109]
- Egelman EH [109]
- Zhang K [107]
- Zhang K [107]
- Korostelev AA [106]
- Wang MW [105]
- Gmeiner P [105]
- Cramer P [104]
- Stahlberg H [104]
- Xiong X [104]
- Cheng J [104]
- He X [102]
- Robinson CV [101]
- Sobolevsky AI [99]
- Gao Y [99]
- Yamashita K [98]
- Chipman P [98]
- Zheng Q [97]
- Qi J [97]
- Sun JP [97]
- Acharya P [96]
- Baker D [95]
- Xiao P [95]
- Steyaert J [94]
- Mills DJ [93]
- Papasergi-scott MM [93]
- He F [91]
- Kishikawa JI [91]
- Liu B [90]
- Shi Y [89]
- Venugopal H [88]
- Li X [88]
- Huiskonen JT [88]
- Schoehn G [88]
- Aricescu AR [88]
- Hilger D [87]
- Chai P [86]
- Briggs JAG [86]
- Murphy BJ [85]
- Gao Y [85]
- Zhao Y [85]
- Du J [85]
- Nogales E [84]
- Cottrell CA [83]
- Kato T [83]
- Hummer G [82]
- Gorman J [82]
- Malinauskas T [82]
- Chen L [82]
- Lea SM [81]
- Pardon E [81]
- Corti D [81]
- Cusack S [81]
- Kollman JM [80]
- Batebi H [80]
- Sachse C [80]
- Panova O [80]
- Shirouzu M [80]
- Perez-hernandez G [80]
- Hildebrand PW [80]
- Yu EW [79]
- Gu J [79]
- Demo G [79]
- Li S [79]
- Guo J [79]
- Li N [78]
- Jiang Y [78]
Journal
- NAT COMMUN [5602]
- NATURE [2658]
- TO BE PUBLISHED [2611]
- NAT STRUCT MOL BIOL [1961]
- PNAS [1660]
- SCIENCE [1407]
- CELL [1227]
- BIORXIV [1065]
- ELIFE [1051]
- SCI ADV [1004]
- MOL CELL [983]
- STRUCTURE [739]
- CELL REP [626]
- NUCLEIC ACIDS RES [549]
- CELL RES [519]
- COMMUN BIOL [356]
- EMBO J [344]
- CELL DISCOV [335]
- J VIROL [314]
- J BIOL CHEM [286]
- NAT CHEM BIOL [280]
- J MOL BIOL [265]
- NAT MICROBIOL [210]
- PLOS PATHOG [206]
- ACTA CRYSTALLOGR D STRUCT BIOL [189]
- NAT PLANTS [147]
- CELL HOST MICROBE [131]
- MBIO [121]
- J AM CHEM SOC [113]
- PLOS BIOL [113]
- SCI REP [109]
- IMMUNITY [100]
- PROTEIN CELL [96]
- NEURON [94]
- PROTEIN SCI [94]
- J STRUCT BIOL [90]
- VIRUSES [89]
- EMBO REP [79]
- NAT METHODS [71]
- J MED CHEM [63]
- LIFE SCI ALLIANCE [63]
- ISCIENCE [60]
- IUCRJ [53]
- SIGNAL TRANSDUCT TARGET THER [49]
- INT J MOL SCI [45]
- ACTA NEUROPATHOL [43]
- ANGEW CHEM INT ED ENGL [43]
- J CELL BIOL [41]
- NAT CATAL [41]
- PLOS ONE [40]
- ADV SCI [39]
- NPJ VACCINES [39]
- PNAS NEXUS [39]
- BIOCHEM BIOPHYS RES COMMUN [35]
- COMMUN CHEM [34]
- BIOCHEMISTRY [33]
- SCI TRANSL MED [32]
- J STRUCT BIOL X [30]
- BLOOD [29]
- DEV CELL [29]
- INT J BIOL MACROMOL [29]
- RES SQ [28]
- PLANT CELL [27]
- MOL PLANT [26]
- NATL SCI REV [25]
- ACS NANO [24]
- FEBS J [24]
- PLANT COMMUN. [24]
- EMERG MICROBES INFECT [22]
- RNA [22]
- J.MOL.CELL.CARDIOL. [21]
- SCI IMMUNOL [21]
- ACS CHEM BIOL [20]
- HLIFE [20]
- BIOMOLECULES [19]
- BIOCHEM J [18]
- CELL REP MED [18]
- J EXP MED [18]
- NAT CHEM [18]
- CURR BIOL [17]
- FEBS LETT [17]
- GENES DEV [17]
- NAT NANOTECHNOL [17]
- MICROBIOL SPECTR [16]
- NAT NEUROSCI [16]
- SCI SIGNAL [16]
- ACS CATAL [15]
- FRONT IMMUNOL [15]
- SCI BULL (BEIJING) [15]
- VIROLOGY [15]
- ACTA PHARMACOL.SIN. [14]
- BIOCHIM BIOPHYS ACTA BIOENERG [14]
- J GEN VIROL [14]
- MOL THER METHODS CLIN DEV [14]
- ACS CENT SCI [13]
- FUNDAM RES [13]
- CELL CHEM BIOL [12]
- FASEB J [12]
- ACS INFECT DIS. [11]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [11]
Software
- RELION [7533]
- CRYOSPARC [6986]
- CTFFIND [773]
- CISTEM [356]
- GCTF [321]
- FREALIGN [267]
- SPIDER [223]
- COOT [180]
- PHENIX [152]
- CHIMERA [145]
- WARP [108]
- SPHIRE [92]
- EMAN [81]
- JSPR [75]
- EMAN2 [62]
- UCSF CHIMERAX [62]
- DYNAMO [60]
- UCSF CHIMERA [59]
- CRYOLO [49]
- MATLAB [49]
- MDFF [43]
- AV3 [42]
- AUTO3DEM [36]
- IMOD [36]
- TOM TOOLBOX [36]
- IMAGIC [33]
- AIMLESS [24]
- EMFIT [23]
- SITUS [21]
- CHIMERA, MDFF [19]
- IHRSR [19]
- SPIDER, FREALIGN [19]
- ISOLDE [18]
- PYTOM [18]
- MOLREP [17]
- SIMPLE [17]
- CHIMERA, COOT [16]
- POINTLESS [16]
- XMIPP [16]
- CTFFIND3, RELION [15]
- IMIRS [15]
- SPRING [15]
- UNBLUR, CTFFIND4, FREALIGN [15]
- CHIMERA, FLEX-EM [14]
- MRC [14]
- CHIMERA, SITUS [13]
- IMAGIC, CUSTOM, SPIDER [13]
- PEET [13]
- SPARX [13]
- SUBTOM [13]
- CTFFIND3 [12]
- DIREX [12]
- O [12]
- EMCLARITY [11]
- FREALIX [10]
- MPSA [10]
- SCIPION [10]
- FOCUS [9]
- TOM [9]
- URO [9]
- EMAN1 [8]
- EMPFT EM3DR [8]
- IMAGIC-5, SPIDER [8]
- J3DR [8]
- SPIDER, IMAGIC [8]
- SPIDER, PACKAGE [8]
- SPIDER, SPARX [8]
- APPION [7]
- CHIMERA, PHENIX [7]
- EM3DR2 [7]
- FLEX-EM [7]
- JSPR, EMAN, EMAN2 [7]
- REFMAC [7]
- RELION, FREALIGN [7]
- SPIDER PACKAGE [7]
- CHIMERA, FLEX-EM, NAMD2.6 [6]
- CHIMERA, ROSETTA, PHENIX, COOT [6]
- CTFFIND3, EMAN2, RELION [6]
- EMAN1, FREALIGN [6]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [6]
- IMOD AND IN-HOUSE PROCEDURES [6]
- JALIGN [6]
- PHASER [6]
- SPIDER, RELION [6]
- TOM, AV3 [6]
- TOPAZ [6]
- XMIPP, SPIDER [6]
- AMIRA [5]
- CHIMERA, CNS [5]
- CHIMERA, REFMAC [5]
- CTFFIND4 [5]
- EPU [5]
- IMOD, PRIISM/IVE [5]
- MOTIONCORR2 [5]
- ROSETTA [5]
- RSREF [5]
- SERIALEM [5]
- STOPGAP [5]
- XMIPP, ML, TOMO [5]
- 2DX [4]
Microscope
- FEI TITAN KRIOS [19062]
- TFS KRIOS [5096]
- FEI TALOS ARCTICA [1510]
- TFS GLACIOS [811]
- FEI POLARA 300 [556]
- JEOL CRYO ARM 300 [411]
- FEI TITAN [282]
- FEI TECNAI F20 [265]
- FEI TECNAI ARCTICA [254]
- FEI TECNAI F30 [241]
- TFS TALOS [94]
- JEOL 3200FSC [85]
- FEI/PHILIPS CM200FEG [50]
- FEI TECNAI 20 [45]
- FEI/PHILIPS CM300FEG/T [42]
- JEOL CRYO ARM 200 [38]
- FEI TECNAI 12 [35]
- FEI MORGAGNI [20]
- FEI TECNAI SPIRIT [17]
- JEOL 3000SFF [17]
- JEOL 3200FS [14]
- JEOL KYOTO-3000SFF [13]
- FEI/PHILIPS CM300FEG/HE [11]
- JEOL 1400/HR YPS FEG [11]
- JEOL 2010F [10]
- FEI TECNAI 10 [9]
- FEI/PHILIPS CM200FEG/ST [9]
- JEOL 2200FS [7]
- FEI/PHILIPS CM120T [6]
- JEOL 2100F [6]
- TFS TALOS F200C [6]
- JEOL 2100 [5]
- TFS TITAN THEMIS [5]
- FEI/PHILIPS CM200T [4]
- OTHER [4]
- FEI/PHILIPS CM12 [3]
- JEOL 1200EXII [3]
- JEOL 4000EX [3]
- FEI TECNAI SPHERA [2]
- FEI/PHILIPS CM200FEG/UT [2]
- JEOL 1200 [2]
- JEOL 2010 [2]
- JEOL 2200FSC [2]
- TFS TALOS L120C [2]
- FEI/PHILIPS CM10 [1]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- FEI/PHILIPS CM300FEG/ST [1]
- FEI/PHILIPS EM420 [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 1200EX [1]
- JEOL 2010HC [1]
- JEOL 2010HT [1]
- JEOL 2010UHR [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [28715]
- OTHER [215]
- LAB6 [86]
- TUNGSTEN HAIRPIN [41]
Film or detector model
- GATAN K3 6K X 4K [8542]
- GATAN K2 SUMMIT 4K X 4K [6421]
- GATAN K3 BIOQUANTUM 6K X 4K [5875]
- FEI FALCON IV 4K X 4K [2669]
- FEI FALCON III 4K X 4K [1721]
- GATAN K2 QUANTUM 4K X 4K [1160]
- FEI FALCON II 4K X 4K [810]
- TFS FALCON 4I 4K X 4K [420]
- KODAK SO-163 FILM [328]
- GATAN K3 BIOCONTINUUM 6K X 4K [259]
- GATAN K2 BASE 4K X 4K [138]
- GATAN ULTRASCAN 4000 4K X 4K [107]
- GATAN K2 4K X 4K [99]
- OTHER [65]
- TVIPS TEMCAM-F416 4K X 4K [64]
- FEI EAGLE 4K X 4K [48]
- DIRECT ELECTRON DE-20 5K X 3K [41]
- FEI FALCON I 4K X 4K [38]
- TVIPS TEMCAM-F415 4K X 4K [27]
- DIRECT ELECTRON DE-64 8K X 8K [26]
- FEI CETA 4K X 4K [25]
- GATAN K2 IS 4K X 4K [23]
- GENERIC GATAN 4K X 4K [23]
- DIRECT ELECTRON APOLLO 4K X 4K [19]
- DIRECT ELECTRON DE-10 5K X 4K [19]
- DIRECT ELECTRON DE-16 4K X 4K [18]
- GENERIC CCD [16]
- GENERIC TVIPS 4K X 4K [16]
- GATAN MULTISCAN [14]
- TVIPS TEMCAM-F816 8K X 8K [13]
- DECTRIS SINGLA 1K X 1K [11]
- GENERIC GATAN [9]
- DIRECT ELECTRON DE-12 4K X 3K [7]
- FEI EAGLE 2K X 2K [7]
- GATAN ULTRASCAN 1000 2K X 2K [5]
- TVIPS TEMCAM-F224 2K X 2K [5]
- AGFA SCIENTA FILM [3]
- GATAN ULTRASCAN 10000 10K X 10K [3]
- GENERIC FILM [3]
- GENERIC GATAN 2K X 2K [2]
- GENERIC TVIPS [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- GATAN ORIUS SC200 2K X 2K [1]
- GATAN ORIUS SC600 2.7K X 2.7K [1]
- GENERIC CCD 2K X 2K [1]
- GENERIC IMAGE PLATES [1]
External links
- PDB [28841]
- UniProt [27294]
- PDBe-Kb [24988]
- Pfam [23832]
- AlphaFold DB [23003]
- Gene Ontology [22211]
- InterPro [21987]
- ChEBI [17093]
- ChEMBL [15494]
- DrugBank [13755]
- Complex Portal [7754]
- EMPIAR [2285]
- SCOP2 [655]
- CATH [417]